Proteins: Structure, Function, and Bioinformatics

Cover image for Vol. 83 Issue 2

Accepted Articles (Accepted, unedited articles published online and citable. The final edited and typeset version of record will appear in future.)

Edited By: Bertrand Garcia-Moreno

Impact Factor: 2.921

ISI Journal Citation Reports © Ranking: 2013: 32/74 (Biophysics); 139/291 (Biochemistry & Molecular Biology)

Online ISSN: 1097-0134

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  1. 1 - 26
  1. Research Articles

    1. Systematic solution to homo-oligomeric structures determined by NMR

      Jeffrey W. Martin, Pei Zhou and Bruce R. Donald

      Accepted manuscript online: 23 JAN 2015 05:25PM EST | DOI: 10.1002/prot.24768

    2. Flexibility in the N-terminal actin-binding domain: clues from in silico mutations and molecular dynamics

      Devlina Chakravarty, Soumyananda Chakraborti and Pinak Chakrabarti

      Accepted manuscript online: 23 JAN 2015 05:25PM EST | DOI: 10.1002/prot.24767

    3. Native fold and docking pose discrimination by the same residue-based scoring function

      Edoardo Sarti, Daniele Granata, Flavio Seno, Antonio Trovato and Alessandro Laio

      Accepted manuscript online: 23 JAN 2015 05:25PM EST | DOI: 10.1002/prot.24764

    4. NF023 binding to Xiap-bir1: Searching drugs for regulation of the NF-κB pathway

      Federica Cossu, Mario Milani, Serena Grassi, Francesca Malvezzi, Alessandro Corti, Martino Bolognesi and Eloise Mastrangelo

      Accepted manuscript online: 23 JAN 2015 05:24PM EST | DOI: 10.1002/prot.24766

  2. Perspectives

  3. Research Articles

    1. Hierarchical domain-motion analysis of conformational changes in sarcoplasmic reticulum Ca2+-ATPase

      Chigusa Kobayashi, Ryotaro Koike, Motonori Ota and Yuji Sugita

      Accepted manuscript online: 16 JAN 2015 01:04AM EST | DOI: 10.1002/prot.24763

    2. Reduced alphabet for protein folding prediction

      Jitao T. Huang, Titi Wang, Shanran R. Huang and Xin Li

      Accepted manuscript online: 16 JAN 2015 01:04AM EST | DOI: 10.1002/prot.24762

    3. Inferring the microscopic surface energy of protein-protein interfaces from mutation data

      Iain H. Moal, Justas Dapkunas and Juan Fernández-Recio

      Accepted manuscript online: 14 JAN 2015 12:31AM EST | DOI: 10.1002/prot.24761

    4. Evaluation of conformational changes in diabetes-associated mutation in insulin A chain: A molecular dynamics study

      Yong Hwan Kim, Kevin Kastner, Badi Abdul-Wahid and Dr Jesús A. Izaguirre

      Accepted manuscript online: 13 JAN 2015 10:29AM EST | DOI: 10.1002/prot.24759

    5. Molecular Dynamics Investigation of the Ionic Liquid/Enzyme Interface: Application to Engineering Enzyme Surface Charge

      Patrick R. Burney, Erik M. Nordwald, Katie Hickman, Joel L. Kaar and Jim Pfaendtner

      Accepted manuscript online: 13 JAN 2015 10:11AM EST | DOI: 10.1002/prot.24757

    6. Conserved movement of TMS11 between occluded conformations of LacY and XylE of the Major Facilitator Superfamily suggests a similar hinge-like mechanism

      Åke Västermark, Adelle Driker, Jiaqi Li and Milton H. Saier Jr.

      Accepted manuscript online: 13 JAN 2015 10:07AM EST | DOI: 10.1002/prot.24755

  4. Structure Notes

    1. The crystal structure of the catalytic domain of the Ser/Thr kinase PknA from M. tuberculosis shows an Src-like autoinhibited conformation

      Tristan Wagner, Matthieu Alexandre, Rosario Duran, Nathalie Barilone, Annemarie Wehenkel, Pedro M. Alzari and Marco Bellinzoni

      Accepted manuscript online: 13 JAN 2015 09:31AM EST | DOI: 10.1002/prot.24754

  5. Research Articles

    1. Structure of the terminal PCP domain of the non-ribosomal peptide synthetase in teicoplanin biosynthesis

      Kristina Haslinger, Christina Redfield and Max J. Cryle

      Accepted manuscript online: 13 JAN 2015 08:21AM EST | DOI: 10.1002/prot.24758

    2. Prediction of VH-VL domain orientation for antibody variable domain modeling

      Alexander Bujotzek, James Dunbar, Florian Lipsmeier, Wolfgang Schäfer, Iris Antes, Charlotte M. Deane and Guy Georges

      Accepted manuscript online: 13 JAN 2015 07:56AM EST | DOI: 10.1002/prot.24756

    3. CASP10 – BCL::Fold efficiently samples topologies of large proteins

      Sten Heinze, Daniel Putnam, Axel Fischer, Tim Kohlmann, Brian Weiner and Jens Meiler

      Accepted manuscript online: 10 JAN 2015 01:16AM EST | DOI: 10.1002/prot.24733

    4. Characterization of the differences in the cyclopiazonic acid binding mode to mammalian and P. falciparum Ca2+ pumps: a computational study

      Daniele Di Marino, Ilda D'Annessa, Andrea Coletta, Allegra Via and Anna Tramontano

      Accepted manuscript online: 10 JAN 2015 01:16AM EST | DOI: 10.1002/prot.24734

    5. You have full text access to this OnlineOpen article
      Key mutations stabilize antigen-binding conformation during affinity maturation of a broadly neutralizing influenza antibody lineage

      Huafeng Xu, Aaron G. Schmidt, Timothy O'donnell, Matthew D. Therkelsen, Thomas B Kepler, M. Anthony Moody, Barton F Haynes, Hua-Xin Liao, Stephen C. Harrison and David E. Shaw

      Accepted manuscript online: 18 DEC 2014 04:13PM EST | DOI: 10.1002/prot.24745

    6. Structural templates for comparative protein docking

      Ivan Anishchenko, Petras J. Kundrotas, Alexander V. Tuzikov and Ilya A. Vakser

      Accepted manuscript online: 9 DEC 2014 01:37AM EST | DOI: 10.1002/prot.24736

    7. Modulation of HIV protease flexibility by the T80N mutation

      Hao Zhou, Shangyang Li, John Badger, Ellen Nalivaika, Yufeng Cai, Jennifer Foulkes-Murzycki, Celia Schiffer and Lee Makowski

      Accepted manuscript online: 9 DEC 2014 01:36AM EST | DOI: 10.1002/prot.24737

    8. The chloroplast outer envelope protein P39 in Arabidopsis thaliana belongs to the Omp85 protein family

      Yi-Ching Hsueh, Nadine Flinner, Lucia E. Gross, Raimund Haarmann, Oliver Mirus, Maik S. Sommer and Enrico Schleiff

      Accepted manuscript online: 17 NOV 2014 06:28AM EST | DOI: 10.1002/prot.24725

    9. Structure and dynamics of DRD4 bound to an agonist and an antagonist using in silico approaches

      Nidhi Jatana, Lipi Thukral and N. Latha

      Accepted manuscript online: 5 NOV 2014 12:28AM EST | DOI: 10.1002/prot.24716

    10. The near-symmetry of proteins

      Maayan Bonjack and David Avnir

      Accepted manuscript online: 30 OCT 2014 04:06AM EST | DOI: 10.1002/prot.24706

    11. TGP, an extremely stable, non-aggregating fluorescent protein created by structure-guided surface engineering

      Devin W. Close, Craig Don Paul, Patricia S. Langan, Matthew C.J. Wilce, Daouda A.K. Traore, Randal Halfmann, Reginaldo C. Rocha, Geoffery S. Waldo, Riley J. Payne, Joseph B. Rucker, Mark Prescott and Andrew R.M. Bradbury

      Accepted manuscript online: 7 OCT 2014 02:45AM EST | DOI: 10.1002/prot.24699

    12. Allosteric sites can be identified based on the residue-residue interaction energy difference

      Xiaomin Ma, Yifei Qi and Luhua Lai

      Accepted manuscript online: 3 SEP 2014 11:15AM EST | DOI: 10.1002/prot.24681

    13. Site-specific recombination of nitrogen-fixation genes in cyanobacteria by XisF-XisH-XisI complex: Structures and models

      William C. Hwang, James W. Golden, Jaime Pascual, Dong Xu, Anton Cheltsov and Adam Godzik

      Accepted manuscript online: 1 SEP 2014 10:01AM EST | DOI: 10.1002/prot.24679

    14. Finding off-targets, biological pathways & target diseases for chymase inhibitors via structure-based systems biology approach

      Mahreen Arooj, Sugunadevi Sakkiah, Guang ping Cao, Songmi Kim, Venkatesh Arulalapperumal and Keun Woo Lee

      Accepted manuscript online: 21 AUG 2014 02:22AM EST | DOI: 10.1002/prot.24677

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