PROTEOMICS

Cover image for Vol. 16 Issue 15-16

Editor-in-Chief: Lorna Stimson, Deputy Editor: Lucie Kalvodova

Impact Factor: 4.079

ISI Journal Citation Reports © Ranking: 2015: 13/77 (BIOCHEMICAL RESEARCH METHODS); 75/289 (Biochemistry & Molecular Biology)

Online ISSN: 1615-9861

Associated Title(s): PROTEOMICS - Clinical Applications

Commentaries
commentary

Commentaries are short contributions that refer to another scientific article published in the same issue of the journal and which has been identified as of being of outstanding scientific quality.
During the on-line peer review process, Reviewers are asked to identify articles that they consider deserve to be highlighted in this way.



Salinity affects the proteomics of rice roots and leaves
Jianfu Zhang
Published Online: August 1, 2014
DOI: 10.1002/pmic.201400289
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Highlighed article by Liu et al.:
Comparative proteomic analysis of early salt stress responsive proteins in roots and leaves of rice


Ultraviolet photodissociation enhances top-down mass spectrometry as demonstrated on green fluorescent protein variants
Xibei Dang and Nicolas L. Young
Published Online: April 24, 2014
DOI: 10.1002/pmic.201400114
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Highlighed article by Cannon et al.:
Characterization of green fluorescent proteins by 193 nm ultraviolet photodissociation mass spectrometry


Rapidly maturing field of proteomics: A gateway to studying diseases
Steven E. Schutzer
Published Online: April 14, 2014
DOI: 10.1002/pmic.201400091
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Highlighed article by Smith et al.:
Characterization of individual mouse cerebrospinal fluid proteomes


Proteomics made more accessible
Svein-Ole Mikalsen
Published Online: April 14, 2014
DOI: 10.1002/pmic.201400064
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Highlighed article by Vaudel et al.:
Shedding light on black boxes in protein identification


Protein degradation and phosphorylation after freeze thawing result in spermatozoon dysfunction
Jing Yuan
Published Online: January 25, 2014
DOI: 10.1002/pmic.201300564
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Highlighed article by Wang et al.:
Proteomic characteristics of human sperm cryopreservation


Proteomic mapping for legume nodule organogenesis
Nagib Ahsan and Severin E. Stevenson
Published Online: January 25, 2014
DOI: 10.1002/pmic.201300552
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Highlighed article by Dam et al.:
Proteome reference maps of the Lotus japonicus nodule and root


Understanding control of calcitic biomineralization—Proteomics to the rescue
Maxwell T. Hincke
Published Online: December 16, 2013
DOI: 10.1002/pmic.201300471
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Highlighed article by Sun et al.:
Differential label-free quantitative proteomic analysis of avian eggshell matrix and uterine fluid proteins associated with eggshell mechanical property


Finding the missing link: Disulfide-containing proteins via a high-throughput proteomics approach
Ramzi J. Khairallah and Sakthivel Sadayappan
Published Online: November 20, 2013
DOI: 10.1002/pmic.201300445
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Highlighed article by Zhao et al.:
High throughput screening of disulfide-containing proteins in a complex mixture


Refining spectral library searching
Paul A. Rudnick
Published Online: November 20, 2013
DOI: 10.1002/pmic.201300426
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Highlighed article by Shao et al.:
Refining similarity scoring to enable decoy-free validation in spectral library searching


In macropore tryptic digestion at acidic pH and its implication for proteomics
Alexei E. Medvedev
Published Online: November 4, 2013
DOI: 10.1002/pmic.201300440
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Highlighed article by Gan et al.:
Amino-functionalized macroporous silica for efficient tryptic digestion in acidic solutions


Back to the future—The value of single protein species investigations
Peter R. Jungblut
Published Online: November 4, 2013
DOI: 10.1002/pmic.201300442
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Highlighed article by Kimura et al.:
N-Terminal methylation of proteasome subunit Rpt1 in yeast


Sample preparation for two-dimensional gel electrophoresis: Considering the composition of biological material
Thomas Knigge, Julie Letendre and Tiphaine Monsinjon
Published Online: November 4, 2013
DOI: 10.1002/pmic.201300436
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Highlighed article by Wu et al.:
Evaluation of protein extraction protocols for 2DE in marine ecotoxicoproteomics


Multidimensional separation prior to mass spectrometry: Getting closer to the bottom of the iceberg
Manuel Mayr and Thierry Rabilloud
Published Online: October 8, 2013
DOI: 10.1002/pmic.201300400
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Highlighed article by Atanassov et al.:
Increased proteome coverage by combining PAGE and peptide isoelectric focusing: Comparative study of gel-based separation approaches


Proteomics and PUGNAcity will overcome questioning of insulin resistance induction by nonselective inhibition of O-GlcNAcase
Vanessa Dehennaut and Tony Lefebvre
Published Online: October 8, 2013
DOI: 10.1002/pmic.201300363
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Highlighed article by Lee et al.:
Identification of differentially expressed proteins by treatment with PUGNAc in 3T3-L1 adipocytes through analysis of ATP-binding proteome


Oncogene-induced cellular senescence elicits an anti-Warburg effect
Rosamonde E. Banks
Published Online: September 2, 2013
DOI: 10.1002/pmic.201300335
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Highlighed article by Li et al.:
Oncogene-induced cellular senescence elicits an anti-Warburg effect


Comparative proteomics lends insight into genotype-specific pathogenicity
Michael T. Guarnieri
Published Online: September 2, 2013
DOI: 10.1002/pmic.201300322
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Highlighed article by Murugaiyan et al.:
Two-dimensional proteome reference map of Prototheca zopfii revealed reduced metabolism and enhanced signal transduction as adaptation to an infectious life style


The human eye proteome project
Gilbert S. Omenn
Published Online: August 9, 2013
DOI: 10.1002/pmic.201300255
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Highlighed article by Semba et al.:
The Human Eye Proteome Project: Perspectives on an emerging proteome


Rabbit muscle proteomics: A great leap forward
André Martinho de Almeida
Published Online: August 2, 2013
DOI: 10.1002/pmic.201300205
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Highlighed article by Liu et al.:
Shotgun proteomic analysis of sarcoplasmic reticulum preparations from rabbit skeletal muscle


Progress in the identification of plasma biomarkers of colorectal cancer
Caroline Coghlin and Graeme I. Murray
Published Online: August 2, 2013
DOI: 10.1002/pmic.201300245
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Highlighed article by Choi et al.:
Proteomic and cytokine plasma biomarkers for predicting progression from colorectal adenoma to carcinoma in human patients


When 2D is not enough, go for an extra dimension
Thierry Rabilloud
Published Online: July 18, 2013
DOI: 10.1002/pmic.201300215
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Highlighed article by Colignon et al.:
Evaluation of three-dimensional gel electrophoresis to improve quantitative profiling of complex proteomes


Profilin 1: Do we have a novel proteome-found biomarker predicting response to anticancer therapy?
Ira Skvortsova
Published Online: July 18, 2013
DOI: 10.1002/pmic.201300165
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Highlighed article by Kanaujiya et al.:
Proteomic identification of profilin1 as a co-repressor of estrogen receptor alpha in MCF7 breast cancer cells


Resilience in the proteomics data ecosystem: How the field cares for its data
Lennart Martens
Published Online: June 3, 2013
DOI: 10.1002/pmic.201300118
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Highlighed article by Csordas et al.:
From Peptidome to PRIDE: Public proteomics data migration at a large scale


Histone H4 lysine 16 acetylated isoform synthesis opens new route to biophysical studies
Tej K. Pandita
Published Online: June 3, 2013
DOI: 10.1002/pmic.201300145
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Highlighed article by Kallappagoudar et al.:
Expression, purification and proteomic analysis of recombinant histone H4 acetylated at lysine 16


Nicotine affects pancreatic cell proteomics across species
Christian Dittrich
Published Online: April 18, 2013
DOI: 10.1002/pmic.201300092
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Highlighed article by Paulo et al.:
Cross-species analysis of nicotine-induced proteomic alterations in pancreatic cells


Two-stepping to increase peptide spectra matches in large databases
Mark P. Molloy
Published Online: April 12, 2013
DOI: 10.1002/pmic.201300094
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Highlighed article by Jagtap et al.:
A two-step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies


Searching for partners
Naoyuki Taniguchi
Published Online: Jan 5, 2012
DOI: 10.1002/pmic.201290004
Full Text: PDF 

Highlighed article by Jiang et al.:
A proteomics approach to the cell-surface interactome using the enzyme-mediated activation of radical sources reaction


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