Journal of Computational Chemistry
© Wiley Periodicals, Inc.
Edited By: Charles L. Brooks III, Masahiro Ehara, Gernot Frenking, and Peter R. Schreiner
Impact Factor: 3.648
ISI Journal Citation Reports © Ranking: 2015: 41/163 (Chemistry Multidisciplinary)
Online ISSN: 1096-987X
Recently Published Articles
- Conformational Space of a Polyphilic Molecule with a Fluorophilic Side Chain Integrated in a DPPC Bilayer (pages 576–583)
Guido F. von Rudorff, Tobias Watermann, Xiang-Yang Guo and Daniel Sebastiani
Version of Record online: 16 FEB 2017 | DOI: 10.1002/jcc.24711
The conformational space of a tansmembrane molecule in a DPPC membrane by means of large scale molecular dynamics simulations has been investigated. This molecule consists of different parts with fundamentally different interactions with their environment. The core consists of aromatic rings; the two outer groups in contact with the surrounding water are hydrophilic glycerol groups, while at the center one alkane as well as one perfluoroalkane chain are attached.
- How computational methods and relativistic effects influence the study of chemical reactions involving Ru-NO complexes?
Renato Pereira Orenha, Régis Tadeu Santiago, Roberto Luiz Andrade Haiduke and Sérgio Emanuel Galembeck
Version of Record online: 16 FEB 2017 | DOI: 10.1002/jcc.24762
Nitric oxide shows a relevant role in many biological processes and ruthenium amine complexes can be used to control its availability. Thus, the influence of two different treatments for relativistic effects (ECP or DKH2) is analyzed with respect to geometric parameters and energies of typical chemical reactions involving this class of complexes. Additionally, several electronic structure methods are evaluated comparatively to the reactions energies from CCSD(T).
- A multipolar approach to the interatomic covalent interaction energy
Evelio Francisco, Daniel Menéndez Crespo, Aurora Costales and Ángel Martín Pendás
Version of Record online: 16 FEB 2017 | DOI: 10.1002/jcc.24758
Interatomic or interfragment covalent energies in real space, as measured by the interacting quantum atoms exchange-correlation energies ( ) are shown to be well-approximated by a multipolar approximation if terms up to the charge–quadrupole interaction are retained (cdq). The cdq approximation improves considerably the performance of the zeroth-order approximation, in which Vxc is equal to the bond order (delocalization index, δAB) over the interatomic distance.
- Gating energetics of a voltage-dependent K+ channel pore domain
Greg Starek, J. Alfredo Freites, Simon Bernèche and Douglas J. Tobias
Version of Record online: 16 FEB 2017 | DOI: 10.1002/jcc.24742
Free energy calculations suggest multiple energetically favorable conformations of the pore domain of KvAP, a voltage gated potassium ion channel. The energetic landscape is influenced by the hydration of the ion conducting pore. The solvation effects revealed here could bridge seemingly contradictory theoretical and experimental results concerning the mechanism and energetics of gating in voltage-gated potassium ion channels.
- Accurate, robust, and reliable calculations of Poisson–Boltzmann binding energies
Duc D. Nguyen, Bao Wang and Guo-Wei Wei
Version of Record online: 16 FEB 2017 | DOI: 10.1002/jcc.24757
MIBPB (http://weilab.math.msu.edu/MIBPB/) is a second order accurate Poisson–Boltzmann (PB) online solver. Due to the use of advanced elliptic interface techniques, MIBPB's relative absolute errors in calculating electrostatic solvation free energies and binding free energies are less than 0.3% and 3%, respectively, when the mesh size is refined from 1.1 to 0.2 Å.