Journal of Computational Chemistry
Copyright © 2015 Wiley Periodicals, Inc., A Wiley Company
Edited By: Charles L. Brooks III, Masahiro Ehara, Gernot Frenking, and Peter R. Schreiner
Impact Factor: 3.601
ISI Journal Citation Reports © Ranking: 2013: 36/148 (Chemistry Multidisciplinary)
Online ISSN: 1096-987X
Recently Published Articles
- Structure and stability of supramolecular crown ether complexes
Kim Julia Hintze, Arne Lützen and Thomas Bredow
Article first published online: 22 MAY 2015 | DOI: 10.1002/jcc.23950
A protocol for the efficient calculation of supramolecular binding affinities of crown ether derivatives with ammonium cations is presented. The performance of various density functionals and the MP2 method is investigated and the influence of dispersion interaction is analyzed. CCSD(T) binding energies extrapolated to the basis set limit served as internal reference.
- Conformational ensembles and sampled energy landscapes: Analysis and comparison (pages 1213–1231)
Frédéric Cazals, Tom Dreyfus, Dorian Mazauric, Christine-Andrea Roth and Charles H. Robert
Article first published online: 21 MAY 2015 | DOI: 10.1002/jcc.23913
The potential energy landscape (PEL) plays a fundamental role in understanding the meta-stable states of a system as well as transitions between them. Novel methods are presented for modeling a sampled PEL and its associated transition graph (including ruggedness), and for comparing two PELs obtained, for example, from two different simulation runs. Software tools implementing these methods are made available and should prove valuable wherever conformational ensembles and energy landscapes are used.
- Replica state exchange metadynamics for improving the convergence of free energy estimates
Raimondas Galvelis and Yuji Sugita
Article first published online: 19 MAY 2015 | DOI: 10.1002/jcc.23945
Metadynamics (MTD) is a powerful enhanced sampling method for systems with rugged energy landscapes. It constructs a bias potential in a collective variable (CV) space to overcome barriers between metastable states. In the bias-exchange MTD (BE-MTD), multiple replicas approximate the CV space by exchanging bias potentials (replica conditions). We propose the replica state exchange metadynamics (RSE-MTD), which use a more sophisticated replica-exchange scheme to improve the convergence of free energy for a given simulation time.
- A comparative computationally study about the defined m(II) pincer hydrogenation catalysts (m = fe, ru, os)
Haijun Jiao, Kathrin Junge, Elisabetta Alberico and Matthias Beller
Article first published online: 17 MAY 2015 | DOI: 10.1002/jcc.23944
DFT studies on the defined pincer-type catalysts M(H)2(CO)[NH(C2H4PiPr2)2] (1M) and M(H)(CO)[N(C2H4PiPr2)2] (2M) (M = Fe, Ru, Os) reveal remarkable differences in electronic structures and hydrogenation reactivity of nitriles, ester, and ketones. For acetonitrile hydrogenation, Fe- and Ru-based catalysts are best. For methyl benzoate hydrogenation and dehydrogenation of benzyl alcohol, Ru-based catalysts are best. In contrast, Os-based catalysts are least active.
- A DFT study on the insertion of CO2 into styrene oxide catalyzed by 1-butyl-3-methyl-Imidazolium bromide ionic liquid
Sandro Marmitt and Paulo F. B. Gonçalves
Article first published online: 15 MAY 2015 | DOI: 10.1002/jcc.23930
The catalyzed cycloaddition of CO2 into styrene oxide was addressed theoretically in the ωB97X-D level. Two possible routes were considered and the role of the cation and anion belonging to the catalyst in the ring opening of the epoxide was investigated. Reactive indices and noncovalent interaction analysis were performed to explain the reactivity and the attack position.