Cover image for Vol. 14 Issue 16

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Michael J. Dunn

Impact Factor: 3.973

ISI Journal Citation Reports © Ranking: 2013: 14/78 (BIOCHEMICAL RESEARCH METHODS); 87/291 (Biochemistry & Molecular Biology)

Online ISSN: 1615-9861

Associated Title(s): PROTEOMICS - Clinical Applications


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  1. Research Articles

    1. Exosome-mediated extracellular release of polyadenylate-binding protein 1 in human metastatic duodenal cancer cells

      Keiichi Ohshima, Kaori Kanto, Keiichi Hatakeyama, Tomomi Ide, Kanako Wakabayashi-Nakao, Yuko Watanabe, Naoki Sakura, Masanori Terashima, Ken Yamaguchi and Tohru Mochizuki

      Article first published online: 1 SEP 2014 | DOI: 10.1002/pmic.201300477

    2. Middle-down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post-translational modifications in histones

      Simone Sidoli, Veit Schwämmle, Chrystian Ruminowicz, Thomas A. Hansen, Xudong Wu, Kristian Helin and Ole N. Jensen

      Article first published online: 28 AUG 2014 | DOI: 10.1002/pmic.201400084

  2. Review

  3. Reviews

    1. Comparative profiling of the sperm proteome

      Ashling Holland and Kay Ohlendieck

      Article first published online: 26 AUG 2014 | DOI: 10.1002/pmic.201400032

  4. Dataset Brief

    1. Proteomics analysis of adult testis from Bombyx mori

      Yan Zhang, Zhaoming Dong, Peiming Gu, Weiwei Zhang, Dandan Wang, Xiaomeng Guo, Ping Zhao and Qingyou Xia

      Article first published online: 22 AUG 2014 | DOI: 10.1002/pmic.201300507

  5. Research Articles

    1. Comprehensive proteomic analysis of a Chinese 2-herb formula (Astragali Radix and Rehmanniae Radix) on mature endothelial cells

      Jacqueline Chor Wing Tam, Chun Hay Ko, Cheng Zhang, Hua Wang, Ching Po Lau, Wai Yee Chan, Ping Chung Leung, Kwok Pui Fung, Jin Fang Zhang and Clara Bik San Lau

      Article first published online: 21 AUG 2014 | DOI: 10.1002/pmic.201300547

  6. Standardization and Guidelines

    1. How to submit MS proteomics data to ProteomeXchange via the PRIDE database

      Tobias Ternent, Attila Csordas, Da Qi, Guadalupe Gómez-Baena, Robert J. Beynon, Andrew R. Jones, Henning Hermjakob and Juan Antonio Vizcaíno

      Article first published online: 21 AUG 2014 | DOI: 10.1002/pmic.201400120

  7. Research Articles

    1. MALDI imaging mass spectrometry: Discrimination of pathophysiological regions in traumatized skeletal muscle by characteristic peptide signatures

      Oliver Klein, Kristin Strohschein, Grit Nebrich, Janina Oetjen, Dennis Trede, Herbert Thiele, Theodore Alexandrov, Patrick Giavalisco, Georg N. Duda, Philipp von Roth, Sven Geissler, Joachim Klose and Tobias Winkler

      Article first published online: 21 AUG 2014 | DOI: 10.1002/pmic.201400088

    2. Protein interactomics based on direct molecular fishing on paramagnetic particles: Practical realization and further SPR validation

      Alexis S. Ivanov, Alexei Medvedev, Pavel Ershov, Andrey Molnar, Yury Mezentsev, Evgeny Yablokov, Leonid Kaluzhsky, Oksana Gnedenko, Olga Buneeva, Irina Haidukevich, Gennadiy Sergeev, Aliaksandr Lushchyk, Alexey Yantsevich, Marina Medvedeva, Sergey Kozin, Igor Popov, Svetlana Novikova, Victor Zgoda, Andrey Gilep, Sergey Usanov, Andrey Lisitsa and Alexander Archakov

      Article first published online: 21 AUG 2014 | DOI: 10.1002/pmic.201400117

    3. Proteomics of rice and Cochliobolus miyabeanus fungal interaction: Insight into proteins at intracellular and extracellular spaces

      Jin Yeong Kim, Jingni Wu, Soon Jae Kwon, Haram Oh, So Eui Lee, Sang Gon Kim, Yiming Wang, Ganesh Kumar Agrawal, Randeep Rakwal, Kyu Young Kang, Il-Pyung Ahn, Beom-Gi Kim and Sun Tae Kim

      Article first published online: 21 AUG 2014 | DOI: 10.1002/pmic.201400066

    4. Effects of GnRH antagonist on endometrial protein profiles in the window of implantation

      Yan Meng, Yueshuai Guo, Yi Qian, Xuejiang Guo, Li Gao, Jiahao Sha, Yugui Cui, Ri-Cheng Chian and Jiayin Liu

      Article first published online: 21 AUG 2014 | DOI: 10.1002/pmic.201400145

  8. Technical Brief

    1. Label-free profiling of skeletal muscle using high-definition mass spectrometry

      Jatin G. Burniston, Joanne Connolly, Heikki Kainulainen, Steven L. Britton and Lauren G. Koch

      Article first published online: 19 AUG 2014 | DOI: 10.1002/pmic.201400118

  9. Accelerated Articles

    1. Extracellular Ser/Thr/Tyr phosphorylated proteins of Pseudomonas aeruginosa PA14 strain

      Tassadit Ouidir, Frédérique Jarnier, Pascal Cosette, Thierry Jouenne and Julie Hardouin

      Article first published online: 19 AUG 2014 | DOI: 10.1002/pmic.201400190

  10. Dataset Brief

    1. Identification of inositol 1,4,5-trisphosphate-binding proteins by heparin-agarose affinity purification and LTQ ORBITRAP MS in Oryza sativa

      Yanli Nie, Feifei Huang, Shujun Dong, Lin Li, Ping Gao, Heping Zhao, Yingdian Wang and Shengcheng Han

      Article first published online: 19 AUG 2014 | DOI: 10.1002/pmic.201400042

  11. Reviews

    1. A new look at drugs targeting malignant melanoma—An application for mass spectrometry imaging

      Yutaka Sugihara, Ákos Végvári, Charlotte Welinder, Göran Jönsson, Christian Ingvar, Lotta Lundgren, Håkan Olsson, Thomas Breslin, Elisabet Wieslander, Thomas Laurell, Melinda Rezeli, Bo Jansson, Toshihide Nishimura, Thomas E. Fehniger, Bo Baldetorp and György Marko-Varga

      Article first published online: 18 AUG 2014 | DOI: 10.1002/pmic.201300476

  12. Research Articles

    1. Proteomic approaches to sexual development mediated by antheridiogen in the fern Blechnum spicant L

      Luis Valledor, Virginia Menéndez, María Jesús Canal, Angeles Revilla and Helena Fernández

      Article first published online: 13 AUG 2014 | DOI: 10.1002/pmic.201300166

  13. Dataset Brief

  14. Research Articles

    1. Rapid and sensitive profiling and quantification of the human cell line proteome by LC-MS/MS without prefractionation

      Xuefei Yin, Xiaohui Liu, Yang Zhang, Guoquan Yan, Fang Wang, Haojie Lu, Huali Shen and Pengyuan Yang

      Article first published online: 13 AUG 2014 | DOI: 10.1002/pmic.201300510

    2. Why less is more when generating tryptic peptides in bottom-up proteomics

      Siri Hildonen, Trine Grønhaug Halvorsen and Léon Reubsaet

      Article first published online: 13 AUG 2014 | DOI: 10.1002/pmic.201300479

  15. Reviews

    1. Direct analytical sample quality assessment for biomarker investigation: Qualifying cerebrospinal fluid samples

      Viviana Greco, Damiana Pieragostino, Cristian Piras, Ruedi Aebersold, Jens Wiltfang, Carlo Caltagirone, Sergio Bernardini and Andrea Urbani

      Article first published online: 8 AUG 2014 | DOI: 10.1002/pmic.201300565

  16. Technical Brief

    1. Performance of super-SILAC based quantitative proteomics for comparison of different acute myeloid leukemia (AML) cell lines

      Elise Aasebø, Marc Vaudel, Olav Mjaavatten, Gro Gausdal, Arthur Van der Burgh, Bjørn Tore Gjertsen, Stein Ove Døskeland, Øystein Bruserud, Frode S. Berven and Frode Selheim

      Article first published online: 8 AUG 2014 | DOI: 10.1002/pmic.201300448

  17. Research Articles

    1. Quantitative proteomic study of myocardial mitochondria in urea transporter B knockout mice

      Yanwei Du, Yan Meng, Jun Zhu, Le Kang, Xiaolong Jia, Lirong Guo, Ling Zhang, Mingliang Ye, Lianghai Hu, Xuejian Zhao, Jingkai Gu, Baoxue Yang and Hanfa Zou

      Article first published online: 8 AUG 2014 | DOI: 10.1002/pmic.201400123

  18. Reviews

    1. Posttranslational modifications of human histone H3: An update

      Yan-Ming Xu, Ji-Ying Du and Andy T. Y. Lau

      Article first published online: 8 AUG 2014 | DOI: 10.1002/pmic.201300435

  19. Research Articles

    1. SILAC-based quantitative proteomic analysis of secretome between activated and reverted hepatic stellate cells

      Hongyu Zhang, Peng Wu, Fangyan Chen, Yunwei Hao, Yuanxiang Lao, Liangliang Ren, Longqin Sun, Wei Sun, Handong Wei, Daniel W. Chan, Ying Jiang and Fuchu He

      Article first published online: 4 AUG 2014 | DOI: 10.1002/pmic.201300539

  20. Technical Briefs

    1. You have full text access to this OnlineOpen article
      ScreenCap3: Improving prediction of caspase-3 cleavage sites using experimentally verified noncleavage sites

      Szu-Chin Fu, Kenichiro Imai, Tatsuya Sawasaki and Kentaro Tomii

      Article first published online: 4 AUG 2014 | DOI: 10.1002/pmic.201400002

  21. Research Articles

    1. Probing phosphorylation-dependent protein interactions within functional domains of histone deacetylase 5 (HDAC5)

      Amanda J. Guise, Rommel A. Mathias, Elizabeth A. Rowland, Fang Yu and Ileana M. Cristea

      Article first published online: 24 JUL 2014 | DOI: 10.1002/pmic.201400092

    2. Identification of novel Drosophila centromere-associated proteins

      Teresa K. Barth, Georg O. M. Schade, Andreas Schmidt, Irene Vetter, Marc Wirth, Patrick Heun, Andreas W. Thomae and Axel Imhof

      Article first published online: 14 JUL 2014 | DOI: 10.1002/pmic.201400052

    3. Development and performance evaluation of an ultralow flow nanoliquid chromatography-tandem mass spectrometry set-up

      Thomas Köcher, Peter Pichler, Mauro De Pra, Laurent Rieux, Remco Swart and Karl Mechtler

      Article first published online: 14 JUL 2014 | DOI: 10.1002/pmic.201300418

    4. Proteomic and phosphoproteomic analyses of chromatin-associated proteins from Arabidopsis thaliana

      Jean Bigeard, Naganand Rayapuram, Ludovic Bonhomme, Heribert Hirt and Delphine Pflieger

      Article first published online: 10 JUL 2014 | DOI: 10.1002/pmic.201400072

  22. Reviews

    1. Phosphorylation-dependent regulation of plant chromatin and chromatin-associated proteins

      Jean Bigeard, Naganand Rayapuram, Delphine Pflieger and Heribert Hirt

      Article first published online: 10 JUL 2014 | DOI: 10.1002/pmic.201400073

  23. Technical Brief

  24. Research Articles

    1. Site-specific human histone H3 methylation stability: fast K4me3 turnover

      Yupeng Zheng, Jeremiah D. Tipton, Paul M. Thomas, Neil L. Kelleher and Steve M. M. Sweet

      Article first published online: 9 JUL 2014 | DOI: 10.1002/pmic.201400060

    2. Unraveling the specificities of the different human methionine sulfoxide reductases

      Elien Vandermarliere, Bart Ghesquière, Veronique Jonckheere, Kris Gevaert and Lennart Martens

      Article first published online: 28 MAY 2014 | DOI: 10.1002/pmic.201300357

  25. Viewpoint

    1. Elongator and SPT4/SPT5 complexes as proxy to study RNA polymerase II transcript elongation control of plant development

      Mieke Van Lijsebettens, Julius Dürr, Magdalena Woloszynska and Klaus D. Grasser

      Article first published online: 22 MAY 2014 | DOI: 10.1002/pmic.201400024

  26. Research Articles

    1. MBD5 and MBD6 interact with the human PR-DUB complex through their methyl-CpG-binding domain

      H. Irem Baymaz, Alexandra Fournier, Sophie Laget, Zongling Ji, Pascal W.T.C. Jansen, Arne H. Smits, Laure Ferry, Anneloes Mensinga, Ina Poser, Andrew Sharrocks, Pierre-Antoine Defossez and Michiel Vermeulen

      Article first published online: 24 APR 2014 | DOI: 10.1002/pmic.201400013


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