Environmental Microbiology

Cover image for Vol. 18 Issue 11

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Kenneth N. Timmis, Martin Polz, Paola Bonfante, Rachel Whitaker, Thomas K.Wood, Jay Lennon, David Berry, Frank Stewart, Julie Huber, Juan L. Ramos and Alyson Santoro. Genomics Update Editor: Michael Galperin

Impact Factor: 5.932

ISI Journal Citation Reports © Ranking: 2015: 16/123 (Microbiology)

Online ISSN: 1462-2920

Associated Title(s): Environmental Microbiology Reports

VIEW

  1. 1 - 100
  2. 101 - 121
  1. EMI - Research article

    1. Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene

      Carlos Molina-Santiago, Zulema Udaondo, María Gómez-Lozano, Soren Molin and Juan-Luis Ramos

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13585

    2. The extracellular matrix of the oleolytic biofilms of Marinobacter hydrocarbonoclasticus comprises cytoplasmic proteins and T2SS effectors that promote growth on hydrocarbons and lipids

      Habiba Ennouri, Paul d'Abzac, Florence Hakil, Priscilla Branchu, Murielle Naïtali, Anne-Marie Lomenech, Ridha Oueslati, Jacques Desbrières, Pierre Sivadon and Régis Grimaud

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13547

    3. Microbial processes of the carbon and sulfur cycles in an ice-covered, iron-rich meromictic lake Svetloe (Arkhangelsk region, Russia)

      Alexander S. Savvichev, Natalia M. Kokryatskaya, Svetlana A. Zabelina, Igor I. Rusanov, Elena E. Zakharova, Elena F. Veslopolova, Olga N. Lunina, Ekaterina O. Patutina, Boris K. Bumazhkin, Denis S. Gruzdev, Pavel A. Sigalevich, Nikolay V. Pimenov, Boris B. Kuznetsov and Vladimir M. Gorlenko

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13591

  2. EMI - Minireview

    1. You have free access to this content
      Formation of propionate and butyrate by the human colonic microbiota

      Petra Louis and Harry J. Flint

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13589

  3. EMI - Research article

    1. Phylogeography and pigment type diversity of Synechococcus cyanobacteria in surface waters of the northwestern pacific ocean

      Xiaomin Xia, Frédéric Partensky, Laurence Garczarek, Koji Suzuki, Cui Guo, Shun Yan Cheung and Hongbin Liu

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13541

    2. Intensive cryptic microbial iron cycling in the low iron water column of the meromictic Lake Cadagno

      Jasmine S. Berg, Dolma Michellod, Petra Pjevac, Clara Martinez-Perez, Caroline R. T. Buckner, Philipp F. Hach, Carsten J. Schubert, Jana Milucka and Marcel M. M. Kuypers

      Version of Record online: 14 NOV 2016 | DOI: 10.1111/1462-2920.13587

    3. You have full text access to this OnlineOpen article
      Cell-specific nitrogen- and carbon-fixation of cyanobacteria in a temperate marine system (Baltic Sea)

      I. Klawonn, N. Nahar, J. Walve, B. Andersson, M. Olofsson, J. B. Svedén, S. Littmann, M. J. Whitehouse, M. M. M. Kuypers and H Ploug

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13557

    4. Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT

      Tristan Barbeyron, François Thomas, Valérie Barbe, Hanno Teeling, Chantal Schenowitz, Carole Dossat, Alexander Goesmann, Catherine Leblanc, Frank Oliver Glöckner, Mirjam Czjzek, Rudolf Amann and Gurvan Michel

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13584

  4. EMI - Minireview

    1. You have free access to this content
      Glycerol metabolism of haloarchaea

      Timothy J. Williams, Michelle Allen, Bernhard Tschitschko and Ricardo Cavicchioli

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13580

  5. EMI - Research article

    1. Oral application of Escherichia coli bacteriophage: safety tests in healthy and diarrheal children from Bangladesh

      Shafiqul Alam Sarker, Bernard Berger, Ying Deng, Silas Kieser, Francis Foata, Deborah Moine, Patrick Descombes, Shamima Sultana, Sayeeda Huq, Pradip Kumar Bardhan, Valérie Vuillet, Fabienne Praplan and Harald Brüssow

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13574

  6. EMI - Special Issue Article

    1. You have full text access to this OnlineOpen article
      Glycerol enhances fungal germination at the water-activity limit for life

      Andrew Stevenson, Philip G. Hamill, Ángel Medina, Gerhard Kminek, John D. Rummel, Jan Dijksterhuis, David J. Timson, Naresh Magan, Su-Lin L. Leong and John E. Hallsworth

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13530

  7. EMI - Research article

    1. Global expression analysis of the response to microaerobiosis reveals an important cue for endophytic establishment of Azoarcus sp. BH72

      Abhijit Sarkar, Marta Marszalkowska, Martin Schäfer, Tobias Pees, Hannah Klingenberg, Franziska Macht and Barbara Reinhold-Hurek

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13569

    2. Growth phase-dependent control of R27 conjugation is mediated by the interplay between the plasmid-encoded regulatory circuit TrhR/TrhY-HtdA and the cAMP regulon

      Marta Gibert, Sonia Paytubi, Sergi Beltrán, Antonio Juárez, Carlos Balsalobre and Cristina Madrid

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13579

    3. Microbial eukaryote communities exhibit robust biogeographical patterns along a gradient of Patagonian and Antarctic lakes

      M. Romina Schiaffino, Enrique Lara, Leonardo D. Fernández, Vanessa Balagué, David Singer, Christophe C. W. Seppey, Ramon Massana and Irina Izaguirre

      Version of Record online: 28 OCT 2016 | DOI: 10.1111/1462-2920.13566

    4. Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome

      Lizi Bensoussan, Sarah Moraïs, Bareket Dassa, Nir Friedman, Bernard Henrissat, Vincent Lombard, Edward A. Bayer and Itzhak Mizrahi

      Version of Record online: 28 OCT 2016 | DOI: 10.1111/1462-2920.13561

    5. Temperature moderates the infectiousness of two conspecific Symbiodinium strains isolated from the same host population

      Thomas D. Hawkins, Julia. C. G. Hagemeyer and Mark E. Warner

      Version of Record online: 28 OCT 2016 | DOI: 10.1111/1462-2920.13535

    6. Functional analysis of Escherichia coli Yad fimbriae reveals their potential role in environmental persistence

      Fanny Larsonneur, Fernando A. Martin, Adeline Mallet, Marta Martinez-Gil, Vincent Semetey, Jean-Marc Ghigo and Christophe Beloin

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/1462-2920.13559

  8. EMI - Opinion

    1. Replicate and randomize, or lie

      R. Webster

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/1462-2920.13533

  9. EMI - Research article

    1. Acidification and warming affect prominent bacteria in two seasonal phytoplankton bloom mesocosms

      Benjamin Bergen, Sonja Endres, Anja Engel, Maren Zark, Thorsten Dittmar, Ulrich Sommer and Klaus Jürgens

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/1462-2920.13549

  10. EMI - Highlight

  11. EMI - Research article

    1. Water mass mixing shapes bacterial biogeography in a highly hydrodynamic region of the Southern Ocean

      Víctor Hernando-Morales, Julia Ameneiro and Eva Teira

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/1462-2920.13538

    2. Bacterial microbiota associated with flower pollen is influenced by pollination type, and shows a high degree of diversity and species-specificity

      Binoy Ambika Manirajan, Stefan Ratering, Volker Rusch, Andreas Schwiertz, Rita Geissler-Plaum, Massimiliano Cardinale and Sylvia Schnell

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/1462-2920.13524

    3. Bacteria induce pigment formation in the basidiomycete Serpula lacrymans

      James P. Tauber, Volker Schroeckh, Ekaterina Shelest, Axel A. Brakhage and Dirk Hoffmeister

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/1462-2920.13558

    4. A monotonically declining elevational pattern of bacterial diversity in freshwater lake sediments

      Jin Zeng, Dayong Zhao, Huabing Li, Rui Huang, Jianjun Wang and Qinglong L. Wu

      Version of Record online: 13 OCT 2016 | DOI: 10.1111/1462-2920.13526

    5. Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

      Siavash Atashgahi, Yue Lu, Ying Zheng, Edoardo Saccenti, Maria Suarez-Diez, Javier Ramiro-Garcia, Heinrich Eisenmann, Martin Elsner, Alfons J.M. Stams, Dirk Springael, Winnie Dejonghe and Hauke Smidt

      Version of Record online: 6 OCT 2016 | DOI: 10.1111/1462-2920.13531

    6. The genetic basis of anoxygenic photosynthetic arsenite oxidation

      Jaime Hernandez-Maldonado, Benjamin Sanchez-Sedillo, Brendon Stoneburner, Alison Boren, Laurence Miller, Shelley McCann, Michael Rosen, Ronald S. Oremland and Chad W. Saltikov

      Version of Record online: 6 OCT 2016 | DOI: 10.1111/1462-2920.13509

    7. Microbial diversity within the Trichodesmium holobiont

      Mónica Rouco, Sheean T. Haley and Sonya T. Dyhrman

      Version of Record online: 28 SEP 2016 | DOI: 10.1111/1462-2920.13513

    8. Oligotrophic lagoons of the South Pacific Ocean are home to a surprising number of novel eukaryotic microorganisms

      Eunsoo Kim, Ben Sprung, Solange Duhamel, Christopher Filardi and Mann Kyoon Shin

      Version of Record online: 28 SEP 2016 | DOI: 10.1111/1462-2920.13523

    9. Fungal community composition in soils subjected to long-term chemical fertilization is most influenced by the type of organic matter

      Ruibo Sun, Melissa Dsouza, Jack A. Gilbert, Xisheng Guo, Daozhong Wang, Zhibin Guo, Yingying Ni and Haiyan Chu

      Version of Record online: 23 SEP 2016 | DOI: 10.1111/1462-2920.13512

    10. Dense water plumes modulate richness and productivity of deep sea microbes

      Gian Marco Luna, Jacopo Chiggiato, Grazia Marina Quero, Katrin Schroeder, Lucia Bongiorni, Dimitri Kalenitchenko and Pierre E. Galand

      Version of Record online: 23 SEP 2016 | DOI: 10.1111/1462-2920.13510

  12. Highlight

    1. Old and new symbiotic partners in lachnine aphids

      Nancy A. Moran

      Version of Record online: 21 SEP 2016 | DOI: 10.1111/1462-2920.13516

  13. EMI - Research articles

    1. Hydrogen-rich water regulates effects of ROS balance on morphology, growth and secondary metabolism via glutathione peroxidase in Ganoderma lucidum

      Ang Ren, Rui Liu, Zhi-Gang Miao, Xue Zhang, Peng-Fei Cao, Tian-Xi Chen, Chen-Yang Li, Liang Shi, Ai-Liang Jiang and Ming-Wen Zhao

      Version of Record online: 9 SEP 2016 | DOI: 10.1111/1462-2920.13498

    2. You have full text access to this OnlineOpen article
      New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase

      Bram Vekeman, Frederiek-Maarten Kerckhof, Geert Cremers, Paul de Vos, Peter Vandamme, Nico Boon, Huub J.M. Op den Camp and Kim Heylen

      Version of Record online: 9 SEP 2016 | DOI: 10.1111/1462-2920.13485

  14. EMI - Research Articles

    1. Lysozyme activity of the Ruminococcus champanellensis cellulosome

      Sarah Moraïs, Darrell W. Cockburn, Yonit Ben-David, Nicole M. Koropatkin, Eric C. Martens, Sylvia H. Duncan, Harry J. Flint, Itzhak Mizrahi and Edward A. Bayer

      Version of Record online: 7 SEP 2016 | DOI: 10.1111/1462-2920.13501

    2. Photorhabdus-nematode symbiosis is dependent on hfq-mediated regulation of secondary metabolites

      Nicholas J. Tobias, Antje K. Heinrich, Helena Eresmann, Patrick R. Wright, Nick Neubacher, Rolf Backofen and Helge B. Bode

      Version of Record online: 7 SEP 2016 | DOI: 10.1111/1462-2920.13502

    3. Dissection of the HOG pathway activated by hydrogen peroxide in Saccharomyces cerevisiae

      Young Mi Lee, Eunjung Kim, Jieun An, Yeji Lee, Eunyong Choi, Wonja Choi, Eunpyo Moon and Wankee Kim

      Version of Record online: 7 SEP 2016 | DOI: 10.1111/1462-2920.13499

  15. EMI - Research article

    1. Meltwater export of prokaryotic cells from the Greenland ice sheet

      Karen A. Cameron, Marek Stibal, Jon R. Hawkings, Andreas B. Mikkelsen, Jon Telling, Tyler J. Kohler, Erkin Gözdereliler, Jakub D. Zarsky, Jemma L. Wadham and Carsten S. Jacobsen

      Version of Record online: 30 AUG 2016 | DOI: 10.1111/1462-2920.13483

    2. You have full text access to this OnlineOpen article
      Linking microbial diversity and functionality of arctic glacial surface habitats

      Stefanie Lutz, Alexandre M. Anesio, Arwyn Edwards and Liane G. Benning

      Version of Record online: 30 AUG 2016 | DOI: 10.1111/1462-2920.13494

    3. The ICEXTD of Azoarcus sp. CIB, an integrative and conjugative element with aerobic and anaerobic catabolic properties

      María Teresa Zamarro, Zaira Martín-Moldes and Eduardo Díaz

      Version of Record online: 30 AUG 2016 | DOI: 10.1111/1462-2920.13465

  16. Highlight

    1. Rhizobia: tractable models for bacterial evolutionary ecology

      Katy D. Heath and Michael A. Grillo

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13492

  17. EMI - Research article

    1. Analysis of Gambierdiscus transcriptome data supports ancient origins of mixotrophic pathways in dinoflagellates

      Dana C. Price, Natalie Farinholt, Colin Gates, Alexander Shumaker, Nicole E. Wagner, Paul Bienfang and Debashish Bhattacharya

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13478

  18. Highlight

  19. EMI - Research article

    1. Toxin-Antitoxin systems eliminate defective cells and preserve symmetry in Bacillus subtilis biofilms

      Zohar Bloom-Ackermann, Nitai Steinberg, Gili Rosenberg, Yaara Oppenheimer-Shaanan, Dan Pollack, Shir Ely, Nimrod Storzi, Asaf Levy and Ilana Kolodkin-Gal

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13471

    2. You have full text access to this OnlineOpen article
      Bipartite graph analyses reveal interdomain LGT involving ultrasmall prokaryotes and their divergent, membrane-related proteins

      Alexander L. Jaffe, Eduardo Corel, Jananan Sylvestre Pathmanathan, Philippe Lopez and Eric Bapteste

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13477

    3. Enhanced viral activity and dark CO2 fixation rates under oxygen depletion: the case study of the marine Lake Rogoznica

      Eugenio Rastelli, Cinzia Corinaldesi, Bruna Petani, Antonio Dell'Anno, Irena Ciglenečki and Roberto Danovaro

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13484

    4. Structure and function of methanogenic microbial communities in sediments of Amazonian lakes with different water types

      Yang Ji, Roey Angel, Melanie Klose, Peter Claus, Humberto Marotta, Luana Pinho, Alex Enrich-Prast and Ralf Conrad

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13491

  20. EMI - Research Articles

    1. Desulfovibrio vulgaris CbiKP cobaltochelatase: evolution of a haem binding protein orchestrated by the incorporation of two histidine residues

      Susana A.L. Lobo, Marco A.M. Videira, Isabel Pacheco, Mark N. Wass, Martin J. Warren, Miguel Teixeira, Pedro M. Matias, Célia V. Romão and Lígia M. Saraiva

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13479

  21. EMI - Minireview

    1. You have free access to this content
      Glycerol metabolism in hypersaline environments

      Aharon Oren

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13493

  22. EMI - Research article

    1. Identification of an iron permease, cFTR1, in cyanobacteria involved in the iron reduction/re-oxidation uptake pathway

      Ning Xu, Guo-Wei Qiu, Wen-Jing Lou, Zheng-Ke Li, Hai-Bo Jiang, Neil M. Price and Bao-Sheng Qiu

      Version of Record online: 24 AUG 2016 | DOI: 10.1111/1462-2920.13464

    2. You have full text access to this OnlineOpen article
      Pediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations

      Alessandra Riva, Francesca Borgo, Carlotta Lassandro, Elvira Verduci, Giulia Morace, Elisa Borghi and David Berry

      Version of Record online: 22 AUG 2016 | DOI: 10.1111/1462-2920.13463

    3. High turnover rates of aerobic anoxygenic phototrophs in European freshwater lakes

      Zuzana Cepáková, Pavel Hrouzek, Eva Žišková, Ekaterina Nuyanzina-Boldareva, Michal Šorf, Eliška Kozlíková-Zapomělová, Ivette Salka, Hans-Peter Grossart and Michal Koblížek

      Version of Record online: 22 AUG 2016 | DOI: 10.1111/1462-2920.13475

    4. What distinguishes cyanobacteria able to revive after desiccation from those that cannot: the genome aspect

      Omer Murik, Nadav Oren, Yoram Shotland, Hagai Raanan, Haim Treves, Isaac Kedem, Nir Keren, Martin Hagemann, Nadin Pade and Aaron Kaplan

      Version of Record online: 22 AUG 2016 | DOI: 10.1111/1462-2920.13486

  23. EMI - Minireview

  24. EMI - Research article

    1. Comparative metagenomics unveils functions and genome features of microbialite-associated communities along a depth gradient

      Aurélien Saghaï, Yvan Zivanovic, David Moreira, Karim Benzerara, Paola Bertolino, Marie Ragon, Rosaluz Tavera, Ana Isabel López-Archilla and Purificación López-García

      Version of Record online: 19 AUG 2016 | DOI: 10.1111/1462-2920.13456

    2. You have full text access to this OnlineOpen article
      Soil compartment is a major determinant of the impact of simulated rainfall on desert microbiota

      Shazia N. Aslam, Alex J. Dumbrell, Jamal S. Sabir, Mohammed H. Z. Mutwakil, Mohammed M. N. Baeshen, Salah E. M. Abo-Aba, Dave R. Clark, Steven A. Yates, Nabih A. Baeshen, Graham J. C. Underwood and Terry J. McGenity

      Version of Record online: 19 AUG 2016 | DOI: 10.1111/1462-2920.13474

    3. Feeding on compatible solutes: A substrate-induced pathway for uptake and catabolism of ectoines and its genetic control by EnuR

      Annina Schulz, Nadine Stöveken, Ina M. Binzen, Tamara Hoffmann, Johann Heider and Erhard Bremer

      Version of Record online: 18 AUG 2016 | DOI: 10.1111/1462-2920.13414

    4. You have full text access to this OnlineOpen article
      Oxidation of urea-derived nitrogen by thaumarchaeota-dominated marine nitrifying communities

      Bradley B. Tolar, Natalie J. Wallsgrove, Brian N. Popp and James T. Hollibaugh

      Version of Record online: 11 AUG 2016 | DOI: 10.1111/1462-2920.13457

    5. Stoichiometric modelling of assimilatory and dissimilatory biomass utilisation in a microbial community

      Kristopher A. Hunt, Ryan deM. Jennings, William P. Inskeep and Ross P. Carlson

      Version of Record online: 11 AUG 2016 | DOI: 10.1111/1462-2920.13444

  25. EMI - Research Articles

    1. YsbA and LytST are essential for pyruvate utilization in Bacillus subtilis

      Marielle H. van den Esker, Ákos T. Kovács and Oscar P. Kuipers

      Version of Record online: 9 AUG 2016 | DOI: 10.1111/1462-2920.13454

    2. You have full text access to this OnlineOpen article
      Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats

      Maria Elena Martino, Jumamurat R. Bayjanov, Brian E. Caffrey, Michiel Wels, Pauline Joncour, Sandrine Hughes, Benjamin Gillet, Michiel Kleerebezem, Sacha A.F.T. van Hijum and François Leulier

      Version of Record online: 4 AUG 2016 | DOI: 10.1111/1462-2920.13455

  26. EMI - Research article

    1. Evidence of a bacterial core in the stored products pest Plodia interpunctella: the influence of different diets

      Matteo Montagna, Valeria Mereghetti, Giorgio Gargari, Simone Guglielmetti, Franco Faoro, Giuseppe Lozzia, Daria Locatelli and Lidia Limonta

      Version of Record online: 1 AUG 2016 | DOI: 10.1111/1462-2920.13450

  27. Highlight

  28. EMI - Research article

    1. You have full text access to this OnlineOpen article
      Nanosilver inhibits nitrification and reduces ammonia-oxidising bacterial but not archaeal amoA gene abundance in estuarine sediments

      Jessica Beddow, Björn Stolpe, Paula A. Cole, Jamie R. Lead, Melanie Sapp, Brett P. Lyons, Ian Colbeck and Corinne Whitby

      Version of Record online: 29 JUL 2016 | DOI: 10.1111/1462-2920.13441

    2. Spatial and temporal variability of aerobic anoxygenic photoheterotrophic bacteria along the east coast of Australia

      Jaime Bibiloni-Isaksson, Justin R. Seymour, Tim Ingleton, Jodie van de Kamp, Levente Bodrossy and Mark V. Brown

      Version of Record online: 29 JUL 2016 | DOI: 10.1111/1462-2920.13436

    3. Energetic costs of plasmids assessed by quantitative physiological analyses

      Kathleen Trautwein, Sabine Eva Will, Reiner Hulsch, Uwe Maschmann, Katharina Wiegmann, Michael Hensler, Victoria Michael, Hanna Ruppersberg, Daniel Wünsch, Christoph Feenders, Meina Neumann-Schaal, Sabine Kaltenhäuser, Marcus Ulbrich, Kerstin Schmidt-Hohagen, Bernd Blasius, Jörn Petersen, Dietmar Schomburg and Ralf Rabus

      Version of Record online: 24 JUL 2016 | DOI: 10.1111/1462-2920.13381

  29. EMI - Research Articles

    1. Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments

      Marina N. Matos, Mariana Lozada, Luciano E. Anselmino, Matías A. Musumeci, Bernard Henrissat, Janet K. Jansson, Walter P. Mac Cormack, JoLynn Carroll, Sara Sjöling, Leif Lundgren and Hebe M. Dionisi

      Version of Record online: 18 JUL 2016 | DOI: 10.1111/1462-2920.13433

    2. Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic

      Christin M. Bennke, Karen Krüger, Lennart Kappelmann, Sixing Huang, Angélique Gobet, Margarete Schüler, Valérie Barbe, Bernhard M. Fuchs, Gurvan Michel, Hanno Teeling and Rudolf I. Amann

      Version of Record online: 18 JUL 2016 | DOI: 10.1111/1462-2920.13429

    3. Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms

      Jimena Barrero-Canosa, Cristina Moraru, Laura Zeugner, Bernhard M. Fuchs and Rudolf Amann

      Version of Record online: 18 JUL 2016 | DOI: 10.1111/1462-2920.13432

  30. EMI - Research article

    1. You have full text access to this OnlineOpen article
      Comparative genomic analysis of isoproturon-mineralizing sphingomonads reveals the isoproturon catabolic mechanism

      Xin Yan, Tao Gu, Zhongquan Yi, Junwei Huang, Xiaowei Liu, Ji Zhang, Xihui Xu, Zhihong Xin, Qing Hong, Jian He, Jim C. Spain, Shunpeng Li and Jiandong Jiang

      Version of Record online: 15 JUL 2016 | DOI: 10.1111/1462-2920.13413

    2. Expanded insecticide catabolic activity gained by a single nucleotide substitution in a bacterial carbamate hydrolase gene

      Başak Öztürk, Maarten Ghequire, Thi Phi Oanh Nguyen, René De Mot, Ruddy Wattiez and Dirk Springael

      Version of Record online: 15 JUL 2016 | DOI: 10.1111/1462-2920.13409

    3. You have full text access to this OnlineOpen article
      Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters

      Björn Brindefalk, Martin Ekman, Karolina Ininbergs, Christopher L. Dupont, Shibu Yooseph, Jarone Pinhassi and Birgitta Bergman

      Version of Record online: 14 JUL 2016 | DOI: 10.1111/1462-2920.13407

  31. EMI - Research Articles

    1. Latitude delineates patterns of biogeography in terrestrial Streptomyces

      Mallory J. Choudoir, James R. Doroghazi and Daniel H. Buckley

      Version of Record online: 12 JUL 2016 | DOI: 10.1111/1462-2920.13420

    2. Conversion of the sensor kinase DcuS of Escherichia coli of the DcuB/DcuS sensor complex to the C4-dicarboxylate responsive form by the transporter DcuB

      Sebastian Wörner, Alexander Strecker, Christian Monzel, Matthias Zeltner, Julian Witan, Andrea Ebert-Jung and Gottfried Unden

      Version of Record online: 12 JUL 2016 | DOI: 10.1111/1462-2920.13418

  32. EMI - Research article

    1. Species-sorting and mass-transfer paradigms control managed natural metacommunities

      Susanne Günther, Karoline Faust, Joachim Schumann, Hauke Harms, Jeroen Raes and Susann Müller

      Version of Record online: 8 JUL 2016 | DOI: 10.1111/1462-2920.13402

    2. Spatial distribution of aquatic marine fungi across the western Arctic and sub-arctic

      Brandon T. Hassett, Anne-Lise L Ducluzeau, Roy E. Collins and Rolf Gradinger

      Version of Record online: 7 JUL 2016 | DOI: 10.1111/1462-2920.13371

  33. EMI - Research Articles

    1. Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the ‘lipid divide’

      Laura Villanueva, Stefan Schouten and Jaap S. Sinninghe Damsté

      Version of Record online: 7 JUL 2016 | DOI: 10.1111/1462-2920.13361

    2. Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations

      Alexander J. Probst, Cindy J. Castelle, Andrea Singh, Christopher T. Brown, Karthik Anantharaman, Itai Sharon, Laura A. Hug, David Burstein, Joanne B. Emerson, Brian C. Thomas and Jillian F. Banfield

      Version of Record online: 7 JUL 2016 | DOI: 10.1111/1462-2920.13362

  34. EMI - Research article

    1. Microbial community diversity, structure and assembly across oxygen gradients in meromictic marine lakes, Palau

      Matthew S. Meyerhof, Jesse M. Wilson, Michael N. Dawson and J. Michael Beman

      Version of Record online: 4 JUL 2016 | DOI: 10.1111/1462-2920.13416

  35. EMI - Research Articles

    1. Comparative activity and functional ecology of permafrost soils and lithic niches in a hyper-arid polar desert

      Jacqueline Goordial, Alfonso Davila, Charles W. Greer, Rebecca Cannam, Jocelyne DiRuggiero, Christopher P. McKay and Lyle G. Whyte

      Version of Record online: 28 JUN 2016 | DOI: 10.1111/1462-2920.13353

  36. EMI - Research article

    1. Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms

      Adrien Bussard, Erwan Corre, Cédric Hubas, Evelyne Duvernois-Berthet, Gildas Le Corguillé, Laurent Jourdren, Fanny Coulpier, Pascal Claquin and Pascal Jean Lopez

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13398

    2. Pigment variations in Emiliania huxleyi (CCMP370) as a response to changes in light intensity or quality

      José L. Garrido, Christophe Brunet and Francisco Rodríguez

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13373

    3. Prediction of bacterial associations with plants using a supervised machine-learning approach

      Pedro Manuel Martínez-García, Emilia López-Solanilla, Cayo Ramos and Pablo Rodríguez-Palenzuela

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13389

    4. Culture-independent characterization of novel psychrophilic magnetotactic cocci from Antarctic marine sediments

      Fernanda Abreu, Ana Carolina, V. Araujo, Pedro Leão, Karen Tavares Silva, Fabíola Marques de Carvalho, Oberdan de Lima Cunha, Luiz Gonzaga Almeida, Corey Geurink, Marcos Farina, Daniel Rodelli, Luigi Jovane, Vivian H. Pellizari, Ana Tereza de Vasconcelos, Dennis A. Bazylinski and Ulysses Lins

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13388

    5. A transposon present in specific strains of Bacillus subtilis negatively affects nutrient- and dodecylamine-induced spore germination

      Antonina O. Krawczyk, Erwin M. Berendsen, Anne de Jong, Jos Boekhorst, Marjon H. J. Wells-Bennik, Oscar P. Kuipers and Robyn T. Eijlander

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13386

  37. EMI - Research articles

    1. A multiproxy approach to evaluate biocidal treatments on biodeteriorated majolica glazed tiles

      M. L. Coutinho, A. Z. Miller, P. M. Martin-Sanchez, J. Mirão, A. Gomez-Bolea, B. Machado-Moreira, L. Cerqueira-Alves, V. Jurado, C. Saiz-Jimenez, A. Lima, A. J. L. Phillips, F. Pina and M. F. Macedo

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13380

  38. EMI - Research article

    1. Competitive advantage and higher fitness in native populations of genetically structured planktonic diatoms

      Sirje Sildever, Josefin Sefbom, Inga Lips and Anna Godhe

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13372

    2. Insights into the biodiversity of the gut microbiota of broiler chickens

      Leonardo Mancabelli, Chiara Ferrario, Christian Milani, Marta Mangifesta, Francesca Turroni, Sabrina Duranti, Gabriele Andrea Lugli, Alice Viappiani, Maria Cristina Ossiprandi, Douwe van Sinderen and Marco Ventura

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13363

  39. EMI - Research Articles

    1. Metabolome-mediated biocryomorphic evolution promotes carbon fixation in Greenlandic cryoconite holes

      Joseph M. Cook, Arwyn Edwards, Mark Bulling, Luis A. J. Mur, Sophie Cook, Jarishma K. Gokul, Karen A. Cameron, Michael Sweet and Tristram D. L. Irvine-Fynn

      Version of Record online: 23 JUN 2016 | DOI: 10.1111/1462-2920.13349

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