Proteins: Structure, Function, and Bioinformatics

Cover image for Vol. 85 Issue 7

Edited By: Bertrand Garcia-Moreno

Impact Factor: 2.289

ISI Journal Citation Reports © Ranking: 2016: 43/72 (Biophysics); 184/286 (Biochemistry & Molecular Biology)

Online ISSN: 1097-0134

Structure Notes 2008


Volume 73, Issue 4
1047-1052

The crystal structure of human cleavage and polyadenylation specific factor-5 reveals a dimeric Nudix protein with a conserved catalytic site
Lionel Trésaugues, Pål Stenmark, Herwig Schüler, Susanne Flodin, Martin Welin, Tomas Nyman, Martin Hammarström, Martin Moche, Susanne Gräslund, Pär Nordlund
Abstract PDF Full Text (Size: 337k) HTML Full Text
Published Online: 2 Sep 2008
DOI 10.1002/prot.22198

1053-1057

Crystal structure of TTHA1429, a novel metallo-β-lactamase superfamily protein from Thermus thermophilus HB8
Akihiro Yamamura, Jun Ohtsuka, Keiko Kubota, Yoshihiro Agari, Akio Ebihara, Noriko Nakagawa, Koji Nagata, Masaru Tanokura
Abstract PDF Full Text (Size: 215k) HTML Full Text
Published Online: 19 Aug 2008
DOI 10.1002/prot.22215

1058-1062

Crystal structure of glutathione-dependent phospholipid peroxidase Hyr1 from the yeast Saccharomyces cerevisiae
Wen-Juan Zhang, Yong-Xing He, Zhu Yang, Jiang Yu, Yuxing Chen, Cong-Zhao Zhou
Abstract PDF Full Text (Size: 203k) HTML Full Text
Published Online: 2 Sep 2008
DOI 10.1002/prot.22220

1063-1067

X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8
Yoshihiro Agari, Shigeyuki Yokoyama, Seiki Kuramitsu, Akeo Shinkai
Abstract PDF Full Text (Size: 246k) HTML Full Text
Published Online: 17 Sep 2008
DOI 10.1002/prot.22244

1068-1071

Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3
Ken-ichi Miyazono, Yozo Nishimura, Yoriko Sawano, Tsukasa Makino, Masaru Tanokura
Abstract PDF Full Text (Size: 246k) HTML Full Text
Published Online: 2 Sep 2008
DOI 10.1002/prot.22231

1072-1075

Crystal structure of an alkaline serine protease from Nesterenkonia sp. defines a novel family of secreted bacterial proteases
Na Yang, Jie Nan, Erik Brostromer, Rajni Hatti-Kaul, Xiao-Dong Su
Abstract PDF Full Text (Size: 253k) HTML Full Text
Published Online: 2 Sep 2008
DOI 10.1002/prot.22233

1076-1081

The crystal structure and identification of NQM1/YGR043C, a transaldolase from Saccharomyces cerevisiae
Hua Huang, Hui Rong, Xu Li, Shuilong Tong, Zhiqiang Zhu, Liwen Niu, Maikun Teng
Abstract PDF Full Text (Size: 225k) HTML Full Text
Published Online: 2 Sep 2008
DOI 10.1002/prot.22237

1082-1087

Structure of the OSR1 kinase, a hypertension drug target
Fabrizio Villa, Maria Deak, Dario R. Alessi, Daan M. F. van Aalten
Abstract PDF Full Text (Size: 307k) HTML Full Text
Published Online: 2 Sep 2008
DOI 10.1002/prot.22238

Volume 73, Issue 3
784-787

Crystal structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558
Karen M. Ruane, Gideon J. Davies, Carlos Martinez-Fleites
Abstract PDF Full Text (Size: 421k) HTML Full Text
Published Online: 19 Aug 2008
DOI 10.1002/prot.22171

788-793

Crystal structure of engineered -glucosidase from a soil metagenome β
Ki Hyun Nam, Soo-Jin Kim, Min-Young Kim, Jae Hee Kim, Yun-Soo Yeo, Chang-Muk Lee, Hong-Ki Jun, Kwang Yeon Hwang
Abstract PDF Full Text (Size: 352k) HTML Full Text
Published Online: 19 Aug 2008
DOI 10.1002/prot.22199

Volume 73, Issue 1
254-258

Crystal structure of human phosphomavelonate kinase at 1.8 Å resolution
Qing Chang, Xiao-Xue Yan, Shen-Yan Gu, Jun-Feng Liu, Dong-Cai Liang
Abstract PDF Full Text (Size: 421k) HTML Full Text
Published Online: 10 Jul 2008
DOI 10.1002/prot.22151

259-264

Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8
Rihito Morita, Hirohito Ishikawa, Noriko Nakagawa, Seiki Kuramitsu, Ryoji Masui
Abstract PDF Full Text (Size: 352k) HTML Full Text
Published Online: 10 Jul 2008
DOI 10.1002/prot.22158

265-268

Structure of HP0564 from Helicobacter pylori identifies it as a new transcriptional regulator
Rihito Morita, Hirohito Ishikawa, Noriko Nakagawa, Seiki Kuramitsu, Ryoji Masui
Abstract PDF Full Text (Size: 296k) HTML Full Text
Published Online: 11 Jul 2008
DOI 10.1002/prot.22159

Volume 72, Issue 4
1363-1370

Crystal structure of YlqF, a circularly permuted GTPase: Implications for its GTPase activation in 50 S ribosomal subunit assembly
Do Jin Kim, Jun Young Jang, Hye-Jin Yoon, Se Won Suh
Abstract PDF Full Text (Size: 840k) HTML Full Text
Published Online: 5 Jun 2008
DOI 10.1002/prot.22122

1371-1376

The crystal structure of the ING5 PHD finger in complex with an H3K4me3 histone peptide
Karen S. Champagne, Nehmé Saksouk, Pedro V. Peña, Kyle Johnson, Mukta Ullah, Xiang-Jiao Yang, Jacques Côté, Tatiana G. Kutateladze
Abstract PDF Full Text (Size: 352k) HTML Full Text
Published Online: 11 Jul 2008
DOI 10.1002/prot.22140


Volume 72, Issue 3
1066-1070

Crystal structure of a PduO-type ATP:cobalamin adenosyltransferase from Burkholderia thailandensis
Jin Ho Moon, Ae Kyung Park, Eun Hyuk Jang, Heenam Stanley Kim, Young Min Chi
Abstract PDF Full Text (Size: 363k) HTML Full Text
Published Online: 12 May 2008
DOI 10.1002/prot.22084

1071-1076

Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily
Dan Li, Cong Liu, Yu-He Liang, Lan-Fen Li, Xiao-Dong Su
Abstract PDF Full Text (Size: 668k) HTML Full Text
Published Online: 12 May 2008
DOI 10.1002/prot.22093

1071-1076

Glutathionylation-triggered conformational changes of glutaredoxin Grx1 from the yeast Saccharomyces cerevisiae
Jiang Yu, Nan-Nan Zhang, Pei-Dong Yin, Pei-Xin Cui, Cong-Zhao Zhou
Abstract PDF Full Text (Size: 781k) HTML Full Text
Published Online: 12 May 2008
DOI 10.1002/prot.22096

1084-1088

Crystal structure of QueC from Bacillus subtilis : An enzyme involved in preQ 1 biosynthesis
Nenad Cicmil, Raven H. Huang
Abstract PDF Full Text (Size: 543k) HTML Full Text
Published Online: 19 May 2008
DOI 10.1002/prot.22098

   1089-1095

Crystal structures of the Mycobacterium tuberculosis secretory antigen alanine dehydrogenase (Rv2780) in apo and ternary complex forms captures "open" and "closed" enzyme conformations
 Sarvind Mani Tripathi, Ravishankar Ramachandran
Abstract PDF Full Text (Size 379k) HTML Full Text
Published Online: 19 May 2008
DOI 10.1002/prot.22101

1084-1088

Crystal structure of QueC from Bacillus subtilis : An enzyme involved in preQ 1 biosynthesis
Nenad Cicmil, Raven H. Huang
Abstract PDF Full Text (Size: 543k) HTML Full Text
Published Online: 19 May 2008
DOI 10.1002/prot.22098


Volume 72, Issue 2
1104-1107

The NMR solution structure of the artificial protein M7 matches the computationally designed model
Claudius Stordeur, Roman Dallüge, Olaf Birkenmeier, Hans Wienk, Rainer Rudolph, Christian Lange, Christian Lücke
Abstract PDF Full Text (Size: 354k) HTML Full Text
Published Online: 22 May 2008
DOI 10.1002/prot.22095

804-808

Crystal structure of the putative carbohydrate recognition domain of human galectin-related protein
Martin Andreas Wälti, Stéphane Thore, Markus Aebi, Markus Künzler
Abstract PDF Full Text (Size: 283k) HTML Full Text
Published Online: 23 Apr 2007
DOI 10.1002/prot.22078

Volume 72, Issue 1
498-505

RhoB can adopt a Mg 2+ free conformation prior to GEF binding
Meera Soundararajan, Andrew Turnbull, Oleg Fedorov, Catrine Johansson, Declan A. Doyle
Abstract PDF Full Text (Size: 283k) HTML Full Text
Published Online: 7 Apr 2007
DOI 10.1002/prot.22017

506-509

The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an α/β-fold characteristic of nucleotide-utilizing enzymes
Kinlin L. Chao, Kap Lim, Christopher Lehmann, Victoria Doseeva, Andrew J. Howard, Fredrick P. Schwarz, Osnat Herzberg
Abstract PDF Full Text (Size: 328k) HTML Full Text
Published Online: 7 Apr 2008
DOI 10.1002/prot.22046

510-518

Crystal structure of PAE0151 from Pyrobaculum aerophilum , a PIN-domain (VapC) protein from a toxin-antitoxin operon
Richard D. Bunker, Joanna L. McKenzie, Edward N. Baker, Vickery L. Arcus
Abstract PDF Full Text (Size: 196k) HTML Full Text
Published Online: 8 Apr 2008
DOI 10.1002/prot.22048

519-525

Crystal structure of the methyltransferase domain of human TARBP1
Hong Wu, Jinrong Min, Hong Zeng, Alexander N. Plotnikov
Abstract PDF Full Text (Size: 340k) HTML Full Text
Published Online: 15 Apr 2008
DOI 10.1002/prot.22065

526-530

Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis
James M. Aramini, Seema Sharma, Yuanpeng J. Huang, G. V. T. Swapna, Chi Kent Ho, Karishma Shetty, Kellie Cunningham, Li-Chung Ma, Li Zhao, Leah A. Owens, Mei Jiang, Rong Xiao, Jinfeng Liu, Michael C. Baran, Thomas B. Acton, Burkhard Rost, Gaetano T. Montelione
Abstract PDF Full Text (Size: 340k) HTML Full Text
Published Online: 22 Apr 2008
DOI 10.1002/prot.22064

531-536

Crystal structure of Tflp: A ferredoxin-like metallo-β-lactamase superfamily protein from Thermoanaerobacter tengcongensis1
Shen-Yan Gu, Xiao-Xue Yan, Dong-Cai Liang
Abstract PDF Full Text (Size: 340k) HTML Full Text
Published Online: 22 Apr 2008
DOI 10.1002/prot.22069

Volume 71, Issue 4
2091-2096

Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals
Suk-Youl Park, Woo-Ram Lee, Suk-Chan Lee, Myung-Hee Kwon, Yong-Sung Kim, Jeong-Sun Kim
Abstract

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