The Plant Journal

Cover image for Vol. 86 Issue 2

Accepted Articles (Accepted, unedited articles published online and citable. The final edited and typeset version of record will appear in future.)

Edited By: Christoph Benning

Impact Factor: 5.972

ISI Journal Citation Reports © Ranking: 2014: 10/204 (Plant Sciences)

Online ISSN: 1365-313X

VIEW

  1. 1 - 39
  1. Resource

    1. System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance

      Lei Wang, Thomas Nägele, Hannes Doerfler, Lena Fragner, Palak Chaturvedi, Ella Nukarinen, Anke Bellaire, Werner Huber, Jakob Weiszmann, Doris Engelmeier, Ziva Ramsak, Kristina Gruden and Wolfram Weckwerth

      Accepted manuscript online: 2 MAY 2016 05:30AM EST | DOI: 10.1111/tpj.13201

  2. Original Articles

    1. Transfer RNA maturation in Chlamydomonas mitochondria, chloroplast and the nucleus by a single RNase P protein

      Géraldine Bonnard, Anthony Gobert, Mathilde Arrivé, Franziska Pinker, Thalia Salinas-Giegé and Philippe Giegé

      Accepted manuscript online: 1 MAY 2016 09:20PM EST | DOI: 10.1111/tpj.13198

    2. Diverse pathways of biosynthesis of phosphatidylcholine in algae as estimated by labeling studies and genomic sequence analysis

      Naoki Sato, Natsumi Mori, Takashi Hirashima and Takashi Moriyama

      Accepted manuscript online: 1 MAY 2016 09:16PM EST | DOI: 10.1111/tpj.13199

    3. Differential effector gene expression underpins epistasis in a plant fungal disease

      Huyen T.T. Phan, Kasia Rybak, Eiko Furuki, Susan Breen, Peter S. Solomon, Richard P. Oliver and Kar-Chun Tan

      Accepted manuscript online: 1 MAY 2016 09:10PM EST | DOI: 10.1111/tpj.13203

    4. Imprinted Gene OsFIE1 Modulates Rice Seed Development by Influencing the Nutrient Metabolism and Modifying Genome H3K27me3

      Xiaolong Huang, Zhanhua Lu, Xin Wang, Yidan Ouyang, Wei Chen, Koulong Xie, Dongying Wang, Min Luo, Jie Luo and Jialing Yao

      Accepted manuscript online: 1 MAY 2016 08:56PM EST | DOI: 10.1111/tpj.13202

    5. Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice

      Koji Miyamoto, Masahiro Fujita, Matthew R. Shenton, Shota Akashi, Chizu Sugawara, Arisa Sakai, Kiyotaka Horie, Morifumi Hasegawa, Hiroshi Kawaide, Wataru Mitsuhashi, Hideaki Nojiri, Hisakazu Yamane, Nori Kurata, Kazunori Okada and Tomonobu Toyomasu

      Accepted manuscript online: 1 MAY 2016 08:55PM EST | DOI: 10.1111/tpj.13200

    6. Identification of a small protein domain present in all plant lineages that confers high prephenate dehydratase activity

      Jorge El-Azaz, Fernando de la Torre, Concepción Ávila and Francisco M. Cánovas

      Accepted manuscript online: 28 APR 2016 11:36PM EST | DOI: 10.1111/tpj.13195

    7. Root-specific expression of opine genes and opine accumulation in some cultivars of the naturally occurring GMO Nicotiana tabacum

      Ke Chen, François Dorlhac de Borne, Emilie Julio, Julie Obszynski, Patrick Pale and Léon Otten

      Accepted manuscript online: 28 APR 2016 11:36PM EST | DOI: 10.1111/tpj.13196

  3. Resource

    1. Solanum pennellii backcross inbred lines (BILs) link small genomic bins with tomato traits

      Itai Ofner, Justin Lashbrooke, Tzili Pleban, Asaph Aharoni and Dani Zamir

      Accepted manuscript online: 28 APR 2016 03:06AM EST | DOI: 10.1111/tpj.13194

  4. Original Articles

    1. RNA-directed DNA methylation efficiency depends on trigger and target sequence identity

      Athanasios Dalakouras, Elena Dadami, Michèle Wassenegger, Gabi Krczal and Michael Wassenegger

      Accepted manuscript online: 28 APR 2016 02:55AM EST | DOI: 10.1111/tpj.13193

    2. Analysis of gemini pollen 3 mutant suggests a broad function of AUGMIN in microtubule organization during sexual reproduction in Arabidopsis

      Sung-Aeong Oh, Jien Jeon, Hyo-Jin Park, Paul Eivind Grini, David Twell and Soon-Ki Park

      Accepted manuscript online: 28 APR 2016 02:51AM EST | DOI: 10.1111/tpj.13192

    3. HSP90 canonical content organizes a molecular scaffold mechanism to progress flowering

      Theoni Margaritopoulou, Nikoleta Kryovrysanaki, Panagiota Megkoula, Constantinos Prassinos, Despoina Samakovli, Dimitra Milioni and Polydefkis Hatzopoulos

      Accepted manuscript online: 28 APR 2016 02:50AM EST | DOI: 10.1111/tpj.13191

    4. Different flowering response to various fruit loads in apple cultivars correlates with degree of transcript reaccumulation of a TFL1-encoding gene

      Amnon Haberman, Michal Ackerman, Omer Crane, Jean-Jacques Kelner, Evelyne Costes and Alon Samach

      Accepted manuscript online: 28 APR 2016 02:50AM EST | DOI: 10.1111/tpj.13190

  5. Technical Advance

    1. Strategy and software for the statistical spatial analysis of 3D intra-cellular distributions

      Eric Biot, Elizabeth Crowell, Jasmine Burguet, Herman Höfte, Samantha Vernhettes and Philippe Andrey

      Accepted manuscript online: 28 APR 2016 02:41AM EST | DOI: 10.1111/tpj.13189

  6. Original Articles

    1. Auxin-mediated lamina growth in tomato leaves is restricted by two parallel mechanisms

      Hadas Ben-Gera, Asaf Dafna, John Paul Alvarez, Maya Bar, Mareike Mauerer and Naomi Ori

      Accepted manuscript online: 28 APR 2016 02:30AM EST | DOI: 10.1111/tpj.13188

    2. A Glycine soja methionine sulfoxide reductase B5a interacts with the Ca2+/CAM-binding kinase GsCBRLK and activates ROS signaling under carbonate alkaline stress

      Xiaoli Sun, Mingzhe Sun, Bowei Jia, Zhiwei Qin, Kejun Yang, Chao Chen, Qingyue Yu and Yanming Zhu

      Accepted manuscript online: 28 APR 2016 02:25AM EST | DOI: 10.1111/tpj.13187

    3. The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrial orf291 RNA in Arabidopsis

      Sota Fujii, Takamasa Suzuki, Philippe Giegé, Tetsuya Higashiyama, Nobuya Koizuka and Toshiharu Shikanai

      Accepted manuscript online: 28 APR 2016 02:15AM EST | DOI: 10.1111/tpj.13185

    4. P-class pentatricopeptide repeat protein PTSF1 is required for splicing of the plastid pre-tRNAIle in Physcomitrella patens

      Seiya Goto, Yasuhiro Kawaguchi, Chieko Sugita, Mizuho Ichinose and Mamoru Sugita

      Accepted manuscript online: 27 APR 2016 02:30AM EST | DOI: 10.1111/tpj.13184

    5. Photoperiodic and thermosensory pathways interact through CONSTANS to promote flowering at high temperature under short days

      Virginia Fernández, Yasuyuki Takahashi, José LeGourrierec and George Coupland

      Accepted manuscript online: 27 APR 2016 02:20AM EST | DOI: 10.1111/tpj.13183

    6. A Naive Bayesian Classifier for Identifying Plant miRNAs

      S Douglass, S H Hsu, S Cokus, R B Goldberg, J J Harada and M Pellegrini

      Accepted manuscript online: 7 APR 2016 10:07AM EST | DOI: 10.1111/tpj.13180

  7. Resource

    1. The transcriptomic signature of developing soybean seeds reveals genetic basis of seed trait adaptation during domestication

      Xiang Lu, Qing-Tian Li, Qing Xiong, Wei Li, Ying-Dong Bi, Yong-Cai Lai, Xin-Lei Liu, Wei-Qun Man, Wan-Ke Zhang, Biao Ma, Shou-Yi Chen and Jin-Song Zhang

      Accepted manuscript online: 7 APR 2016 10:07AM EST | DOI: 10.1111/tpj.13181

  8. Original Articles

    1. PLURIPETALA mediates ROP2 localization and stability in parallel to SCN1 but synergistically with TIP1 in root hairs

      Sen Chai, Fu-Rong Ge, Qiang-Nan Feng, Sha Li and Yan Zhang

      Accepted manuscript online: 2 APR 2016 06:10AM EST | DOI: 10.1111/tpj.13179

    2. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening

      Xue-ren Yin, Xiu-lan Xie, Xiao-jian Xia, Jing-quan Yu, Ian B. Ferguson, James J. Giovannoni and Kun-song Chen

      Accepted manuscript online: 2 APR 2016 06:06AM EST | DOI: 10.1111/tpj.13178

    3. An essential role of caffeoyl shikimate esterase in monolignol biosynthesis in Medicago truncatula

      Chan Man Ha, Luis Escamilla-Trevino, Juan Carlos Serrani Yarce, Hoon Kim, John Ralph, Fang Chen and Richard A. Dixon

      Accepted manuscript online: 2 APR 2016 06:05AM EST | DOI: 10.1111/tpj.13177

  9. SI Synthetic Biology 2015

    1. Biotechnology and synthetic biology approaches for metabolic engineering of bioenergy crops

      Patrick M Shih, Yan Liang and Dominique Loqué

      Accepted manuscript online: 30 MAR 2016 11:36PM EST | DOI: 10.1111/tpj.13176

  10. Original Articles

    1. Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis

      Fei He, Shinjae Yoo, Daifeng Wang, Sunita Kumari, Mark Gerstein, Doreen Ware and Sergei Maslov

      Accepted manuscript online: 25 MAR 2016 09:45AM EST | DOI: 10.1111/tpj.13175

    2. Identification of genetic variants associated with maize flowering time using an extremely large multi-genetic background population

      Yong-xiang Li, Chunhui Li, Peter J. Bradbury, Xiaolei Liu, Fei Lu, M. Cinta Romay, Jeffrey C. Glaubitz, Xun Wu, Bo Peng, Yunsu Shi, Yanchun Song, Dengfeng Zhang, Edward S. Buckler, Zhiwu Zhang, Yu Li and Tianyu Wang

      Accepted manuscript online: 25 MAR 2016 03:30AM EST | DOI: 10.1111/tpj.13174

  11. SI Synthetic Biology 2015

    1. Extending the biosynthetic repertoires of cyanobacteria and chloroplasts

      Agnieszka Zygadlo Nielsen, Silas Busck Mellor, Konstantinos Vavitsas, Artur Jacek Wlodarczyk, Thiyagarajan Gnanasekaran, Maria Perestrello Ramos H de Jesus, Brian Christopher King, Kamil Bakowski and Poul Erik Jensen

      Accepted manuscript online: 23 MAR 2016 01:11AM EST | DOI: 10.1111/tpj.13173

  12. Special Issue Article

    1. Synthetic Redesign of Plant Lipid Metabolism

      Richard P Haslam, Olga Sayanova, Hae Jin Kim, Edgar B Cahoon and Johnathan A Napier

      Accepted manuscript online: 22 MAR 2016 08:41AM EST | DOI: 10.1111/tpj.13172

  13. Resource

    1. Short interspersed nuclear elements (SINEs) are abundant in Solanaceae and have a family-specific impact on gene structure and genome organization

      Kathrin Martina Seibt, Torsten Wenke, Katja Muders, Bernd Truberg and Thomas Schmidt

      Accepted manuscript online: 21 MAR 2016 07:18AM EST | DOI: 10.1111/tpj.13170

  14. SI Synthetic Biology 2015

    1. Bacterial Microcompartments as Metabolic Modules for Plant Synthetic Biology

      C. Raul Gonzalez-Esquer, Sarah E. Newnham and Cheryl A. Kerfeld

      Accepted manuscript online: 16 MAR 2016 08:51AM EST | DOI: 10.1111/tpj.13166

  15. Original Articles

    1. Hd1,a CONSTANS Orthlog in Rice, Functions as an Ehd1 Repressor Through Interaction with Monocot-Specific CCT-Domain Protein Ghd7

      Yasue Nemoto, Yasunori Nonoue, Masahiro Yano and Takeshi Izawa

      Accepted manuscript online: 15 MAR 2016 10:45PM EST | DOI: 10.1111/tpj.13168

  16. Resource

    1. Transcriptome dynamics of Arabidopsis during sequential biotic and abiotic stresses

      Silvia Coolen, Silvia Proietti, Richard Hickman, Nelson H. Davila Olivas, Ping-Ping Huang, Marcel C. Van Verk, Johan A. Van Pelt, Alexander H.J. Wittenberg, Martin De Vos, Marcel Prins, Joop J.A. Van Loon, Mark G.M. Aarts, Marcel Dicke, Corné M.J. Pieterse and Saskia C.M. Van Wees

      Accepted manuscript online: 15 MAR 2016 10:40PM EST | DOI: 10.1111/tpj.13167

    2. Identification of Multiple Lipid Genes with Modifications in Expression and Sequence Associated with the Evolution of Hydroxy Fatty Acid Accumulation in Physaria fendleri

      Patrick J. Horn, Jinjie Liu, Jean-Christophe Cocuron, Kate McGlew, Nicholas A. Thrower, Matt Larson, Chaofu Lu, Ana Paula Alonso and John Ohlrogge

      Accepted manuscript online: 15 MAR 2016 02:42AM EST | DOI: 10.1111/tpj.13163

  17. Technical Advance

    1. Highly efficient de novo mutant identification in a Sorghum bicolor TILLING population using the ComSeq approach

      Habte Nida, Shula Blum, Dina Zielinski, Dhruv A. Srivastava, Rivka Elbaum, Zhanguo Xin, Yaniv Erlich, Eyal Fridman and Noam Shental

      Accepted manuscript online: 9 MAR 2016 09:15AM EST | DOI: 10.1111/tpj.13161

  18. Original Articles

    1. Structural and functional analysis of tomato β-galactosidase 4: insight into the substrate specificity of the fruit softening-related enzyme

      Masahiro Eda, Takashi Matsumoto, Megumi Ishimaru and Toshiji Tada

      Accepted manuscript online: 9 MAR 2016 09:00AM EST | DOI: 10.1111/tpj.13160

    2. Functional network analysis of genes differentially expressed during xylogenesis in soc1ful woody Arabidopsis plants

      Nicolas Davin, Patrick P. Edger, Charles A. Hefer, Eshchar Mizrachi, Mathias Schuetz, Erik Smets, Alexander A. Myburg, Carl J. Douglas, M. Eric Schranz and Frederic Lens

      Accepted manuscript online: 8 MAR 2016 02:08AM EST | DOI: 10.1111/tpj.13157

  19. SI Synthetic Biology 2015

    1. Towards engineering carboxysomes into C3 plants

      Maureen R. Hanson, Myat T. Lin, A. Elizabete Carmo-Silva and Martin A.J. Parry

      Accepted manuscript online: 12 FEB 2016 03:10AM EST | DOI: 10.1111/tpj.13139

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