Concurrency and Computation: Practice and Experience

Cover image for Vol. 29 Issue 14

Edited By: Geoffrey C. Fox and David W. Walker

Impact Factor: 1.133

ISI Journal Citation Reports © Ranking: 2016: 62/104 (Computer Science Theory & Methods); 66/106 (Computer Science Software Engineering)

Online ISSN: 1532-0634

Associated Title(s): Journal of Software: Evolution and Process, Software Focus, Software Testing, Verification and Reliability, Software: Practice and Experience, Theory and Practice of Object Systems

Virtual Issue: Latest Advances in Distributed, Parallel, and GPU-accelerated Approaches to Computational Biology


Latest Advances in Distributed, Parallel, and GPU-accelerated Approaches to Computational Biology

Latest Advances in Distributed, Parallel, and GPU-accelerated Approaches to Computational Biology
Ivan Merelli, Horacio Pérez-Sánchez, Sandra Gesing and Daniele D'Agostino

PAR-3D-BLAST: A Parallel Tool for Searching and Aligning Protein Structures
Ahmad Salah and Kenli Li

Highly Parallelized Inference of Large Genome-Based Phylogenies
Jan P. Meier-Kolthoff, Alexander F. Auch, Hans-Peter Klenk and Markus Göker

A Case Study for Biochemical Application Porting in European Grids and Clouds
Attila Kertesz, Ferenc Otvos and Peter Kacsuk

Standards-based Metadata Management for Molecular Simulations
Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang E. Nagel, Malcolm Atkinson and Jens Krüger

Large scale virtual screening experiments on Windows Azure-based cloud resources
Tamas Kiss, Peter Borsody, Gabor Terstyanszky, Stephen Winter, Pamela Greenwell, Sharron McEldowney and Hans Heindl

Discovering Biological Knowledge by Integrating High Throughput Data and Scientific Literature on the Cloud
C. Spampinato, I. Kavasidis, M. Aldinucci, C. Pino, D. Giordano and A. Faro

A Performance/Cost Model for a CUDA Drug Discovery Application on Physical and Public Cloud Infrastructures
Ginés D. Guerrero, Richard M. Wallace, José L. Vázquez-Poletti, José M. Cecilia, José M. García, Daniel Mozos and Horacio Pérez-Sánchez

GPU accelerated techniques for bio-inspired computation in the primary visual cortex
Manuela Chessa and Giulia Pasquale

CUDA Accelerated Molecular Surface Generation
Daniele D'Agostino, Andrea Clematis, Sergio Decherchi, Walter Rocchia, Luciano Milanesi and Ivan Merelli

Towards Energy Efficiency in Heterogeneous Processors: Findings on Virtual Screening Methods
Ginés D. Guerrero, Juan M. Cebrián, Horacio Pérez-Sánchez, José M. García, Manuel Ujaldón and José M. Cecilia

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