Molecular Ecology Resources

Cover image for Vol. 15 Issue 5

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Shawn Narum

Impact Factor: 3.712

ISI Journal Citation Reports © Ranking: 2014: 16/46 (Evolutionary Biology); 30/144 (Ecology); 86/289 (Biochemistry & Molecular Biology)

Online ISSN: 1755-0998

Associated Title(s): Molecular Ecology


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  1. Resource Articles

    1. The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities

      Tomáš Větrovský, Miroslav Kolařík, Lucia Žifčáková, Tomáš Zelenka and Petr Baldrian

      Article first published online: 4 SEP 2015 | DOI: 10.1111/1755-0998.12456

    2. amplisas: a web server for multilocus genotyping using next-generation amplicon sequencing data

      Alvaro Sebastian, Magdalena Herdegen, Magdalena Migalska and Jacek Radwan

      Article first published online: 26 AUG 2015 | DOI: 10.1111/1755-0998.12453

  2. Special Issue: Sequence Capture

    1. You have full text access to this OnlineOpen article
      In-solution hybridization for mammalian mitogenome enrichment: pros, cons and challenges associated with multiplexing degraded DNA

      Melissa T. R. Hawkins, Courtney A. Hofman, Taylor Callicrate, Molly M. McDonough, Mirian T. N. Tsuchiya, Eliécer E. Gutiérrez, Kristofer M. Helgen and Jesus E. Maldonado

      Article first published online: 24 AUG 2015 | DOI: 10.1111/1755-0998.12448

  3. Resource Articles

  4. Special Issue: Sequence Capture

    1. Exon capture phylogenomics: efficacy across scales of divergence

      Jason G. Bragg, Sally Potter, Ke Bi and Craig Moritz

      Article first published online: 20 AUG 2015 | DOI: 10.1111/1755-0998.12449

  5. Resource Articles

    1. A nonlethal sampling method to obtain, generate and assemble whole blood transcriptomes from small, wild mammals

      Zixia Huang, Aurore Gallot, Nga T. Lao, Sébastien J. Puechmaille, Nicole M. Foley, David Jebb, Michaël Bekaert and Emma C. Teeling

      Article first published online: 4 AUG 2015 | DOI: 10.1111/1755-0998.12447

    2. You have full text access to this OnlineOpen article
      Untangling taxonomy: a DNA barcode reference library for Canadian spiders

      Gergin A. Blagoev, Jeremy R. deWaard, Sujeevan Ratnasingham, Stephanie L. deWaard, Liuqiong Lu, James Robertson, Angela C. Telfer and Paul D. N. Hebert

      Article first published online: 26 JUL 2015 | DOI: 10.1111/1755-0998.12444

    3. netview p: a network visualization tool to unravel complex population structure using genome-wide SNPs

      Eike J. Steinig, Markus Neuditschko, Mehar S. Khatkar, Herman W. Raadsma and Kyall R. Zenger

      Article first published online: 24 JUL 2015 | DOI: 10.1111/1755-0998.12442

    4. You have full text access to this OnlineOpen article
      The de novo genome assembly and annotation of a female domestic dromedary of North African origin

      Robert R. Fitak, Elmira Mohandesan, Jukka Corander and Pamela A. Burger

      Article first published online: 24 JUL 2015 | DOI: 10.1111/1755-0998.12443

    5. Starting a DNA barcode reference library for shallow water polychaetes from the southern European Atlantic coast

      Jorge Lobo, Marcos A. L. Teixeira, Luisa M. S. Borges, Maria S. G. Ferreira, Claudia Hollatz, Pedro T. Gomes, Ronaldo Sousa, Ascensão Ravara, Maria H. Costa and Filipe O. Costa

      Article first published online: 21 JUL 2015 | DOI: 10.1111/1755-0998.12441

    6. Identification of North Sea molluscs with DNA barcoding

      Andrea Barco, Michael J. Raupach, Silke Laakmann, Hermann Neumann and Thomas Knebelsberger

      Article first published online: 3 JUL 2015 | DOI: 10.1111/1755-0998.12440

    7. simMSG: an experimental design tool for high-throughput genotyping of hybrids

      Molly Schumer, Rongfeng Cui, Gil G. Rosenthal and Peter Andolfatto

      Article first published online: 3 JUL 2015 | DOI: 10.1111/1755-0998.12434

    8. You have full text access to this OnlineOpen article
      Molecular prey identification in Central European piscivores

      Bettina Thalinger, Johannes Oehm, Hannes Mayr, Armin Obwexer, Christiane Zeisler and Michael Traugott

      Article first published online: 21 JUN 2015 | DOI: 10.1111/1755-0998.12436

    9. You have full text access to this OnlineOpen article
      Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

      Nathan T. Evans, Brett P. Olds, Mark A. Renshaw, Cameron R. Turner, Yiyuan Li, Christopher L. Jerde, Andrew R. Mahon, Michael E. Pfrender, Gary A. Lamberti and David M. Lodge

      Article first published online: 18 JUN 2015 | DOI: 10.1111/1755-0998.12433

    10. Posterior predictive checks of coalescent models: P2C2M, an R package

      Michael Gruenstaeudl, Noah M. Reid, Gregory L. Wheeler and Bryan C. Carstens

      Article first published online: 15 JUN 2015 | DOI: 10.1111/1755-0998.12435

    11. You have full text access to this OnlineOpen article
    12. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

      Christophe Plomion, Jean-Marc Aury, Joëlle Amselem, Tina Alaeitabar, Valérie Barbe, Caroline Belser, Hélène Bergès, Catherine Bodénès, Nathalie Boudet, Christophe Boury, Aurélie Canaguier, Arnaud Couloux, Corinne Da Silva, Sébastien Duplessis, François Ehrenmann, Barbara Estrada-Mairey, Stéphanie Fouteau, Nicolas Francillonne, Christine Gaspin, Cécile Guichard, Christophe Klopp, Karine Labadie, Céline Lalanne, Isabelle Le Clainche, Jean-Charles Leplé, Grégoire Le Provost, Thibault Leroy, Isabelle Lesur, Francis Martin, Jonathan Mercier, Célia Michotey, Florent Murat, Franck Salin, Delphine Steinbach, Patricia Faivre-Rampant, Patrick Wincker, Jérôme Salse, Hadi Quesneville and Antoine Kremer

      Article first published online: 29 MAY 2015 | DOI: 10.1111/1755-0998.12425

    13. A genomewide catalogue of single nucleotide polymorphisms in white-beaked and Atlantic white-sided dolphins

      R. Fernández, M. Schubert, A. M. Vargas-Velázquez, A. Brownlow, G. A. Víkingsson, U. Siebert, L. F. Jensen, N. Øien, D. Wall, E. Rogan, B. Mikkelsen, W. Dabin, A. H. Alfarhan, S. A. Alquraishi, K. A. S. Al-Rasheid, G. Guillot and L. Orlando

      Article first published online: 29 MAY 2015 | DOI: 10.1111/1755-0998.12427

    14. obitools: a unix-inspired software package for DNA metabarcoding

      Frédéric Boyer, Céline Mercier, Aurélie Bonin, Yvan Le Bras, Pierre Taberlet and Eric Coissac

      Article first published online: 26 MAY 2015 | DOI: 10.1111/1755-0998.12428

    15. Impact of enrichment conditions on cross-species capture of fresh and degraded DNA

      Johanna L. A. Paijmans, Joerns Fickel, Alexandre Courtiol, Michael Hofreiter and Daniel W. Förster

      Article first published online: 13 MAY 2015 | DOI: 10.1111/1755-0998.12420

    16. Node-based measures of connectivity in genetic networks

      Erin L. Koen, Jeff Bowman and Paul J. Wilson

      Article first published online: 12 MAY 2015 | DOI: 10.1111/1755-0998.12423

    17. Disentangling mite predator-prey relationships by multiplex PCR

      Consuelo Pérez-Sayas, Tatiana Pina, María A. Gómez-Martínez, Gemma Camañes, María V. Ibáñez-Gual, Josep A. Jaques and Mónica A. Hurtado

      Article first published online: 7 MAY 2015 | DOI: 10.1111/1755-0998.12409

    18. Identifying differentially expressed genes under heat stress and developing molecular markers in orchardgrass (Dactylis glomerata L.) through transcriptome analysis

      L. K. Huang, H. D. Yan, X. X. Zhao, X. Q. Zhang, J. Wang, T. Frazier, G. Yin, X. Huang, D. F. Yan, W. J. Zang, X. Ma, Y. Peng, Y. H. Yan and W. Liu

      Article first published online: 7 MAY 2015 | DOI: 10.1111/1755-0998.12418

    19. Comprehensive DNA barcoding of the herpetofauna of Germany

      O. Hawlitschek, J. Morinière, A. Dunz, M. Franzen, D. Rödder, F. Glaw and G. Haszprunar

      Article first published online: 5 MAY 2015 | DOI: 10.1111/1755-0998.12416

    20. A microsatellite-based linkage map for song sparrows (Melospiza melodia)

      Pirmin Nietlisbach, Glauco Camenisch, Thomas Bucher, Jon Slate, Lukas F. Keller and Erik Postma

      Article first published online: 1 MAY 2015 | DOI: 10.1111/1755-0998.12414

    21. Accelerating plant DNA barcode reference library construction using herbarium specimens: improved experimental techniques

      Chao Xu, Wenpan Dong, Shuo Shi, Tao Cheng, Changhao Li, Yanlei Liu, Ping Wu, Hongkun Wu, Peng Gao and Shiliang Zhou

      Article first published online: 28 APR 2015 | DOI: 10.1111/1755-0998.12413

    22. A new method for studying population genetics of cyst nematodes based on Pool-Seq and genomewide allele frequency analysis

      Benjamin Mimee, Marc-Olivier Duceppe, Pierre-Yves Véronneau, Joël Lafond-Lapalme, Martine Jean, François Belzile and Guy Bélair

      Article first published online: 21 APR 2015 | DOI: 10.1111/1755-0998.12412

    23. A SNP test to identify Africanized honeybees via proportion of ‘African’ ancestry

      Nadine C. Chapman, Brock A. Harpur, Julianne Lim, Thomas E. Rinderer, Michael H. Allsopp, Amro Zayed and Benjamin P. Oldroyd

      Article first published online: 20 APR 2015 | DOI: 10.1111/1755-0998.12411

    24. PFR2: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution

      Raphaël Morard, Kate F. Darling, Frédéric Mahé, Stéphane Audic, Yurika Ujiié, Agnes K. M. Weiner, Aurore André, Heidi A. Seears, Christopher M. Wade, Frédéric Quillévéré, Christophe J. Douady, Gilles Escarguel, Thibault de Garidel-Thoron, Michael Siccha, Michal Kucera and Colomban de Vargas

      Article first published online: 15 APR 2015 | DOI: 10.1111/1755-0998.12410

    25. You have full text access to this OnlineOpen article
      Pyrosequencing and de novo assembly of Antarctic krill (Euphausia superba) transcriptome to study the adaptability of krill to climate-induced environmental changes

      B. Meyer, P. Martini, A. Biscontin, C. De Pittà, C. Romualdi, M. Teschke, S. Frickenhaus, L. Harms, U. Freier, S. Jarman and S. Kawaguchi

      Article first published online: 9 APR 2015 | DOI: 10.1111/1755-0998.12408

    26. Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks

      C. Lepoittevin, C. Bodénès, E. Chancerel, L. Villate, T. Lang, I. Lesur, C. Boury, F. Ehrenmann, D. Zelenica, A. Boland, C. Besse, P. Garnier-Géré, C. Plomion and A. Kremer

      Article first published online: 6 APR 2015 | DOI: 10.1111/1755-0998.12407

    27. PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

      Johan Decelle, Sarah Romac, Rowena F. Stern, El Mahdi Bendif, Adriana Zingone, Stéphane Audic, Michael D. Guiry, Laure Guillou, Désiré Tessier, Florence Le Gall, Priscillia Gourvil, Adriana L. Dos Santos, Ian Probert, Daniel Vaulot, Colomban de Vargas and Richard Christen

      Article first published online: 6 APR 2015 | DOI: 10.1111/1755-0998.12401

    28. Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)

      Carly F. Graham, Travis C. Glenn, Andrew G. McArthur, Douglas R. Boreham, Troy Kieran, Stacey Lance, Richard G. Manzon, Jessica A. Martino, Todd Pierson, Sean M. Rogers, Joanna Y. Wilson and Christopher M. Somers

      Article first published online: 1 APR 2015 | DOI: 10.1111/1755-0998.12404

    29. Scrimer: designing primers from transcriptome data

      Libor Mořkovský, Jan Pačes, Jakub Rídl and Radka Reifová

      Article first published online: 31 MAR 2015 | DOI: 10.1111/1755-0998.12403

    30. Towards a universal barcode of oomycetes – a comparison of the cox1 and cox2 loci

      Young-Joon Choi, Gordon Beakes, Sally Glockling, Julia Kruse, Bora Nam, Lisa Nigrelli, Sebastian Ploch, Hyeon-Dong Shin, Roger G. Shivas, Sabine Telle, Hermann Voglmayr and Marco Thines

      Article first published online: 24 MAR 2015 | DOI: 10.1111/1755-0998.12398

    31. You have full text access to this OnlineOpen article
      Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus, Osmeridae), an anadromous Pacific smelt

      John R. Candy, Nathan R. Campbell, Matthew H. Grinnell, Terry D. Beacham, Wesley A. Larson and Shawn R. Narum

      Article first published online: 23 MAR 2015 | DOI: 10.1111/1755-0998.12400

    32. metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

      Johan Bengtsson-Palme, Martin Hartmann, Karl Martin Eriksson, Chandan Pal, Kaisa Thorell, Dan Göran Joakim Larsson and Rolf Henrik Nilsson

      Article first published online: 23 MAR 2015 | DOI: 10.1111/1755-0998.12399


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