Molecular Ecology Resources

Cover image for Vol. 16 Issue 3

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Shawn Narum

Impact Factor: 3.712

ISI Journal Citation Reports © Ranking: 2014: 16/46 (Evolutionary Biology); 30/145 (Ecology); 86/290 (Biochemistry & Molecular Biology)

Online ISSN: 1755-0998

Associated Title(s): Molecular Ecology


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  1. Special Issue: Sequence Capture

    1. Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms

      Hao Yuan, Jiamei Jiang, Francisco Agustín Jiménez, Eric P. Hoberg, Joseph A. Cook, Kurt E. Galbreath and Chenhong Li

      Article first published online: 28 APR 2016 | DOI: 10.1111/1755-0998.12532

  2. Resource Articles

    1. A genes eye view of ontogeny: de novo assembly and profiling of the Gryllus rubens transcriptome

      Emma L. Berdan, Thomas Blankers, Isabelle Waurick, Camila J. Mazzoni and Frieder Mayer

      Article first published online: 24 APR 2016 | DOI: 10.1111/1755-0998.12530

  3. News and Views

    1. Opinion

      You have free access to this content
      The importance of including imperfect detection models in eDNA experimental design

      Janna R. Willoughby, Bhagya K. Wijayawardena, Mekala Sundaram, Robert K. Swihart and J. Andrew DeWoody

      Article first published online: 24 APR 2016 | DOI: 10.1111/1755-0998.12531

  4. Resource Articles

    1. Evaluation of TagSeq, a reliable low-cost alternative for RNAseq

      Brian K. Lohman, Jesse N. Weber and Daniel I. Bolnick

      Article first published online: 22 APR 2016 | DOI: 10.1111/1755-0998.12529

    2. Revisiting the ichthyodiversity of Java and Bali through DNA barcodes: taxonomic coverage, identification accuracy, cryptic diversity and identification of exotic species

      Hadi Dahruddin, Aditya Hutama, Frédéric Busson, Sopian Sauri, Robert Hanner, Philippe Keith, Renny Hadiaty and Nicolas Hubert

      Article first published online: 19 APR 2016 | DOI: 10.1111/1755-0998.12528

  5. Special Issue: Sequence Capture

    1. Simultaneous identification of host, ectoparasite and pathogen DNA via in-solution capture

      Michael G. Campana, Melissa T. R. Hawkins, Lauren H. Henson, Kristin Stewardson, Hillary S. Young, Leah R. Card, Justin Lock, Bernard Agwanda, Jory Brinkerhoff, Holly D. Gaff, Kristofer M. Helgen, Jesús E. Maldonado, William J. McShea and Robert C. Fleischer

      Article first published online: 4 APR 2016 | DOI: 10.1111/1755-0998.12524

    2. You have full text access to this OnlineOpen article
      A new virus discovered by immunocapture of double-stranded RNA, a rapid method for virus enrichment in metagenomic studies

      Arnaud G. Blouin, Howard A. Ross, Jody Hobson-Peters, Caitlin A. O'Brien, Ben Warren and Robin MacDiarmid

      Article first published online: 4 APR 2016 | DOI: 10.1111/1755-0998.12525

  6. Resource Articles

    1. Finding the right coverage: the impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates

      Emily D. Fountain, Jonathan N. Pauli, Brendan N. Reid, Per J. Palsbøll and M. Zachariah Peery

      Article first published online: 25 MAR 2016 | DOI: 10.1111/1755-0998.12519

    2. Identification of CR1 retroposons in Arborophila rufipectus and their application to Phasianidae phylogeny

      Yaoyao Cui, Chaochao Yan, Tianlin Sun, Jing Li, Bisong Yue, Xiuyue Zhang and Jing Li

      Article first published online: 25 MAR 2016 | DOI: 10.1111/1755-0998.12514

    3. New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array

      P. Faivre-Rampant, G. Zaina, V. Jorge, S. Giacomello, V. Segura, S. Scalabrin, V. Guérin, E. De Paoli, C. Aluome, M. Viger, F. Cattonaro, A. Payne, P. PaulStephenRaj, M. C. Le Paslier, A. Berard, M. R. Allwright, M. Villar, G. Taylor, C. Bastien and M. Morgante

      Article first published online: 24 MAR 2016 | DOI: 10.1111/1755-0998.12513

    4. Population structure of Atlantic mackerel inferred from RAD-seq-derived SNP markers: effects of sequence clustering parameters and hierarchical SNP selection

      Naiara Rodríguez-Ezpeleta, Ian R. Bradbury, Iñaki Mendibil, Paula Álvarez, Unai Cotano and Xabier Irigoien

      Article first published online: 22 MAR 2016 | DOI: 10.1111/1755-0998.12518

    5. Cryptic diversity revealed by DNA barcoding in Colombian illegally traded bird species

      Ángela María Mendoza, María Fernanda Torres, Andrea Paz, Natalia Trujillo-Arias, Diana López-Alvarez, Socorro Sierra, Fernando Forero and Mailyn A. Gonzalez

      Article first published online: 21 MAR 2016 | DOI: 10.1111/1755-0998.12515

    6. cloncase: Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms

      Sajid Ali, Samuel Soubeyrand, Pierre Gladieux, Tatiana Giraud, Marc Leconte, Angélique Gautier, Mamadou Mboup, Wanquan Chen, Claude de Vallavieille-Pope and Jérôme Enjalbert

      Article first published online: 6 MAR 2016 | DOI: 10.1111/1755-0998.12511

    7. Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations

      J. M. Yáñez, S. Naswa, M. E. López, L. Bassini, K. Correa, J. Gilbey, L. Bernatchez, A. Norris, R. Neira, J. P. Lhorente, P. S. Schnable, S. Newman, A. Mileham, N. Deeb, A. Di Genova and A. Maass

      Article first published online: 1 MAR 2016 | DOI: 10.1111/1755-0998.12503

    8. Optimization of AFLP for extremely large genomes over 70 Gb

      Petra Veselá, Daniel Volařík and Jaroslav Mráček

      Article first published online: 26 FEB 2016 | DOI: 10.1111/1755-0998.12506

    9. Fine-tuning for the tropics: application of eDNA technology for invasive fish detection in tropical freshwater ecosystems

      Heather L. A. Robson, Tansyn H. Noble, Richard J. Saunders, Simon K. A. Robson, Damien W. Burrows and Dean R. Jerry

      Article first published online: 24 FEB 2016 | DOI: 10.1111/1755-0998.12505

    10. A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them

      E. Humble, A. Martinez-Barrio, J. Forcada, P. N. Trathan, M. A. S. Thorne, M. Hoffmann, J. B. W. Wolf and J. I. Hoffman

      Article first published online: 20 JAN 2016 | DOI: 10.1111/1755-0998.12502

  7. Special Issue: Sequence Capture

    1. Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)

      Roswitha Schmickl, Aaron Liston, Vojtěch Zeisek, Kenneth Oberlander, Kevin Weitemier, Shannon C. K. Straub, Richard C. Cronn, Léanne L. Dreyer and Jan Suda

      Article first published online: 15 DEC 2015 | DOI: 10.1111/1755-0998.12487

    2. You have full text access to this OnlineOpen article
      Sequence capture of ultraconserved elements from bird museum specimens

      John E. McCormack, Whitney L.E. Tsai and Brant C. Faircloth

      Article first published online: 24 OCT 2015 | DOI: 10.1111/1755-0998.12466

    3. You have full text access to this OnlineOpen article
      In-solution hybridization for mammalian mitogenome enrichment: pros, cons and challenges associated with multiplexing degraded DNA

      Melissa T. R. Hawkins, Courtney A. Hofman, Taylor Callicrate, Molly M. McDonough, Mirian T. N. Tsuchiya, Eliécer E. Gutiérrez, Kristofer M. Helgen and Jesus E. Maldonado

      Article first published online: 24 AUG 2015 | DOI: 10.1111/1755-0998.12448

    4. Exon capture phylogenomics: efficacy across scales of divergence

      Jason G. Bragg, Sally Potter, Ke Bi and Craig Moritz

      Article first published online: 20 AUG 2015 | DOI: 10.1111/1755-0998.12449


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