Environmental Microbiology

Cover image for Vol. 19 Issue 2

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Kenneth N. Timmis, Martin Polz, Paola Bonfante, Rachel Whitaker, Thomas K.Wood, Jay Lennon, David Berry, Frank Stewart, Julie Huber, Alyson Santoro, Nicole Webster, Juan L. Ramos, and Michael Galperin.

Impact Factor: 5.932

ISI Journal Citation Reports © Ranking: 2015: 16/123 (Microbiology)

Online ISSN: 1462-2920

Associated Title(s): Environmental Microbiology Reports

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  1. 1 - 58
  1. EMI - Research article

    1. Ecotype diversification of an abundant Roseobacter lineage

      Ying Sun, Yao Zhang, James T. Hollibaugh and Haiwei Luo

      Version of Record online: 24 FEB 2017 | DOI: 10.1111/1462-2920.13683

    2. Population and evolutionary dynamics of Shiga-toxin producing Escherichia coli O157 in a beef herd: A longitudinal study

      Meghan Jones, Sophie Octavia, Geraldine Lammers, Jane Heller and Ruiting Lan

      Version of Record online: 22 FEB 2017 | DOI: 10.1111/1462-2920.13679

    3. Melanin is effective in protecting fast and slow growing fungi from various types of ionizing radiation

      Claudia Pacelli, Ruth A. Bryan, Silvano Onofri, Laura Selbmann, Igor Shuryak and Ekaterina Dadachova

      Version of Record online: 22 FEB 2017 | DOI: 10.1111/1462-2920.13681

    4. You have full text access to this OnlineOpen article
      Oxygenic and anoxygenic photosynthesis in a microbial mat from an anoxic and sulfidic spring

      Dirk de Beer, Miriam Weber, Arjun Chennu, Trinity Hamilton, Christian Lott, Jennifer Macalady and Judith M. Klatt

      Version of Record online: 20 FEB 2017 | DOI: 10.1111/1462-2920.13654

  2. EMI - Highlight

    1. Hand over that gun: lateral gene transfer provides an amoeba with a bacterial weapon

      Manuel A. G. Vera and Andreas Brune

      Version of Record online: 16 FEB 2017 | DOI: 10.1111/1462-2920.13680

  3. EMI - Research article

    1. Cyanobacterial harmful algal blooms are a biological disturbance to Western Lake Erie bacterial communities

      Michelle A. Berry, Timothy W. Davis, Rose M. Cory, Melissa B. Duhaime, Thomas H. Johengen, George W. Kling, John A. Marino, Paul A. Den Uyl, Duane Gossiaux, Gregory J. Dick and Vincent J. Denef

      Version of Record online: 16 FEB 2017 | DOI: 10.1111/1462-2920.13640

    2. Evaluating the core microbiota in complex communities: A systematic investigation

      Carmen Astudillo-García, James J. Bell, Nicole S. Webster, Bettina Glasl, Jamaluddin Jompa, Jose M. Montoya and Michael W. Taylor

      Version of Record online: 10 FEB 2017 | DOI: 10.1111/1462-2920.13647

    3. Root isoflavonoids and hairy root transformation influence key bacterial taxa in the soybean rhizosphere

      Laura J. White, Xijin Ge, Volker S. Brözel and Senthil Subramanian

      Version of Record online: 10 FEB 2017 | DOI: 10.1111/1462-2920.13602

    4. A NodD-like protein activates transcription of genes involved with naringenin degradation in a flavonoid-dependent manner in Herbaspirillum seropedicae

      R. Wassem, A. M. Marin, A. Daddaoua, R. A. Monteiro, L. S. Chubatsu, J.L. Ramos, W. J. Deakin, W. J. Broughton, F. O. Pedrosa and E. M. Souza

      Version of Record online: 10 FEB 2017 | DOI: 10.1111/1462-2920.13604

    5. PSTha5a23, a candidate effector from the obligate biotrophic pathogen Puccinia striiformis f. sp. tritici, is involved in plant defense suppression and rust pathogenicity

      Yulin Cheng, Kuan Wu, Juanni Yao, Shumin Li, Xiaojie Wang, Lili Huang and Zhensheng Kang

      Version of Record online: 10 FEB 2017 | DOI: 10.1111/1462-2920.13610

    6. Permeability shapes bacterial communities in sublittoral surface sediments

      D. Probandt, K. Knittel, H. E. Tegetmeyer, S. Ahmerkamp, M. Holtappels and R. Amann

      Version of Record online: 7 FEB 2017 | DOI: 10.1111/1462-2920.13676

    7. Ultrastructure of ellipsoidal magnetotactic multicellular prokaryotes depicts their complex assemblage and cellular polarity in the context of magnetotaxis

      Pedro Leão, Yi-Ran Chen, Fernanda Abreu, Mingling Wang, Wei-Jia Zhang, Ke Zhou, Tian Xiao, Long-Fei Wu and Ulysses Lins

      Version of Record online: 7 FEB 2017 | DOI: 10.1111/1462-2920.13677

    8. Two degradation strategies for overcoming the recalcitrance of natural lignocellulosic xylan by polysaccharides-binding GH10 and GH11 xylanases of filamentous fungi

      Youzhi Miao, Pan Li, Guangqi Li, Dongyang Liu, Irina S. Druzhinina, Christian P. Kubicek, Qirong Shen and Ruifu Zhang

      Version of Record online: 6 FEB 2017 | DOI: 10.1111/1462-2920.13614

    9. Uptake-release dynamics of the inorganic and organic carbon pool mediated by planktonic prokaryotes in the deep Mediterranean Sea

      Mauro Celussi, Francesca Malfatti, Patrizia Ziveri, Michele Giani and Paola Del Negro

      Version of Record online: 6 FEB 2017 | DOI: 10.1111/1462-2920.13641

    10. The expression of Longus type 4 pilus of enterotoxigenic Escherichia coli is regulated by LngR and LngS and by H-NS, CpxR and CRP global regulators

      Miguel A. De la Cruz, Alejandro Ruiz-Tagle, Miguel A. Ares, Sabino Pacheco, Jorge A. Yáñez, Lilia Cedillo, Javier Torres and Jorge A. Girón

      Version of Record online: 6 FEB 2017 | DOI: 10.1111/1462-2920.13644

    11. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach

      Tanja Shabarova, Vojtěch Kasalický, Karel Šimek, Jiří Nedoma, Petr Znachor, Thomas Posch, Jakob Pernthaler and Michaela M. Salcher

      Version of Record online: 6 FEB 2017 | DOI: 10.1111/1462-2920.13663

    12. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation

      Jeanne Doré, Annegret Kohler, Audrey Dubost, Hope Hundley, Vasanth Singan, Yi Peng, Alan Kuo, Igor V. Grigoriev, Francis Martin, Roland Marmeisse and Gilles Gay

      Version of Record online: 6 FEB 2017 | DOI: 10.1111/1462-2920.13670

    13. In-situ incubation of iron-sulfur mineral reveals a diverse chemolithoautotrophic community and a new biogeochemical role for Thiomicrospira

      Roman A. Barco, Colleen L. Hoffman, Gustavo A. Ramírez, Brandy M. Toner, Katrina J. Edwards and Jason B. Sylvan

      Version of Record online: 6 FEB 2017 | DOI: 10.1111/1462-2920.13666

    14. Production of the antibiotic secondary metabolite solanapyrone A by the fungal plant pathogen Ascochyta rabiei during fruiting body formation in saprobic growth

      Wonyong Kim, Jeong-Jin Park, Frank M. Dugan, Tobin L. Peever, David R. Gang, George Vandemark and Weidong Chen

      Version of Record online: 6 FEB 2017 | DOI: 10.1111/1462-2920.13673

    15. You have full text access to this OnlineOpen article
      Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers

      Markus V. Lindh, Johanna Sjöstedt, Börje Ekstam, Michele Casini, Daniel Lundin, Luisa W. Hugerth, Yue O. O. Hu, Anders F. Andersson, Agneta Andersson, Catherine Legrand and Jarone Pinhassi

      Version of Record online: 6 FEB 2017 | DOI: 10.1111/1462-2920.13650

    16. Phenotypic plasticity in freshwater picocyanobacteria

      Paula Huber, Nadia Diovisalvi, Marcela Ferraro, Sebastián Metz, Leonardo Lagomarsino, María Eugenia Llames, Marta Royo-Llonch, José Bustingorry, Roberto Escaray, Silvia G. Acinas, Josep M. Gasol and Fernando Unrein

      Version of Record online: 3 FEB 2017 | DOI: 10.1111/1462-2920.13638

    17. Indole-associated predator–prey interactions between the nematode Caenorhabditis elegans and bacteria

      Jin-Hyung Lee, Yong-Guy Kim, Minsu Kim, Eonmi Kim, Hyukjae Choi, Younghoon Kim and Jintae Lee

      Version of Record online: 3 FEB 2017 | DOI: 10.1111/1462-2920.13649

    18. Genomic and physiological analyses of ‘Reinekea forsetii’ reveal a versatile opportunistic lifestyle during spring algae blooms

      Burak Avcı, Richard L. Hahnke, Meghan Chafee, Tanja Fischer, Harald Gruber-Vodicka, Halina E. Tegetmeyer, Jens Harder, Bernhard M. Fuchs, Rudolf I. Amann and Hanno Teeling

      Version of Record online: 3 FEB 2017 | DOI: 10.1111/1462-2920.13646

  4. EMI - Minireview

    1. You have full text access to this OnlineOpen article
      Microbial nutrient niches in the gut

      Fátima C. Pereira and David Berry

      Version of Record online: 3 FEB 2017 | DOI: 10.1111/1462-2920.13659

  5. EMI - Research article

    1. It is elemental: soil nutrient stoichiometry drives bacterial diversity

      Manuel Delgado-Baquerizo, Peter B. Reich, Amit N. Khachane, Colin D. Campbell, Nadine Thomas, Thomas E. Freitag, Waleed Abu Al-Soud, Søren Sørensen, Richard D. Bardgett and Brajesh K. Singh

      Version of Record online: 3 FEB 2017 | DOI: 10.1111/1462-2920.13642

  6. Genomics Update

    1. Oscillospira and related bacteria – From metagenomic species to metabolic features

      Uri Gophna, Tom Konikoff and Henrik Bjørn Nielsen

      Version of Record online: 3 FEB 2017 | DOI: 10.1111/1462-2920.13658

  7. EMI - Research article

    1. Biogeochemical spatio-temporal transformation of copper in Aspergillus niger colonies grown on malachite with different inorganic nitrogen sources

      Marina Fomina, Andrew D. Bowen, John M. Charnock, Valentin S. Podgorsky and Geoffrey M. Gadd

      Version of Record online: 1 FEB 2017 | DOI: 10.1111/1462-2920.13664

    2. Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity

      Sara Coyotzi, Andrew C. Doxey, Ian D. Clark, David R. Lapen, Philippe Van Cappellen and Josh D. Neufeld

      Version of Record online: 1 FEB 2017 | DOI: 10.1111/1462-2920.13643

    3. The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria

      Boyang Ji, Sheng-Da Zhang, Wei-Jia Zhang, Zoe Rouy, François Alberto, Claire-Lise Santini, Sophie Mangenot, Séverine Gagnot, Nadège Philippe, Nathalie Pradel, Lichen Zhang, Sébastien Tempel, Ying Li, Claudine Médigue, Bernard Henrissat, Pedro M. Coutinho, Valérie Barbe, Emmanuel Talla and Long-Fei Wu

      Version of Record online: 1 FEB 2017 | DOI: 10.1111/1462-2920.13637

    4. Soil microbial communities are shaped by vegetation type and park age in cities under cold climate

      Nan Hui, Ari Jumpponen, Gaia Francini, D. Johan Kotze, Xinxin Liu, Martin Romantschuk, Rauni Strömmer and Heikki Setälä

      Version of Record online: 1 FEB 2017 | DOI: 10.1111/1462-2920.13660

    5. Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens

      J. Uehling, A. Gryganskyi, K. Hameed, T. Tschaplinski, P. K. Misztal, S. Wu, A. Desirò, N. Vande Pol, Z. Du, A. Zienkiewicz, K. Zienkiewicz, E. Morin, E. Tisserant, R. Splivallo, M. Hainaut, B. Henrissat, R. Ohm, A. Kuo, J. Yan, A. Lipzen, M. Nolan, K. LaButti, K. Barry, A. H. Goldstein, J. Labbé, C. Schadt, G. Tuskan, I. Grigoriev, F. Martin, R. Vilgalys and G. Bonito

      Version of Record online: 1 FEB 2017 | DOI: 10.1111/1462-2920.13669

    6. Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system

      Zhou Li, Qiuming Yao, Stephen P. Dearth, Matthew R. Entler, Hector F. Castro Gonzalez, Jessie K. Uehling, Rytas J. Vilgalys, Gregory B. Hurst, Shawn R. Campagna, Jessy L. Labbé and Chongle Pan

      Version of Record online: 30 JAN 2017 | DOI: 10.1111/1462-2920.13605

  8. EMI - Minireview

    1. You have full text access to this OnlineOpen article
      Glycerol metabolism and transport in yeast and fungi: established knowledge and ambiguities

      Mathias Klein, Steve Swinnen, Johan M. Thevelein and Elke Nevoigt

      Version of Record online: 30 JAN 2017 | DOI: 10.1111/1462-2920.13617

  9. EMI - Research article

    1. Composition and diversity of mucosa-associated microbiota along the entire length of the pig gastrointestinal tract; dietary influences

      Jennifer Kelly, Kristian Daly, Andrew W. Moran, Sheila Ryan, David Bravo and Soraya P. Shirazi-Beechey

      Version of Record online: 27 JAN 2017 | DOI: 10.1111/1462-2920.13619

    2. Mycobacterium ulcerans toxin, mycolactone may enhance host-seeking and oviposition behaviour by Aedes aegypti (L.) (Diptera: Culicidae)

      M. L. Sanders, H. R. Jordan, C. Serewis-Pond, L. Zheng, M. E. Benbow, P. L. Small and J. K. Tomberlin

      Version of Record online: 25 JAN 2017 | DOI: 10.1111/1462-2920.13629

    3. Eye of the Finch: characterization of the ocular microbiome of house finches in relation to mycoplasmal conjunctivitis

      Courtney A. Thomason, Ariel Leon, Laila T. Kirkpatrick, Lisa K. Belden and Dana M. Hawley

      Version of Record online: 25 JAN 2017 | DOI: 10.1111/1462-2920.13625

    4. Lateral gene transfer of p-cresol- and indole-producing enzymes from environmental bacteria to Mastigamoeba balamuthi

      Eva Nývltová, Robert Šut'ák, Vojtěch Žárský, Karel Harant, Ivan Hrdý and Jan Tachezy

      Version of Record online: 25 JAN 2017 | DOI: 10.1111/1462-2920.13636

  10. EMI - Special Issue Article

    1. Glycerol stress in Saccharomyces cerevisiae: Cellular responses and evolved adaptations

      Florian Mattenberger, Beatriz Sabater-Muñoz, John E. Hallsworth and Mario A. Fares

      Version of Record online: 23 JAN 2017 | DOI: 10.1111/1462-2920.13603

  11. EMI - Minireview

    1. Plant–phytopathogen interactions: bacterial responses to environmental and plant stimuli

      Simon Leonard, Florence Hommais, William Nasser and Sylvie Reverchon

      Version of Record online: 23 JAN 2017 | DOI: 10.1111/1462-2920.13611

  12. EMI - Research article

    1. Biodegradation of the aminopolyphosphonate DTPMP by the cyanobacterium Anabaena variabilis proceeds via a C–P lyase-independent pathway

      Damian Drzyzga, Giuseppe Forlani, Jochen Vermander, Paweł Kafarski and Jacek Lipok

      Version of Record online: 23 JAN 2017 | DOI: 10.1111/1462-2920.13616

    2. Shared and host-specific microbiome diversity and functioning of grapevine and accompanying weed plants

      Abdul Samad, Friederike Trognitz, Stéphane Compant, Livio Antonielli and Angela Sessitsch

      Version of Record online: 23 JAN 2017 | DOI: 10.1111/1462-2920.13618

    3. The septin protein Sep4 facilitates host infection by plant fungal pathogens via mediating initiation of infection structure formation

      Hui-Qiang Feng, Gui-Hua Li, Shun-Wen Du, Song Yang, Xue-Qian Li, Paul de Figueiredo and Qing-Ming Qin

      Version of Record online: 23 JAN 2017 | DOI: 10.1111/1462-2920.13613

    4. The molecular response of the white-rot fungus Dichomitus squalens to wood and non-woody biomass as examined by transcriptome and exoproteome analyses

      Johanna Rytioja, Kristiina Hildén, Marcos Di Falco, Miaomiao Zhou, Maria Victoria Aguilar-Pontes, Outi-Maaria Sietiö, Adrian Tsang, Ronald P. de Vries and Miia R. Mäkelä

      Version of Record online: 23 JAN 2017 | DOI: 10.1111/1462-2920.13652

    5. Laribacter hongkongensis anaerobic adaptation mediated by arginine metabolism is controlled by the cooperation of FNR and ArgR

      Lifeng Xiong, Ying Yang, Yuan-Nong Ye, Jade L. L. Teng, Elaine Chan, Rory M. Watt, Feng-Biao Guo, Susanna K. P. Lau and Patrick C. Y. Woo

      Version of Record online: 22 JAN 2017 | DOI: 10.1111/1462-2920.13657

    6. The microtubule end-binding protein FgEB1 regulates polar growth and fungicide sensitivity via different interactors in Fusarium graminearum

      Zunyong Liu, Sisi Wu, Yun Chen, Xinyue Han, Qin Gu, Yanni Yin and Zhonghua Ma

      Version of Record online: 18 JAN 2017 | DOI: 10.1111/1462-2920.13651

    7. You have full text access to this OnlineOpen article
      Characterization of the first cultured representative of a Bacteroidetes clade specialized on the scavenging of cyanobacteria

      Wajdi Ben Hania, Manon Joseph, Boyke Bunk, Cathrin Spröer, Hans-Peter Klenk, Marie-Laure Fardeau and Stefan Spring

      Version of Record online: 13 JAN 2017 | DOI: 10.1111/1462-2920.13639

  13. EMI - Minireview

    1. You have free access to this content
      Glycerol metabolism of haloarchaea

      Timothy J. Williams, Michelle Allen, Bernhard Tschitschko and Ricardo Cavicchioli

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13580

  14. EMI - Special Issue Article

    1. You have full text access to this OnlineOpen article
      Glycerol enhances fungal germination at the water-activity limit for life

      Andrew Stevenson, Philip G. Hamill, Ángel Medina, Gerhard Kminek, John D. Rummel, Jan Dijksterhuis, David J. Timson, Naresh Magan, Su-Lin L. Leong and John E. Hallsworth

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13530

  15. EMI - Research article

    1. Water mass mixing shapes bacterial biogeography in a highly hydrodynamic region of the Southern Ocean

      Víctor Hernando-Morales, Julia Ameneiro and Eva Teira

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/1462-2920.13538

    2. Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

      Siavash Atashgahi, Yue Lu, Ying Zheng, Edoardo Saccenti, Maria Suarez-Diez, Javier Ramiro-Garcia, Heinrich Eisenmann, Martin Elsner, Alfons J.M. Stams, Dirk Springael, Winnie Dejonghe and Hauke Smidt

      Version of Record online: 6 OCT 2016 | DOI: 10.1111/1462-2920.13531

  16. EMI - Minireview

    1. You have free access to this content
      Glycerol metabolism in hypersaline environments

      Aharon Oren

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13493

  17. EMI - Research article

    1. Feeding on compatible solutes: A substrate-induced pathway for uptake and catabolism of ectoines and its genetic control by EnuR

      Annina Schulz, Nadine Stöveken, Ina M. Binzen, Tamara Hoffmann, Johann Heider and Erhard Bremer

      Version of Record online: 18 AUG 2016 | DOI: 10.1111/1462-2920.13414

    2. You have full text access to this OnlineOpen article
      Oxidation of urea-derived nitrogen by thaumarchaeota-dominated marine nitrifying communities

      Bradley B. Tolar, Natalie J. Wallsgrove, Brian N. Popp and James T. Hollibaugh

      Version of Record online: 11 AUG 2016 | DOI: 10.1111/1462-2920.13457

    3. Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms

      Adrien Bussard, Erwan Corre, Cédric Hubas, Evelyne Duvernois-Berthet, Gildas Le Corguillé, Laurent Jourdren, Fanny Coulpier, Pascal Claquin and Pascal Jean Lopez

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13398

    4. You have full text access to this OnlineOpen article
      Dealing with salinity extremes and nitrogen limitation – an unexpected strategy of the marine bacterium Dinoroseobacter shibae

      Sarah Kleist, Marcus Ulbrich, Nelli Bill, Kerstin Schmidt-Hohagen, Robert Geffers and Dietmar Schomburg

      Version of Record online: 15 JUN 2016 | DOI: 10.1111/1462-2920.13266

  18. EMI - Research Articles

    1. You have full text access to this OnlineOpen article
      Archaea produce lower yields of N2O than bacteria during aerobic ammonia oxidation in soil

      Linda Hink, Graeme W. Nicol and James I. Prosser

      Version of Record online: 28 APR 2016 | DOI: 10.1111/1462-2920.13282

  19. EMI - Research article

    1. Modularity of nitrogen-oxide reducing soil bacteria: linking phenotype to genotype

      Constance A. Roco, Linda L. Bergaust, Lars R. Bakken, Joseph B. Yavitt and James P. Shapleigh

      Version of Record online: 21 MAR 2016 | DOI: 10.1111/1462-2920.13250

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