Molecular Ecology Resources

© Blackwell Publishing Ltd

Cover image for Vol. 13 Issue 3

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Kevin Livingstone

Impact Factor: 3.062

ISI Journal Citation Reports © Ranking: 2011: 19/45 (Evolutionary Biology); 37/134 (Ecology); 124/290 (Biochemistry & Molecular Biology)

Online ISSN: 1755-0998

Associated Title(s): Molecular Ecology

  1. Resource Articles

    1. DNA barcoding commercially important fish species of Turkey

      Emre Keskİn and Hasan H. Atar

      Article first published online: 14 MAY 2013 | DOI: 10.1111/1755-0998.12120

    2. Nuclear mitochondrial pseudogenes in Austinograea alayseae hydrothermal vent crabs (Crustacea: Bythograeidae): effects on DNA barcoding

      Se-Joo Kim, Kyeong Yong Lee and Se-Jong Ju

      Article first published online: 13 MAY 2013 | DOI: 10.1111/1755-0998.12119

    3. A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel

      J. M. Pujolar, M. W. Jacobsen, J. Frydenberg, T. D. Als, P. F. Larsen, G. E. Maes, L. Zane, J. B. Jian, L. Cheng and M. M. Hansen

      Article first published online: 9 MAY 2013 | DOI: 10.1111/1755-0998.12117

    4. driftsel: an R package for detecting signals of natural selection in quantitative traits

      M. Karhunen, J. Merilä, T. Leinonen, J. M. Cano and O. Ovaskainen

      Article first published online: 9 MAY 2013 | DOI: 10.1111/1755-0998.12111

    5. Advances in sex determination in bats and its utility in wind-wildlife studies

      J. M. Korstian, A. M. Hale, V. J. Bennett and D. A. Williams

      Article first published online: 6 MAY 2013 | DOI: 10.1111/1755-0998.12118

    6. SP-Designer: a user-friendly program for designing species-specific primer pairs from DNA sequence alignments

      Pierre Villard and Thibaut Malausa

      Article first published online: 2 MAY 2013 | DOI: 10.1111/1755-0998.12116

    7. New SNPs for population genetic analysis reveal possible cryptic speciation of eastern Australian sea mullet (Mugil cephalus)

      Nils C. Krück, David I. Innes and Jennifer R. Ovenden

      Article first published online: 2 MAY 2013 | DOI: 10.1111/1755-0998.12112

  2. Primer

    1. You have free access to this content
      Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

      Jochen B. W. Wolf

      Article first published online: 27 APR 2013 | DOI: 10.1111/1755-0998.12109

  3. Resource Articles

    1. Preservation of RNA and DNA from mammal samples under field conditions

      Miguel Camacho-Sanchez, Pablo Burraco, Ivan Gomez-Mestre and Jennifer A. Leonard

      Article first published online: 26 APR 2013 | DOI: 10.1111/1755-0998.12108

    2. Scoring and analysis of methylation-sensitive amplification polymorphisms for epigenetic population studies

      Benjamin Schulz, R. Lutz Eckstein and Walter Durka

      Article first published online: 26 APR 2013 | DOI: 10.1111/1755-0998.12100

  4. Opinion

    1. Of contigs and quagmires: next-generation sequencing pitfalls associated with transcriptomic studies

      J. Andrew DeWoody, Kendra C. Abts, Anna L. Fahey, Yanzhu Ji, Steven J. A. Kimble, Nicholas J. Marra, Bhagya K. Wijayawardena and Janna R. Willoughby

      Article first published online: 25 APR 2013 | DOI: 10.1111/1755-0998.12107

  5. Resource Articles

    1. You have full text access to this OnlineOpen article
      Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data

      Ram Vinay Pandey, Susanne U. Franssen, Andreas Futschik and Christian Schlötterer

      Article first published online: 25 APR 2013 | DOI: 10.1111/1755-0998.12110

    2. A simulation module in the computer program colony for sibship and parentage analysis

      Jinliang Wang

      Article first published online: 25 APR 2013 | DOI: 10.1111/1755-0998.12106

    3. Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

      L. Kermarrec, A. Franc, F. Rimet, P. Chaumeil, J. F. Humbert and A. Bouchez

      Article first published online: 17 APR 2013 | DOI: 10.1111/1755-0998.12105

    4. Evaluating DNA degradation rates in faecal pellets of the endangered pygmy rabbit

      Stephanie M. DeMay, Penny A. Becker, Chad A. Eidson, Janet L. Rachlow, Timothy R. Johnson and Lisette P. Waits

      Article first published online: 17 APR 2013 | DOI: 10.1111/1755-0998.12104

    5. Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

      Bruce E. Deagle, Austen C. Thomas, Amanda K. Shaffer, Andrew W. Trites and Simon N. Jarman

      Article first published online: 17 APR 2013 | DOI: 10.1111/1755-0998.12103

    6. EST-SSR markers from five sequenced cDNA libraries of common bean (Phaseolus vulgaris L.) comparing three bioinformatic algorithms

      Matthew W. Blair and Natalia Hurtado

      Article first published online: 17 APR 2013 | DOI: 10.1111/1755-0998.12099

    7. DNA barcoding species inventory of Microgastrinae wasps (Hymenoptera, Braconidae) from a Mexican tropical dry forest

      S. Fernández-Flores, J. L. Fernández-Triana, J. J. Martínez and A. Zaldívar-Riverón

      Article first published online: 17 APR 2013 | DOI: 10.1111/1755-0998.12102

    8. Reliable genotyping of the koala (Phascolarctos cinereus) using DNA isolated from a single faecal pellet

      Faye Wedrowicz, Mawar Karsa, Jennifer Mosse and Fiona E. Hogan

      Article first published online: 15 APR 2013 | DOI: 10.1111/1755-0998.12101

    9. DNA barcoding reveals cryptic diversity in the peanut worm Sipunculus nudus

      Te-Hua Hsu, Yue Ning, Jin-Chywan Gwo and Zhi-Nan Zeng

      Article first published online: 9 APR 2013 | DOI: 10.1111/1755-0998.12097

    10. Identification of echinoderms (Echinodermata) from an anchialine cave in Cozumel Island, Mexico, using DNA barcodes

      Guadalupe Bribiesca-Contreras, Francisco A. Solís-Marín, Alfredo Laguarda-Figueras and Alejandro Zaldívar-Riverón

      Article first published online: 29 MAR 2013 | DOI: 10.1111/1755-0998.12098

    11. The plover neurotranscriptome assembly: transcriptomic analysis in an ecological model species without a reference genome

      Hooman K. Moghadam, Peter W. Harrison, Gergely Zachar, Tamás Székely and Judith E. Mank

      Article first published online: 29 MAR 2013 | DOI: 10.1111/1755-0998.12096

    12. Analysing diversity and community structures using PCR-RFLP: a new software application

      Fabienne Flessa, Alexandra Kehl and Matthias Kohl

      Article first published online: 27 MAR 2013 | DOI: 10.1111/1755-0998.12094

    13. Detection of multiple species of human Paragonimus from Mexico using morphological data and molecular barcodes

      J. López-Caballero, A. Oceguera-Figueroa and V. León-Règagnon

      Article first published online: 26 MAR 2013 | DOI: 10.1111/1755-0998.12093

    14. DNA barcoding at riverscape scales: assessing biodiversity among fishes of the genus Cottus (Teleostei) in northern Rocky Mountain streams

      Michael K. Young, Kevin S. McKelvey, Kristine L. Pilgrim and Michael K. Schwartz

      Article first published online: 16 MAR 2013 | DOI: 10.1111/1755-0998.12091

    15. Transcriptome sequencing and microarray development for the woodrat (Neotoma spp.): custom genetic tools for exploring herbivore ecology

      J. R. Malenke, B. Milash, A. W. Miller and M. D. Dearing

      Article first published online: 16 MAR 2013 | DOI: 10.1111/1755-0998.12092

    16. Using DNA barcoding to link cystacanths and adults of the acanthocephalan Polymorphus brevis in central Mexico

      F. J. Alcántar-Escalera, M. García-Varela, E. Vázquez-Domínguez and G. Pérez-Ponce de León

      Article first published online: 9 MAR 2013 | DOI: 10.1111/1755-0998.12090

    17. Evaluating the capacity of plant DNA barcodes to discriminate species of cotton (Gossypium: Malvaceae)

      Muhammad Ashfaq, Muhammad Asif, Zahid Iqbal Anjum and Yusuf Zafar

      Article first published online: 9 MAR 2013 | DOI: 10.1111/1755-0998.12089

    18. Species delimitation in Cladonia (Ascomycota): a challenge to the DNA barcoding philosophy

      Raquel Pino-Bodas, María P. Martín, Ana R. Burgaz and H. Thorsten Lumbsch

      Article first published online: 26 FEB 2013 | DOI: 10.1111/1755-0998.12086

    19. Advancing nematode barcoding: A primer cocktail for the cytochrome c oxidase subunit I gene from vertebrate parasitic nematodes

      Sean. W. J. Prosser, Maria. G. Velarde-Aguilar, Virginia. León-Règagnon and Paul. D. N. Hebert

      Article first published online: 25 FEB 2013 | DOI: 10.1111/1755-0998.12082

    20. DNA barcoding for conservation, seed banking and ecological restoration of Acacia in the Midwest of Western Australia

      Paul G. Nevill, Mark J. Wallace, Joseph T. Miller and Siegfried L. Krauss

      Article first published online: 25 FEB 2013 | DOI: 10.1111/1755-0998.12060

    21. DNA barcoding of freshwater Rotifera in Mexico: Evidence of cryptic speciation in common rotifers

      A. E. García-Morales and M. Elías-Gutiérrez

      Article first published online: 22 FEB 2013 | DOI: 10.1111/1755-0998.12080

    22. Restricted variation in plant barcoding markers limits identification in closely related bryophyte species

      Kristian Hassel, Rossana Segreto and Torbjørn Ekrem

      Article first published online: 1 FEB 2013 | DOI: 10.1111/1755-0998.12074

    23. BLOG 2.0: a software system for character-based species classification with DNA Barcode sequences. What it does, how to use it

      Emanuel Weitschek, Robin Van Velzen, Giovanni Felici and Paola Bertolazzi

      Article first published online: 28 JAN 2013 | DOI: 10.1111/1755-0998.12073

    24. DNA barcode reference data for the Korean herpetofauna and their applications

      Tae Jin Jeong, Jumin Jun, Sanghoon Han, Hyun Tae Kim, Kyunghee Oh and Myounghai Kwak

      Article first published online: 11 JAN 2013 | DOI: 10.1111/1755-0998.12055

    25. Nonlinear projection methods for visualizing Barcode data and application on two data sets

      Madalina Olteanu, Violaine Nicolas, Brigitte Schaeffer, Christiane Denys, Alain-Didier Missoup, Jan Kennis and Catherine Larédo

      Article first published online: 3 JAN 2013 | DOI: 10.1111/1755-0998.12047

    26. BOLDMirror: a global mirror system of DNA barcode data

      D. Liu, L. Liu, G. Guo, W. Wang, Q. Sun, M. Parani and J. Ma

      Article first published online: 27 DEC 2012 | DOI: 10.1111/1755-0998.12048

  6. Opinion

    1. The seven deadly sins of DNA barcoding

      R. A. Collins and R. H. Cruickshank

      Article first published online: 27 DEC 2012 | DOI: 10.1111/1755-0998.12046

  7. Resource Articles

    1. DNA barcoding applied to ex situ tropical amphibian conservation programme reveals cryptic diversity in captive populations

      Andrew J. Crawford, Catalina Cruz, Edgardo Griffith, Heidi Ross, Roberto Ibáñez, Karen R. Lips, Amy C. Driskell, Eldredge Bermingham and Paul Crump

      Article first published online: 27 DEC 2012 | DOI: 10.1111/1755-0998.12054

    2. Improving environmental and biodiversity monitoring in the Baltic Sea using DNA barcoding of Chironomidae (Diptera)

      Y. Brodin, G. Ejdung, J. Strandberg and T. Lyrholm

      Article first published online: 24 DEC 2012 | DOI: 10.1111/1755-0998.12053

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