Environmental Microbiology

Cover image for Vol. 17 Issue 7

Accepted Articles (Accepted, unedited articles published online and citable. The final edited and typeset version of record will appear in future.)

Edited By: Kenneth N. Timmis, Michael Wagner, Mike Jetten, Victoria Orphan, Martin Polz, Paola Bonfante, Jack A. Gilbert, Rachel Whitaker, and Juan L. Ramos

Impact Factor: 6.24

ISI Journal Citation Reports © Ranking: 2013: 13/119 (Microbiology)

Online ISSN: 1462-2920

Associated Title(s): Environmental Microbiology Reports

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  1. 1 - 41
  1. Research Articles

    1. Gut microbiota richness promotes its stability upon increased dietary fiber intake in healthy adults

      Julien Tap, Jean-Pierre Furet, Martine Bensaada, Catherine Philippe, Hubert Roth, Sylvie Rabot, Omar Lakhdari, Vincent Lombard, Bernard Henrissat, Gerard Corthier, Eric Fontaine, Joël Doré and Marion Leclerc

      Accepted manuscript online: 31 JUL 2015 04:08AM EST | DOI: 10.1111/1462-2920.13006

    2. Fungi associated with rocks of the Atacama Desert: taxonomy, distribution, diversity, ecology and bioprospection for bioactive compounds

      Vívian N. Gonçalves, Charles L. Cantrell, David E. Wedge, Mariana C. Ferreira, Marcos Aurélio Soares, Melissa R. Jacob, Fabio S. Oliveira, Douglas Galante, Fabio Rodrigues, Tânia M.A. Alves, Carlos L. Zani, Policarpo A.S. Junior, Silvane Murta, Alvaro J. Romanha, Emerson C. Barbosa, Erna G. Kroon, Jaquelline G. Oliveira, Benito Gomez-Silva, Alexandra Galetovic, Carlos A. Rosa and Luiz H. Rosa

      Accepted manuscript online: 31 JUL 2015 04:07AM EST | DOI: 10.1111/1462-2920.13005

    3. Phosphatase-mediated bioprecipitation of lead by soil fungi

      Xinjin Liang, Martin Kierans, Andrea Ceci, Stephen Hillier and Geoffrey Michael Gadd

      Accepted manuscript online: 31 JUL 2015 04:07AM EST | DOI: 10.1111/1462-2920.13003

    4. Identification and Characterization of Naturally Occurring DSF-Family Quorum Sensing Signal Turnover System in the Phytopathogen Xanthomonas

      Lian Zhou, Xing-Yu Wang, Shuang Sun, Li-Chao Yang, Bo-Le Jiang and Ya-Wen He

      Accepted manuscript online: 31 JUL 2015 04:07AM EST | DOI: 10.1111/1462-2920.12999

    5. Simulated soil crust conditions in a chamber system provide new insights on cyanobacterial acclimation to desiccation

      Hagai Raanan, Nadav Oren, Haim Treves, Simon M. Berkowicz, Martin Hagemann, Nadin Pade, Nir Keren and Aaron Kaplan

      Accepted manuscript online: 31 JUL 2015 04:07AM EST | DOI: 10.1111/1462-2920.12998

    6. Plasmids from the gut microbiome of cabbage root fly larvae encode SaxA that catalyzes the conversion of the plant toxin 2-phenylethyl isothiocyanate

      Cornelia U. Welte, Rob M. de Graaf, Tijs J.M. van den Bosch, Huub J.M. Op den Camp, Nicole M. van Dam and Mike S.M. Jetten

      Accepted manuscript online: 31 JUL 2015 04:07AM EST | DOI: 10.1111/1462-2920.12997

    7. Chlorobaculum tepidum growth on biogenic S(0) as the sole photosynthetic electron donor

      Thomas E. Hanson, Ernest Bonsu, Amalie Tuerk, Cassandra L. Marnocha, Deborah H. Powell and Clara S. Chan

      Accepted manuscript online: 31 JUL 2015 04:06AM EST | DOI: 10.1111/1462-2920.12995

    8. Histone H3K4 methylation regulates hyphal growth, secondary metabolism, and multiple stress responses in Fusarium graminearum

      Ye Liu, Na Liu, Yanni Yin, Yun Chen, Jinhua Jiang and Zhonghua Ma

      Accepted manuscript online: 31 JUL 2015 04:06AM EST | DOI: 10.1111/1462-2920.12993

    9. Involvement of a caleosin in lipid storage and virulence in the entomopathogenic filamentous fungus, Beauveria bassiana

      Yanhua Fan, Almudena Ortiz-Urquiza, Timothy Garrett, Yan Pei and Nemat O. Keyhani

      Accepted manuscript online: 31 JUL 2015 04:06AM EST | DOI: 10.1111/1462-2920.12990

    10. The dual transcriptional regulator RovM regulates the expression of AR3- and T6SS4-dependent acid survival systems in response to nutritional status in Yersinia pseudotuberculosis

      Yunhong Song, Xiao Xiao, Changfu Li, Tietao Wang, Ruoxi Zhao, Weipeng Zhang, Lei Zhang, Yao Wang and Xihui Shen

      Accepted manuscript online: 31 JUL 2015 03:09AM EST | DOI: 10.1111/1462-2920.12996

  2. Minireviews

    1. You have free access to this content
      Adaptive and acclimative responses of cyanobacteria to far-red light

      Fei Gan and Donald A. Bryant

      Accepted manuscript online: 31 JUL 2015 03:09AM EST | DOI: 10.1111/1462-2920.12992

  3. Research Articles

    1. Seasonality in molecular and cytometric diversity of marine bacterioplankton: the reshuffling of bacterial taxa by vertical mixing

      Francisca C. García, Laura Alonso-Sáez, Xosé Anxelu G. Morán and Ángel López-Urrutia

      Accepted manuscript online: 17 JUL 2015 01:06AM EST | DOI: 10.1111/1462-2920.12984

    2. Freshwater protists do not go with the flow: Population structure in Gonyostomum semen independent of connectivity among lakes

      Ingrid Sassenhagen, Josefin Sefbom, Torbjörn Säll, Anna Godhe and Karin Rengefors

      Accepted manuscript online: 16 JUL 2015 11:00PM EST | DOI: 10.1111/1462-2920.12987

    3. Determinants of bacterial communities in Canadian agroforestry systems

      Samiran Banerjee, Mark Baah-Acheamfour, Cameron N. Carlyle, Andrew Bissett, Alan E. Richardson, Tariq Siddique, Edward Bork and Scott Chang

      Accepted manuscript online: 16 JUL 2015 10:59PM EST | DOI: 10.1111/1462-2920.12986

    4. Microenvironment and Phylogenetic Diversity of Prochloron Inhabiting the Surface of Crustose Didemnid Ascidians

      Daniel A. Nielsen, Mathieu Pernice, Martin Schliep, Gaurav Sablok, Thomas C. Jeffries, Michael Kühl, Daniel Wangpraseurt, Peter J. Ralph and Anthony W.D. Larkum

      Accepted manuscript online: 14 JUL 2015 10:53AM EST | DOI: 10.1111/1462-2920.12983

    5. Rab GTPases are essential for membrane trafficking-dependent growth and pathogenicity in Fusarium graminearum

      Huawei Zheng, Wenhui Zheng, Congxian Wu, Jie Yang, Yang Xi, Qiurong Xie, Xu Zhao, Xiaolong Deng, Guodong Lu, Guangpu Li, Daniel Ebbole, Jie Zhou and Zonghua Wang

      Accepted manuscript online: 14 JUL 2015 09:01AM EST | DOI: 10.1111/1462-2920.12982

    6. Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

      Ye Deng, Ping Zhang, Yujia Qin, Qichao Tu, Yunfeng Yang, Zhili He, Christopher Warren Schadt and Jizhong Zhou

      Accepted manuscript online: 14 JUL 2015 08:58AM EST | DOI: 10.1111/1462-2920.12981

    7. PrfA regulation offsets the cost of Listeria virulence outside the host

      Radhakrishnan B. Vasanthakrishnan, Aitor de las Heras, Mariela Scortti, Caroline Deshayes, Nick Colegrave and José A. Vázquez-Boland

      Accepted manuscript online: 14 JUL 2015 08:53AM EST | DOI: 10.1111/1462-2920.12980

    8. Enhanced salinities, as a proxy of seawater desalination discharges, impact coastal microbial communities of the eastern Mediterranean Sea

      Natalia Belkin, Eyal Rahav, Hila Elifantz, Nurit Kress and Ilana Berman-Frank

      Accepted manuscript online: 14 JUL 2015 08:53AM EST | DOI: 10.1111/1462-2920.12979

    9. Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool

      Weipeng Zhang, Yong Wang, Salim Bougouffa, Renmao Tian, Huiluo Cao, Yongxin Li, Lin Cai, Yue Him Wong, Gen Zhang, Guowei Zhou, Xixiang Zhang, Vladimir B Bajic, Abdulaziz Al-Suwailem and Pei-Yuan Qian

      Accepted manuscript online: 14 JUL 2015 08:53AM EST | DOI: 10.1111/1462-2920.12978

    10. Terroir is a key driver of seed-associated microbial assemblages

      Stephanie Klaedtke, Marie-Agnès Jacques, Lorenzo Raggi, Anne Préveaux, Sophie Bonneau, Valeria Negri, Véronique Chable and Matthieu Barret

      Accepted manuscript online: 14 JUL 2015 08:53AM EST | DOI: 10.1111/1462-2920.12977

    11. Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography

      Ezequiel M. Marzinelli, Alexandra H. Campbell, Enrique Zozaya Valdes, Adriana Vergés, Shaun Nielsen, Thomas Wernberg, Thibaut de Bettignies, Scott Bennett, J. Gregory Caporaso, Torsten Thomas and Peter D. Steinberg

      Accepted manuscript online: 6 JUL 2015 03:15AM EST | DOI: 10.1111/1462-2920.12972

    12. Unravelling the one-carbon metabolism of the acetogen Sporomusa strain An4 by genome and proteome analysis

      Michael Visser, Mervin M. Pieterse, Martijn W. H. Pinkse, Bart Nijsse, Peter D. E. M. Verhaert, Willem M. de Vos, Peter J. Schaap and Alfons J. M. Stams

      Accepted manuscript online: 3 JUL 2015 10:36AM EST | DOI: 10.1111/1462-2920.12973

    13. Metallome of Pseudomonas aeruginosa: a role for siderophores

      Olivier Cunrath, Valérie A. Geoffroy and Isabelle J. Schalk

      Accepted manuscript online: 3 JUL 2015 10:36AM EST | DOI: 10.1111/1462-2920.12971

    14. Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm

      Runar Stokke, Håkon Dahle, Irene Roalkvam, Juliane Wissuwa, Frida Lise Daae, Ave Tooming-Klunderud, Ingunn H. Thorseth, Rolf B. Pedersen and Ida Helene Steen

      Accepted manuscript online: 3 JUL 2015 10:36AM EST | DOI: 10.1111/1462-2920.12970

    15. A two domain protein triggers heat shock pathway and necrosis pathway both in model plant and nematode

      Lifang Ruan, Huihui Wang, Ge Cai, Donghai Peng, Hua Zhou, Jinshui Zheng, Lei Zhu, Xixi Wang, Haoquan Yu, Seng Li, Ce Geng and Ming Sun

      Accepted manuscript online: 3 JUL 2015 10:35AM EST | DOI: 10.1111/1462-2920.12968

    16. Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle

      Aleksandrina Patyshakuliyeva, Harm Post, Miaomiao Zhou, Edita Jurak, Albert J. R. Heck, Kristiina S. Hildén, Mirjam A. Kabel, Miia R. Mäkelä, A. F. Maarten Altelaar and Ronald P. de Vries

      Accepted manuscript online: 28 JUN 2015 11:14PM EST | DOI: 10.1111/1462-2920.12967

    17. The neutral metallopeptidase NMP1 of Trichoderma guizhouense is required for mycotrophy and self-defence

      Jian Zhang, Gunseli Bayram Akcapinar, Lea Atanasova, Mohammad Javad Rahimi, Agnieszka Przylucka, Dongqing Yang, Christian P. Kubicek, Ruifu Zhang, Qirong Shen and Irina S. Druzhinina

      Accepted manuscript online: 28 JUN 2015 11:13PM EST | DOI: 10.1111/1462-2920.12966

    18. Specific global responses to N and Fe nutrition in toxic and non-toxic Microcystis aeruginosa

      Ralitza Alexova, The Cuong Dang, Manabu Fujii, Mark J Raftery, T. David Waite, Belinda C Ferrari and Brett A. Neilan

      Accepted manuscript online: 28 JUN 2015 11:13PM EST | DOI: 10.1111/1462-2920.12958

    19. You have full text access to this OnlineOpen article
      Acclimation of Emiliania huxleyi (1516) to nutrient limitation involves precise modification of the proteome to scavenge alternative sources of N and P

      Boyd A McKew, Gergana Metodieva, Christine A Raines, Metodi V Metodiev and Richard J Geider

      Accepted manuscript online: 28 JUN 2015 11:13PM EST | DOI: 10.1111/1462-2920.12957

  4. Minireview

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      Unconventional membrane lipid biosynthesis in Xanthomonas campestris

      Meriyem Aktas and Franz Narberhaus

      Accepted manuscript online: 28 JUN 2015 11:11PM EST | DOI: 10.1111/1462-2920.12956

  5. Research Articles

    1. Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

      Ramon Massana, Angélique Gobet, Stéphane Audic, David Bass, Lucie Bittner, Christophe Boutte, Aurélie Chambouvet, Richard Christen, Jean-Michel Claverie, Johan Decelle, John R. Dolan, Micah Dunthorn, Bente Edvardsen, Irene Forn, Dominik Forster, Laure Guillou, Olivier Jaillon, Wiebe H.C.F. Kooistra, Ramiro Logares, Frédéric Mahé, Fabrice Not, Hiroyuki Ogata, Jan Pawlowski, Massimo C. Pernice, Ian Probert, Sarah Romac, Thomas Richards, Sébastien Santini, Kamran Shalchian-Tabrizi, Raffaele Siano, Nathalie Simon, Thorsten Stoeck, Daniel Vaulot, Adriana Zingone and Colomban de Vargas

      Accepted manuscript online: 28 JUN 2015 11:11PM EST | DOI: 10.1111/1462-2920.12955

    2. Ocean's twelve: Flagellar and biofilm chromids in the multipartite genome of Marinovum algicola DG898 exemplify functional compartmentalization

      Oliver Frank, Markus Göker, Silke Pradella and Jörn Petersen

      Accepted manuscript online: 16 JUN 2015 05:21AM EST | DOI: 10.1111/1462-2920.12947

    3. Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose

      Masahiro Yuki, Hirokazu Kuwahara, Masaki Shintani, Kazuki Izawa, Tomoyuki Sato, David Starns, Yuichi Hongoh and Moriya Ohkuma

      Accepted manuscript online: 16 JUN 2015 05:18AM EST | DOI: 10.1111/1462-2920.12945

    4. You have full text access to this OnlineOpen article
      Comparative genomics and mutagenesis analyses of choline metabolism in the marine Roseobacter clade

      Ian Lidbury, George Kimberley, David J Scanlan, J Colin Murrell and Yin Chen

      Accepted manuscript online: 9 JUN 2015 05:43AM EST | DOI: 10.1111/1462-2920.12943

    5. Bacterial sensing underlies artificial sweetener-induced growth of gut Lactobacillus

      Kristian Daly, Alistair C Darby, Neil Hall, Mark C Wilkinson, Pisut Pongchaikul, David Bravo and Soraya P Shirazi-Beechey

      Accepted manuscript online: 9 JUN 2015 05:40AM EST | DOI: 10.1111/1462-2920.12942

    6. Species-specific diversity of novel bacterial lineages and differential abundance of predicted pathways for toxic compound degradation in scorpion gut microbiota

      Luis M. Bolaños, Mónica Rosenblueth, Santiago Castillo-Ramírez, Gilles Figuier-Huttin and Esperanza Martínez-Romero

      Accepted manuscript online: 9 JUN 2015 03:38AM EST | DOI: 10.1111/1462-2920.12939

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