Environmental Microbiology

Cover image for Vol. 18 Issue 12

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Kenneth N. Timmis, Martin Polz, Paola Bonfante, Rachel Whitaker, Thomas K.Wood, Jay Lennon, David Berry, Frank Stewart, Julie Huber, Juan L. Ramos and Alyson Santoro. Genomics Update Editor: Michael Galperin

Impact Factor: 5.932

ISI Journal Citation Reports © Ranking: 2015: 16/123 (Microbiology)

Online ISSN: 1462-2920

Associated Title(s): Environmental Microbiology Reports

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  1. 1 - 68
  1. EMI - Research article

    1. Happens in the best of subfamilies: establishment and repeated replacements of co-obligate secondary endosymbionts within Lachninae aphids

      Alejandro Manzano-Marín, Gitta Szabó, Jean-Christophe Simon, Matthias Horn and Amparo Latorre

      Version of Record online: 18 JAN 2017 | DOI: 10.1111/1462-2920.13633

    2. The microtubule end-binding protein FgEB1 regulates polar growth and fungicide sensitivity via different interactors in Fusarium graminearum

      Zunyong Liu, Sisi Wu, Yun Chen, Xinyue Han, Qin Gu, Yanni Yin and Zhonghua Ma

      Version of Record online: 18 JAN 2017 | DOI: 10.1111/1462-2920.13651

    3. High genetic diversity of Vibrio cholerae in the European lake Neusiedler See is associated with intensive recombination in the reed habitat and the long-distance transfer of strains

      Carina Pretzer, Irina S. Druzhinina, Carmen Amaro, Eva Benediktsdóttir, Ingela Hedenström, Dominique Hervio-Heath, Steliana Huhulescu, Franciska M. Schets, Andreas H. Farnleitner and Alexander K. T. Kirschner

      Version of Record online: 18 JAN 2017 | DOI: 10.1111/1462-2920.13612

    4. PAAR-Rhs proteins harbor various C-terminal toxins to diversify the antibacterial pathways of type VI secretion systems

      Jiale Ma, Min Sun, Wenyang Dong, Zihao Pan, Chengping Lu and Huochun Yao

      Version of Record online: 18 JAN 2017 | DOI: 10.1111/1462-2920.13621

    5. Fire modifies the phylogenetic structure of soil bacterial co-occurrence networks

      Eduardo Pérez-Valera, Marta Goberna, Karoline Faust, Jeroen Raes, Carlos García and Miguel Verdú

      Version of Record online: 18 JAN 2017 | DOI: 10.1111/1462-2920.13609

  2. Highlight

  3. EMI - Research article

    1. Bacterial community collapse: a meta-analysis of the sinonasal microbiota in chronic rhinosinusitis

      Brett Wagner Mackenzie, David W. Waite, Michael Hoggard, Richard G. Douglas, Michael W. Taylor and Kristi Biswas

      Version of Record online: 18 JAN 2017 | DOI: 10.1111/1462-2920.13632

  4. EMI - Minireview

    1. All together now: experimental multispecies biofilm model systems

      Chuan Hao Tan, Kai Wei Kelvin Lee, Mette Burmølle, Staffan Kjelleberg and Scott A. Rice

      Version of Record online: 18 JAN 2017 | DOI: 10.1111/1462-2920.13594

  5. EMI - Highlight

    1. New insights in the early extracellular events in hydrocarbon and lipid biodegradation

      Manuel Espinosa-Urgel and Silvia Marqués

      Version of Record online: 16 JAN 2017 | DOI: 10.1111/1462-2920.13608

  6. EMI - Research article

    1. You have full text access to this OnlineOpen article
      Characterization of the first cultured representative of a Bacteroidetes clade specialized on the scavenging of cyanobacteria

      Wajdi Ben Hania, Manon Joseph, Boyke Bunk, Cathrin Spröer, Hans-Peter Klenk, Marie-Laure Fardeau and Stefan Spring

      Version of Record online: 13 JAN 2017 | DOI: 10.1111/1462-2920.13639

    2. Microbial community composition but not diversity changes along succession in arctic sand dunes

      Anbu Poosakkannu, Riitta Nissinen, Minna Männistö and Minna-Maarit Kytöviita

      Version of Record online: 13 JAN 2017 | DOI: 10.1111/1462-2920.13599

  7. EMI - Highlight

    1. The unexpected versatility of the cellulosome

      David Berry

      Version of Record online: 13 JAN 2017 | DOI: 10.1111/1462-2920.13598

  8. EMI - Research article

    1. Identification of two mutations that cause defects in the ligninolytic system through an efficient forward genetics in the white-rot agaricomycete Pleurotus ostreatus

      Takehito Nakazawa, Ayako Izuno, Rina Kodera, Yasumasa Miyazaki, Masahiro Sakamoto, Yuji Isagi and Yoichi Honda

      Version of Record online: 12 JAN 2017 | DOI: 10.1111/1462-2920.13595

    2. Diet-induced changes of redox potential underlie compositional shifts in the rumen archaeal community

      Nir Friedman, Eran Shriker, Ben Gold, Thomer Durman, Raphy Zarecki, Eytan Ruppin and Itzhak Mizrahi

      Version of Record online: 12 DEC 2016 | DOI: 10.1111/1462-2920.13551

    3. Photoprotective and antioxidant responses to light spectrum and intensity variations in the coastal diatom Skeletonema marinoi

      Arianna Smerilli, Ida Orefice, Federico Corato, Antonio Gavalás Olea, Alexander V. Ruban and Christophe Brunet

      Version of Record online: 12 DEC 2016 | DOI: 10.1111/1462-2920.13545

    4. Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene

      Carlos Molina-Santiago, Zulema Udaondo, María Gómez-Lozano, Soren Molin and Juan-Luis Ramos

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13585

    5. The extracellular matrix of the oleolytic biofilms of Marinobacter hydrocarbonoclasticus comprises cytoplasmic proteins and T2SS effectors that promote growth on hydrocarbons and lipids

      Habiba Ennouri, Paul d'Abzac, Florence Hakil, Priscilla Branchu, Murielle Naïtali, Anne-Marie Lomenech, Ridha Oueslati, Jacques Desbrières, Pierre Sivadon and Régis Grimaud

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13547

    6. Microbial processes of the carbon and sulfur cycles in an ice-covered, iron-rich meromictic lake Svetloe (Arkhangelsk region, Russia)

      Alexander S. Savvichev, Natalia M. Kokryatskaya, Svetlana A. Zabelina, Igor I. Rusanov, Elena E. Zakharova, Elena F. Veslopolova, Olga N. Lunina, Ekaterina O. Patutina, Boris K. Bumazhkin, Denis S. Gruzdev, Pavel A. Sigalevich, Nikolay V. Pimenov, Boris B. Kuznetsov and Vladimir M. Gorlenko

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13591

  9. EMI - Minireview

    1. You have free access to this content
      Formation of propionate and butyrate by the human colonic microbiota

      Petra Louis and Harry J. Flint

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13589

  10. EMI - Research article

    1. Phylogeography and pigment type diversity of Synechococcus cyanobacteria in surface waters of the northwestern pacific ocean

      Xiaomin Xia, Frédéric Partensky, Laurence Garczarek, Koji Suzuki, Cui Guo, Shun Yan Cheung and Hongbin Liu

      Version of Record online: 8 DEC 2016 | DOI: 10.1111/1462-2920.13541

  11. EMI - Minireview

    1. You have free access to this content
      Glycerol metabolism of haloarchaea

      Timothy J. Williams, Michelle Allen, Bernhard Tschitschko and Ricardo Cavicchioli

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13580

  12. EMI - Research article

    1. Oral application of Escherichia coli bacteriophage: safety tests in healthy and diarrheal children from Bangladesh

      Shafiqul Alam Sarker, Bernard Berger, Ying Deng, Silas Kieser, Francis Foata, Deborah Moine, Patrick Descombes, Shamima Sultana, Sayeeda Huq, Pradip Kumar Bardhan, Valérie Vuillet, Fabienne Praplan and Harald Brüssow

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13574

  13. EMI - Special Issue Article

    1. You have full text access to this OnlineOpen article
      Glycerol enhances fungal germination at the water-activity limit for life

      Andrew Stevenson, Philip G. Hamill, Ángel Medina, Gerhard Kminek, John D. Rummel, Jan Dijksterhuis, David J. Timson, Naresh Magan, Su-Lin L. Leong and John E. Hallsworth

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13530

  14. EMI - Research article

    1. Global expression analysis of the response to microaerobiosis reveals an important cue for endophytic establishment of Azoarcus sp. BH72

      Abhijit Sarkar, Marta Marszalkowska, Martin Schäfer, Tobias Pees, Hannah Klingenberg, Franziska Macht and Barbara Reinhold-Hurek

      Version of Record online: 13 NOV 2016 | DOI: 10.1111/1462-2920.13569

    2. Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome

      Lizi Bensoussan, Sarah Moraïs, Bareket Dassa, Nir Friedman, Bernard Henrissat, Vincent Lombard, Edward A. Bayer and Itzhak Mizrahi

      Version of Record online: 28 OCT 2016 | DOI: 10.1111/1462-2920.13561

  15. EMI - Opinion

    1. Replicate and randomize, or lie

      R. Webster

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/1462-2920.13533

  16. EMI - Highlight

  17. EMI - Research article

    1. Water mass mixing shapes bacterial biogeography in a highly hydrodynamic region of the Southern Ocean

      Víctor Hernando-Morales, Julia Ameneiro and Eva Teira

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/1462-2920.13538

    2. Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

      Siavash Atashgahi, Yue Lu, Ying Zheng, Edoardo Saccenti, Maria Suarez-Diez, Javier Ramiro-Garcia, Heinrich Eisenmann, Martin Elsner, Alfons J.M. Stams, Dirk Springael, Winnie Dejonghe and Hauke Smidt

      Version of Record online: 6 OCT 2016 | DOI: 10.1111/1462-2920.13531

    3. The genetic basis of anoxygenic photosynthetic arsenite oxidation

      Jaime Hernandez-Maldonado, Benjamin Sanchez-Sedillo, Brendon Stoneburner, Alison Boren, Laurence Miller, Shelley McCann, Michael Rosen, Ronald S. Oremland and Chad W. Saltikov

      Version of Record online: 6 OCT 2016 | DOI: 10.1111/1462-2920.13509

  18. Highlight

    1. Old and new symbiotic partners in lachnine aphids

      Nancy A. Moran

      Version of Record online: 21 SEP 2016 | DOI: 10.1111/1462-2920.13516

  19. EMI - Research articles

    1. Hydrogen-rich water regulates effects of ROS balance on morphology, growth and secondary metabolism via glutathione peroxidase in Ganoderma lucidum

      Ang Ren, Rui Liu, Zhi-Gang Miao, Xue Zhang, Peng-Fei Cao, Tian-Xi Chen, Chen-Yang Li, Liang Shi, Ai-Liang Jiang and Ming-Wen Zhao

      Version of Record online: 9 SEP 2016 | DOI: 10.1111/1462-2920.13498

  20. EMI - Research Articles

    1. Photorhabdus-nematode symbiosis is dependent on hfq-mediated regulation of secondary metabolites

      Nicholas J. Tobias, Antje K. Heinrich, Helena Eresmann, Patrick R. Wright, Nick Neubacher, Rolf Backofen and Helge B. Bode

      Version of Record online: 7 SEP 2016 | DOI: 10.1111/1462-2920.13502

    2. Dissection of the HOG pathway activated by hydrogen peroxide in Saccharomyces cerevisiae

      Young Mi Lee, Eunjung Kim, Jieun An, Yeji Lee, Eunyong Choi, Wonja Choi, Eunpyo Moon and Wankee Kim

      Version of Record online: 7 SEP 2016 | DOI: 10.1111/1462-2920.13499

  21. EMI - Research article

    1. Meltwater export of prokaryotic cells from the Greenland ice sheet

      Karen A. Cameron, Marek Stibal, Jon R. Hawkings, Andreas B. Mikkelsen, Jon Telling, Tyler J. Kohler, Erkin Gözdereliler, Jakub D. Zarsky, Jemma L. Wadham and Carsten S. Jacobsen

      Version of Record online: 30 AUG 2016 | DOI: 10.1111/1462-2920.13483

    2. You have full text access to this OnlineOpen article
      Linking microbial diversity and functionality of arctic glacial surface habitats

      Stefanie Lutz, Alexandre M. Anesio, Arwyn Edwards and Liane G. Benning

      Version of Record online: 30 AUG 2016 | DOI: 10.1111/1462-2920.13494

  22. Highlight

  23. EMI - Research Articles

    1. Desulfovibrio vulgaris CbiKP cobaltochelatase: evolution of a haem binding protein orchestrated by the incorporation of two histidine residues

      Susana A.L. Lobo, Marco A.M. Videira, Isabel Pacheco, Mark N. Wass, Martin J. Warren, Miguel Teixeira, Pedro M. Matias, Célia V. Romão and Lígia M. Saraiva

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13479

  24. EMI - Minireview

    1. You have free access to this content
      Glycerol metabolism in hypersaline environments

      Aharon Oren

      Version of Record online: 25 AUG 2016 | DOI: 10.1111/1462-2920.13493

  25. EMI - Research article

    1. You have full text access to this OnlineOpen article
      Pediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations

      Alessandra Riva, Francesca Borgo, Carlotta Lassandro, Elvira Verduci, Giulia Morace, Elisa Borghi and David Berry

      Version of Record online: 22 AUG 2016 | DOI: 10.1111/1462-2920.13463

    2. What distinguishes cyanobacteria able to revive after desiccation from those that cannot: the genome aspect

      Omer Murik, Nadav Oren, Yoram Shotland, Hagai Raanan, Haim Treves, Isaac Kedem, Nir Keren, Martin Hagemann, Nadin Pade and Aaron Kaplan

      Version of Record online: 22 AUG 2016 | DOI: 10.1111/1462-2920.13486

  26. EMI - Minireview

  27. EMI - Research article

    1. Feeding on compatible solutes: A substrate-induced pathway for uptake and catabolism of ectoines and its genetic control by EnuR

      Annina Schulz, Nadine Stöveken, Ina M. Binzen, Tamara Hoffmann, Johann Heider and Erhard Bremer

      Version of Record online: 18 AUG 2016 | DOI: 10.1111/1462-2920.13414

    2. You have full text access to this OnlineOpen article
      Oxidation of urea-derived nitrogen by thaumarchaeota-dominated marine nitrifying communities

      Bradley B. Tolar, Natalie J. Wallsgrove, Brian N. Popp and James T. Hollibaugh

      Version of Record online: 11 AUG 2016 | DOI: 10.1111/1462-2920.13457

  28. EMI - Research Articles

    1. YsbA and LytST are essential for pyruvate utilization in Bacillus subtilis

      Marielle H. van den Esker, Ákos T. Kovács and Oscar P. Kuipers

      Version of Record online: 9 AUG 2016 | DOI: 10.1111/1462-2920.13454

  29. Highlight

  30. EMI - Research article

    1. You have full text access to this OnlineOpen article
      Nanosilver inhibits nitrification and reduces ammonia-oxidising bacterial but not archaeal amoA gene abundance in estuarine sediments

      Jessica Beddow, Björn Stolpe, Paula A. Cole, Jamie R. Lead, Melanie Sapp, Brett P. Lyons, Ian Colbeck and Corinne Whitby

      Version of Record online: 29 JUL 2016 | DOI: 10.1111/1462-2920.13441

  31. EMI - Research Articles

    1. Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms

      Jimena Barrero-Canosa, Cristina Moraru, Laura Zeugner, Bernhard M. Fuchs and Rudolf Amann

      Version of Record online: 18 JUL 2016 | DOI: 10.1111/1462-2920.13432

  32. EMI - Research article

    1. Spatial distribution of aquatic marine fungi across the western Arctic and sub-arctic

      Brandon T. Hassett, Anne-Lise L Ducluzeau, Roy E. Collins and Rolf Gradinger

      Version of Record online: 7 JUL 2016 | DOI: 10.1111/1462-2920.13371

  33. EMI - Research Articles

    1. Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the ‘lipid divide’

      Laura Villanueva, Stefan Schouten and Jaap S. Sinninghe Damsté

      Version of Record online: 7 JUL 2016 | DOI: 10.1111/1462-2920.13361

    2. Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations

      Alexander J. Probst, Cindy J. Castelle, Andrea Singh, Christopher T. Brown, Karthik Anantharaman, Itai Sharon, Laura A. Hug, David Burstein, Joanne B. Emerson, Brian C. Thomas and Jillian F. Banfield

      Version of Record online: 7 JUL 2016 | DOI: 10.1111/1462-2920.13362

    3. Comparative activity and functional ecology of permafrost soils and lithic niches in a hyper-arid polar desert

      Jacqueline Goordial, Alfonso Davila, Charles W. Greer, Rebecca Cannam, Jocelyne DiRuggiero, Christopher P. McKay and Lyle G. Whyte

      Version of Record online: 28 JUN 2016 | DOI: 10.1111/1462-2920.13353

  34. EMI - Research article

    1. Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms

      Adrien Bussard, Erwan Corre, Cédric Hubas, Evelyne Duvernois-Berthet, Gildas Le Corguillé, Laurent Jourdren, Fanny Coulpier, Pascal Claquin and Pascal Jean Lopez

      Version of Record online: 27 JUN 2016 | DOI: 10.1111/1462-2920.13398

    2. You have full text access to this OnlineOpen article
      Dealing with salinity extremes and nitrogen limitation – an unexpected strategy of the marine bacterium Dinoroseobacter shibae

      Sarah Kleist, Marcus Ulbrich, Nelli Bill, Kerstin Schmidt-Hohagen, Robert Geffers and Dietmar Schomburg

      Version of Record online: 15 JUN 2016 | DOI: 10.1111/1462-2920.13266

  35. EMI - Research Articles

    1. You have full text access to this OnlineOpen article
      Archaea produce lower yields of N2O than bacteria during aerobic ammonia oxidation in soil

      Linda Hink, Graeme W. Nicol and James I. Prosser

      Version of Record online: 28 APR 2016 | DOI: 10.1111/1462-2920.13282

  36. EMI - Research article

    1. Modularity of nitrogen-oxide reducing soil bacteria: linking phenotype to genotype

      Constance A. Roco, Linda L. Bergaust, Lars R. Bakken, Joseph B. Yavitt and James P. Shapleigh

      Version of Record online: 21 MAR 2016 | DOI: 10.1111/1462-2920.13250

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