Environmental Microbiology

Cover image for Vol. 17 Issue 3

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Kenneth N. Timmis, Michael Wagner, Mike Jetten, Victoria Orphan, Martin Polz, Paola Bonfante, Jack A. Gilbert, Rachel Whitaker, and Juan L. Ramos

Impact Factor: 6.24

ISI Journal Citation Reports © Ranking: 2013: 13/119 (Microbiology)

Online ISSN: 1462-2920

Associated Title(s): Environmental Microbiology Reports

  1. Research Articles

    1. Ice cover extent drives phytoplankton and bacterial community structure in a large north-temperate lake: implications for a warming climate

      B. F. N. Beall, M. R. Twiss, D. E. Smith, B. O. Oyserman, M. J. Rozmarynowycz, C. E. Binding, R. A. Bourbonniere, G. S. Bullerjahn, M. E. Palmer, E. D. Reavie, LCDR M. K. Waters, LCDR W. C. Woityra and R. M. L. McKay

      Article first published online: 27 MAR 2015 | DOI: 10.1111/1462-2920.12819

    2. Fatty acid-releasing activities in Sinorhizobium meliloti include unusual diacylglycerol lipase

      Diana X. Sahonero-Canavesi, Christian Sohlenkamp, Mario Sandoval-Calderón, Anne Lamsa, Kit Pogliano, Isabel M. López-Lara and Otto Geiger

      Article first published online: 27 MAR 2015 | DOI: 10.1111/1462-2920.12814

    3. Evidence for synergistic control of glutamate biosynthesis by glutamate dehydrogenases and glutamate in Bacillus subtilis

      Lorena Stannek, Martin J. Thiele, Till Ischebeck, Katrin Gunka, Elke Hammer, Uwe Völker and Fabian M. Commichau

      Article first published online: 27 MAR 2015 | DOI: 10.1111/1462-2920.12813

    4. Virulence determinants of the human pathogenic fungus Aspergillus fumigatus protect against soil amoeba predation

      Falk Hillmann, Silvia Novohradská, Derek J. Mattern, Tilmann Forberger, Thorsten Heinekamp, Martin Westermann, Thomas Winckler and Axel A. Brakhage

      Article first published online: 27 MAR 2015 | DOI: 10.1111/1462-2920.12808

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      Metagenomic characterization of viral communities in corals: mining biological signal from methodological noise

      Elisha M. Wood-Charlson, Karen D. Weynberg, Curtis A. Suttle, Simon Roux and Madeleine J. H. van Oppen

      Article first published online: 27 MAR 2015 | DOI: 10.1111/1462-2920.12803

  3. Research Articles

    1. Generation of a CRISPR database for Yersinia pseudotuberculosis complex and role of CRISPR-based immunity in conjugation

      Katja A. Koskela, Laura Mattinen, Laura Kalin-Mänttäri, Gilles Vergnaud, Olivier Gorgé, Simo Nikkari and Mikael Skurnik

      Article first published online: 27 MAR 2015 | DOI: 10.1111/1462-2920.12816

    2. Heavy water and 15N labelling with NanoSIMS analysis reveals growth rate-dependent metabolic heterogeneity in chemostats

      Sebastian H. Kopf, Shawn E. McGlynn, Abigail Green-Saxena, Yunbin Guan, Dianne K. Newman and Victoria J. Orphan

      Article first published online: 27 MAR 2015 | DOI: 10.1111/1462-2920.12752

    3. Globally invading populations of the fungal plant pathogen Verticillium dahliae are dominated by multiple divergent lineages

      Dylan P. G. Short, Suraj Gurung, Pierre Gladieux, Patrik Inderbitzin, Zahi K. Atallah, Franco Nigro, Guoqing Li, Seher Benlioglu and Krishna V. Subbarao

      Article first published online: 25 MAR 2015 | DOI: 10.1111/1462-2920.12789

    4. A novel sister clade to the enterobacteria microviruses (family Microviridae) identified in methane seep sediments

      Samuel Joseph Bryson, Andrew R. Thurber, Adrienne M. S. Correa, Victoria J. Orphan and Rebecca Vega Thurber

      Article first published online: 25 MAR 2015 | DOI: 10.1111/1462-2920.12758

    5. Uranium phosphate biomineralization by fungi

      Xinjin Liang, Stephen Hillier, Helen Pendlowski, Nia Gray, Andrea Ceci and Geoffrey Michael Gadd

      Article first published online: 10 MAR 2015 | DOI: 10.1111/1462-2920.12771

    6. Microbial biogeography of drinking water: patterns in phylogenetic diversity across space and time

      Guus Roeselers, Jordy Coolen, Paul W. J. J. van der Wielen, Marco C. Jaspers, Adrie Atsma, Bendert de Graaf and Frank Schuren

      Article first published online: 10 MAR 2015 | DOI: 10.1111/1462-2920.12739

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  5. Research Articles

    1. You have full text access to this OnlineOpen article
      Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean

      Sebastian Sudek, R. Craig Everroad, Alyssa-Lois M. Gehman, Jason M. Smith, Camille L. Poirier, Francisco P. Chavez and Alexandra Z. Worden

      Article first published online: 6 MAR 2015 | DOI: 10.1111/1462-2920.12742

    2. Hydrogen sulfide can inhibit and enhance oxygenic photosynthesis in a cyanobacterium from sulfidic springs

      Judith M. Klatt, Sebastian Haas, Pelin Yilmaz, Dirk de Beer and Lubos Polerecky

      Article first published online: 4 MAR 2015 | DOI: 10.1111/1462-2920.12791

    3. Novel host-specific iron acquisition system in the zoonotic pathogen Vibrio vulnificus

      David Pajuelo, Chung-Te Lee, Francisco J. Roig, Lien-I. Hor and Carmen Amaro

      Article first published online: 4 MAR 2015 | DOI: 10.1111/1462-2920.12782

    4. Ecological and genetic interactions between cyanobacteria and viruses in a low-oxygen mat community inferred through metagenomics and metatranscriptomics

      Alexander A. Voorhies, Sarah D. Eisenlord, Daniel N. Marcus, Melissa B. Duhaime, Bopaiah A. Biddanda, James D. Cavalcoli and Gregory J. Dick

      Article first published online: 4 MAR 2015 | DOI: 10.1111/1462-2920.12756

    5. Methane-derived carbon flow through microbial communities in arctic lake sediments

      Ruo He, Matthew J. Wooller, John W. Pohlman, James M. Tiedje and Mary Beth Leigh

      Article first published online: 4 MAR 2015 | DOI: 10.1111/1462-2920.12773

    6. Hydrogen export from intertidal cyanobacterial mats: sources, fluxes and the influence of community composition

      Dörte Hoffmann, Juan Maldonado, Martin F. Wojciechowski and Ferran Garcia-Pichel

      Article first published online: 4 MAR 2015 | DOI: 10.1111/1462-2920.12769

    7. ‘Ménage à trois’: a selfish genetic element uses a virus to propagate within Thermotogales

      Julien Lossouarn, Camilla L. Nesbø, Coraline Mercier, Olga Zhaxybayeva, Milo S. Johnson, Rhianna Charchuck, Julien Farasin, Nadège Bienvenu, Anne-Claire Baudoux, Grégoire Michoud, Mohamed Jebbar and Claire Geslin

      Article first published online: 2 MAR 2015 | DOI: 10.1111/1462-2920.12783

    8. Fungicide efflux and the MgMFS1 transporter contribute to the multidrug resistance phenotype in Zymoseptoria tritici field isolates

      Selim Omrane, Hind Sghyer, Colette Audéon, Catherine Lanen, Clémentine Duplaix, Anne-Sophie Walker and Sabine Fillinger

      Article first published online: 2 MAR 2015 | DOI: 10.1111/1462-2920.12781

    9. Nitrogen-fixing bacteria associated with copepods in coastal waters of the North Atlantic Ocean

      Rosemary E. Scavotto, Claudia Dziallas, Mikkel Bentzon-Tilia, Lasse Riemann and Pia H. Moisander

      Article first published online: 2 MAR 2015 | DOI: 10.1111/1462-2920.12777

    10. The MADS-box transcription factor FgMcm1 regulates cell identity and fungal development in Fusarium graminearum

      Cui Yang, Huiquan Liu, Guotian Li, Meigang Liu, Yingzi Yun, Chenfang Wang, Zhonghua Ma and Jin-Rong Xu

      Article first published online: 2 MAR 2015 | DOI: 10.1111/1462-2920.12747

    11. Susceptibility of Vibrio aestuarianus 01/032 to the antibacterial activity of Mytilus haemolymph: identification of a serum opsonin involved in mannose-sensitive interactions

      Elisabetta Pezzati, Laura Canesi, Gianluca Damonte, Annalisa Salis, Francesco Marsano, Chiara Grande, Luigi Vezzulli and Carla Pruzzo

      Article first published online: 27 FEB 2015 | DOI: 10.1111/1462-2920.12750

    12. Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E

      Carlos Molina-Santiago, Abdelali Daddaoua, María Gómez-Lozano, Zulema Udaondo, Søren Molin and Juan-Luis Ramos

      Article first published online: 14 FEB 2015 | DOI: 10.1111/1462-2920.12775

    13. Leptospira and paramyxovirus infection dynamics in a bat maternity enlightens pathogen maintenance in wildlife

      Muriel Dietrich, David A. Wilkinson, Aude Benlali, Erwan Lagadec, Beza Ramasindrazana, Koussay Dellagi and Pablo Tortosa

      Article first published online: 14 FEB 2015 | DOI: 10.1111/1462-2920.12766

    14. Diversity and distribution of unicellular opisthokonts along the European coast analysed using high-throughput sequencing

      Javier del Campo, Diego Mallo, Ramon Massana, Colomban de Vargas, Thomas A. Richards and Iñaki Ruiz-Trillo

      Article first published online: 14 FEB 2015 | DOI: 10.1111/1462-2920.12759

    15. The MqsR/MqsA toxin/antitoxin system protects Escherichia coli during bile acid stress

      Brian W. Kwan, Dana M. Lord, Wolfgang Peti, Rebecca Page, Michael J. Benedik and Thomas K. Wood

      Article first published online: 14 FEB 2015 | DOI: 10.1111/1462-2920.12749

    16. Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum

      Sabrina Duranti, Christian Milani, Gabriele Andrea Lugli, Francesca Turroni, Leonardo Mancabelli, Borja Sanchez, Chiara Ferrario, Alice Viappiani, Marta Mangifesta, Walter Mancino, Miguel Gueimonde, Abelardo Margolles, Douwe van Sinderen and Marco Ventura

      Article first published online: 14 FEB 2015 | DOI: 10.1111/1462-2920.12743

    17. Depth shapes α- and β-diversities of microbial eukaryotes in surficial sediments of coastal ecosystems

      Jun Gong, Fei Shi, Bin Ma, Jun Dong, Maria Pachiadaki, Xiaoli Zhang and Virginia P. Edgcomb

      Article first published online: 11 FEB 2015 | DOI: 10.1111/1462-2920.12763

  6. Minireview

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      A holistic view of polyhydroxyalkanoate metabolism in Pseudomonas putida

      Auxiliadora Prieto, Isabel F. Escapa, Virginia Martínez, Nina Dinjaski, Cristina Herencias, Fernando de la Peña, Natalia Tarazona and Olga Revelles

      Article first published online: 11 FEB 2015 | DOI: 10.1111/1462-2920.12760

  7. Research Articles

    1. In situ DNA-hybridization chain reaction (HCR): a facilitated in situ HCR system for the detection of environmental microorganisms

      Tsuyoshi Yamaguchi, Shuji Kawakami, Masashi Hatamoto, Hiroyuki Imachi, Masanobu Takahashi, Nobuo Araki, Takashi Yamaguchi and Kengo Kubota

      Article first published online: 11 FEB 2015 | DOI: 10.1111/1462-2920.12745

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      Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina

      Yi-Wah Chan, Andrew D. Millard, Peter J. Wheatley, Antony B. Holmes, Remus Mohr, Anna L. Whitworth, Nicholas H. Mann, Anthony W. D. Larkum, Wolfgang R. Hess, David J. Scanlan and Martha R. J. Clokie

      Article first published online: 11 FEB 2015 | DOI: 10.1111/1462-2920.12735

    3. The archaeal lipidome in estuarine sediment dominated by members of the Miscellaneous Crenarchaeotal Group

      Travis B. Meador, Marshall Bowles, Cassandre S. Lazar, Chun Zhu, Andreas Teske and Kai-Uwe Hinrichs

      Article first published online: 11 FEB 2015 | DOI: 10.1111/1462-2920.12716

    4. Distribution of small phytoflagellates along an Arctic fjord transect

      Kasia Piwosz, Katarzyna Spich, Joanna Całkiewicz, Agata Weydmann, Anna M. Kubiszyn and Józef M. Wiktor

      Article first published online: 11 FEB 2015 | DOI: 10.1111/1462-2920.12705

    5. Response of intertidal benthic microalgal biofilms to a coupled light–temperature stress: evidence for latitudinal adaptation along the Atlantic coast of Southern Europe

      Martin Laviale, Alexandre Barnett, João Ezequiel, Bernard Lepetit, Silja Frankenbach, Vona Méléder, João Serôdio and Johann Lavaud

      Article first published online: 3 FEB 2015 | DOI: 10.1111/1462-2920.12728

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      Adaptation of anaerobic cultures of Escherichia coli K-12 in response to environmental trimethylamine-N-oxide

      Katie J. Denby, Matthew D. Rolfe, Ellen Crick, Guido Sanguinetti, Robert K. Poole and Jeffrey Green

      Article first published online: 3 FEB 2015 | DOI: 10.1111/1462-2920.12726

    7. Oxygen-dependent copper toxicity: targets in the chlorophyll biosynthesis pathway identified in the copper efflux ATPase CopA deficient mutant

      Sylviane Liotenberg, Anne-Soisig Steunou, Anne Durand, Marie-Line Bourbon, David Bollivar, Mats Hansson, Chantal Astier and Soufian Ouchane

      Article first published online: 3 FEB 2015 | DOI: 10.1111/1462-2920.12733

    8. Key respiratory genes elucidate bacterial community respiration in a seasonally anoxic estuary

      Erin M. Eggleston, Dong Y. Lee, Michael S. Owens, Jeffrey C. Cornwell, Byron C. Crump and Ian Hewson

      Article first published online: 3 FEB 2015 | DOI: 10.1111/1462-2920.12690

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      Changes in microbial communities in coastal sediments along natural CO2 gradients at a volcanic vent in Papua New Guinea

      Felix F. Raulf, Katharina Fabricius, Sven Uthicke, Dirk de Beer, Raeid M. M. Abed and Alban Ramette

      Article first published online: 3 FEB 2015 | DOI: 10.1111/1462-2920.12729

    10. Seasonal assemblages and short-lived blooms in coastal north-west Atlantic Ocean bacterioplankton

      Heba El-Swais, Katherine A. Dunn, Joseph P. Bielawski, William K. W. Li and David A. Walsh

      Article first published online: 30 JAN 2015 | DOI: 10.1111/1462-2920.12629

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      New tricks of an old enemy: isolates of Fusarium graminearum produce a type A trichothecene mycotoxin

      Elisabeth Varga, Gerlinde Wiesenberger, Christian Hametner, Todd J. Ward, Yanhong Dong, Denise Schöfbeck, Susan McCormick, Karen Broz, Romana Stückler, Rainer Schuhmacher, Rudolf Krska, H. Corby Kistler, Franz Berthiller and Gerhard Adam

      Article first published online: 30 JAN 2015 | DOI: 10.1111/1462-2920.12718

    12. Environmental rather than spatial factors structure bacterioplankton communities in shallow lakes along a > 6000 km latitudinal gradient in South America

      Caroline Souffreau, Katleen Van der Gucht, Ineke van Gremberghe, Sarian Kosten, Gissell Lacerot, Lúcia Meirelles Lobão, Vera Lúcia de Moraes Huszar, Fabio Roland, Erik Jeppesen, Wim Vyverman and Luc De Meester

      Article first published online: 30 JAN 2015 | DOI: 10.1111/1462-2920.12692

    13. The effects of variable sample biomass on comparative metagenomics

      Meghan Chafee, Loïs Maignien and Sheri L. Simmons

      Article first published online: 30 JAN 2015 | DOI: 10.1111/1462-2920.12668

    14. A single regulatory gene is sufficient to alter Vibrio aestuarianus pathogenicity in oysters

      David Goudenège, Marie Agnès Travers, Astrid Lemire, Bruno Petton, Philippe Haffner, Yannick Labreuche, Delphine Tourbiez, Sophie Mangenot, Alexandra Calteau, Didier Mazel, Jean Louis Nicolas, Annick Jacq and Frédérique Le roux

      Article first published online: 27 JAN 2015 | DOI: 10.1111/1462-2920.12699

    15. Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling

      Markus V. Lindh, Johanna Sjöstedt, Anders F. Andersson, Federico Baltar, Luisa W. Hugerth, Daniel Lundin, Saraladevi Muthusamy, Catherine Legrand and Jarone Pinhassi

      Article first published online: 27 JAN 2015 | DOI: 10.1111/1462-2920.12720

    16. Characterization of protein kinase PsSRPKL, a novel pathogenicity factor in the wheat stripe rust fungus

      Yulin Cheng, Xiaojie Wang, Juanni Yao, Ralf T. Voegele, Yanru Zhang, Wumei Wang, Lili Huang and Zhensheng Kang

      Article first published online: 27 JAN 2015 | DOI: 10.1111/1462-2920.12719

    17. Alteration of cyanobacterial sugar and amino acid metabolism by overexpression hik8, encoding a KaiC-associated histidine kinase

      Takashi Osanai, Tomokazu Shirai, Hiroko Iijima, Ayuko Kuwahara, Iwane Suzuki, Akihiko Kondo and Masami Yokota Hirai

      Article first published online: 27 JAN 2015 | DOI: 10.1111/1462-2920.12715

    18. Thermally adaptive tradeoffs in closely related marine bacterial strains

      Cheuk-Man Yung, Marissa K. Vereen, Amy Herbert, Katherine M. Davis, Jiayu Yang, Agata Kantorowska, Christopher S. Ward, Jennifer J. Wernegreen, Zackary I. Johnson and Dana E. Hunt

      Article first published online: 27 JAN 2015 | DOI: 10.1111/1462-2920.12714

    19. A small molecule species specifically inhibits Fusarium myosin I

      Chengqi Zhang, Yun Chen, Yanni Yin, Huan-Hong Ji, Won-Bo Shim, Yiping Hou, Mingguo Zhou, Xiang-dong Li and Zhonghua Ma

      Article first published online: 27 JAN 2015 | DOI: 10.1111/1462-2920.12711

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  9. Research Articles

    1. Functional adaptations of the bacterial chaperone trigger factor to extreme environmental temperatures

      Amandine Godin-Roulling, Philipp A. M. Schmidpeter, Franz X. Schmid and Georges Feller

      Article first published online: 27 JAN 2015 | DOI: 10.1111/1462-2920.12707

    2. The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger

      Willm Martens-Habbena, Wei Qin, Rachel E. A. Horak, Hidetoshi Urakawa, Andrew J. Schauer, James W. Moffett, E. Virginia Armbrust, Anitra E. Ingalls, Allan H. Devol and David A. Stahl

      Article first published online: 27 JAN 2015 | DOI: 10.1111/1462-2920.12677

    3. Identification of proteins capable of metal reduction from the proteome of the Gram-positive bacterium Desulfotomaculum reducens MI-1 using an NADH-based activity assay

      Anne Elyse Otwell, Robert W. Sherwood, Sheng Zhang, Ornella D. Nelson, Zhi Li, Hening Lin, Stephen J. Callister and Ruth E. Richardson

      Article first published online: 27 JAN 2015 | DOI: 10.1111/1462-2920.12673

    4. Loss of Dfg5 glycosylphosphatidylinositol-anchored membrane protein confers enhanced heat tolerance in Saccharomyces cerevisiae

      Olviyani Nasution, Jaok Lee, Kavitha Srinivasa, In-Geol Choi, Young Mi Lee, Eunjung Kim, Wonja Choi and Wankee Kim

      Article first published online: 7 JAN 2015 | DOI: 10.1111/1462-2920.12649

    5. Unveiling equal importance of two 14-3-3 proteins for morphogenesis, conidiation, stress tolerance and virulence of an insect pathogen

      Qian Liu, Jin-Gen Li, Sheng-Hua Ying, Juan-Juan Wang, Wen-Liang Sun, Chao-Guang Tian and Ming-Guang Feng

      Article first published online: 7 JAN 2015 | DOI: 10.1111/1462-2920.12634

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  11. Research Articles

    1. The effect of anthropogenic arsenic contamination on the earthworm microbiome

      Daniel Antony Pass, Andrew John Morgan, Daniel S. Read, Dawn Field, Andrew J. Weightman and Peter Kille

      Article first published online: 17 DEC 2014 | DOI: 10.1111/1462-2920.12712

    2. Abiotic stress protection by ecologically abundant dimethylsulfoniopropionate and its natural and synthetic derivatives: insights from Bacillus subtilis

      Sebastian Broy, Chiliang Chen, Tamara Hoffmann, Nelson L. Brock, Gabriele Nau-Wagner, Mohamed Jebbar, Sander H. J. Smits, Jeroen S. Dickschat and Erhard Bremer

      Article first published online: 17 DEC 2014 | DOI: 10.1111/1462-2920.12698

    3. XbmR, a new transcription factor involved in the regulation of chemotaxis, biofilm formation and virulence in Xanthomonas citri subsp. citri

      Pablo M. Yaryura, Valeria P. Conforte, Florencia Malamud, Roxana Roeschlin, Verónica de Pino, Atilio P. Castagnaro, Yvonne McCarthy, J. Maxwell Dow, María R. Marano and Adrián A. Vojnov

      Article first published online: 17 DEC 2014 | DOI: 10.1111/1462-2920.12684

    4. Physiological characterization of anaerobic ammonium oxidizing bacterium ‘Candidatus Jettenia caeni’

      Muhammad Ali, Mamoru Oshiki, Takanori Awata, Kazuo Isobe, Zenichiro Kimura, Hiroaki Yoshikawa, Daisuke Hira, Tomonori Kindaichi, Hisashi Satoh, Takao Fujii and Satoshi Okabe

      Article first published online: 17 DEC 2014 | DOI: 10.1111/1462-2920.12674

    5. Diversity and dynamics of bacteriocins from human microbiome

      Jinshui Zheng, Michael G. Gänzle, Xiaoxi B. Lin, Lifang Ruan and Ming Sun

      Article first published online: 17 DEC 2014 | DOI: 10.1111/1462-2920.12662

    6. Potential for biogeochemical cycling of sulfur, iron and carbon within massive sulfide deposits below the seafloor

      Shingo Kato, Kei Ikehata, Takazo Shibuya, Tetsuro Urabe, Moriya Ohkuma and Akihiko Yamagishi

      Article first published online: 17 DEC 2014 | DOI: 10.1111/1462-2920.12648

    7. Dual analysis of host and pathogen transcriptomes in ostreid herpesvirus 1-positive Crassostrea gigas

      U. Rosani, L. Varotto, S. Domeneghetti, G. Arcangeli, A. Pallavicini and P. Venier

      Article first published online: 17 DEC 2014 | DOI: 10.1111/1462-2920.12706

    8. Spatial structuring of bacterial communities within individual Ginkgo biloba trees

      Jonathan W. Leff, Peter Del Tredici, William E. Friedman and Noah Fierer

      Article first published online: 17 DEC 2014 | DOI: 10.1111/1462-2920.12695

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