Molecular Ecology Resources

Cover image for Vol. 15 Issue 2

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Shawn Narum

Impact Factor: 5.626

ISI Journal Citation Reports © Ranking: 2013: 7/46 (Evolutionary Biology); 13/141 (Ecology); 46/291 (Biochemistry & Molecular Biology)

Online ISSN: 1755-0998

Associated Title(s): Molecular Ecology


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  1. Resource Articles

    1. Clumpak: a program for identifying clustering modes and packaging population structure inferences across K

      Naama M. Kopelman, Jonathan Mayzel, Mattias Jakobsson, Noah A. Rosenberg and Itay Mayrose

      Article first published online: 27 FEB 2015 | DOI: 10.1111/1755-0998.12387

    2. A combined parasitological molecular approach for noninvasive characterization of parasitic nematode communities in wild hosts

      Sarah A. Budischak, Eric P. Hoberg, Art Abrams, Anna E. Jolles and Vanessa O. Ezenwa

      Article first published online: 26 FEB 2015 | DOI: 10.1111/1755-0998.12382

    3. DNA barcoding and minibarcoding as a powerful tool for feather mite studies

      Jorge Doña, Javier Diaz-Real, Sergey Mironov, Pilar Bazaga, David Serrano and Roger Jovani

      Article first published online: 24 FEB 2015 | DOI: 10.1111/1755-0998.12384

    4. DomeTree: a canonical toolkit for mitochondrial DNA analyses in domesticated animals

      Min-Sheng Peng, Long Fan, Ni-Ni Shi, Tiao Ning, Yong-Gang Yao, Robert W. Murphy, Wen-Zhi Wang and Ya-Ping Zhang

      Article first published online: 22 FEB 2015 | DOI: 10.1111/1755-0998.12386

    5. The red coral (Corallium rubrum) transcriptome: a new resource for population genetics and local adaptation studies

      M. Pratlong, A. Haguenauer, O. Chabrol, C. Klopp, P. Pontarotti and D. Aurelle

      Article first published online: 22 FEB 2015 | DOI: 10.1111/1755-0998.12383

    6. High-throughput genotyping for species identification and diversity assessment in germplasm collections

      Annaliese S. Mason, Jing Zhang, Reece Tollenaere, Paula Vasquez Teuber, Jessica Dalton-Morgan, Liyong Hu, Guijun Yan, David Edwards, Robert Redden and Jacqueline Batley

      Article first published online: 21 FEB 2015 | DOI: 10.1111/1755-0998.12379

    7. AftrRAD: a pipeline for accurate and efficient de novo assembly of RADseq data

      Michael G. Sovic, Anthony C. Fries and H. Lisle Gibbs

      Article first published online: 16 FEB 2015 | DOI: 10.1111/1755-0998.12378

    8. Does complete plastid genome sequencing improve species discrimination and phylogenetic resolution in Araucaria?

      Markus Ruhsam, Hardeep S. Rai, Sarah Mathews, T. Gregory Ross, Sean W. Graham, Linda A. Raubeson, Wenbin Mei, Philip I. Thomas, Martin F. Gardner, Richard A. Ennos and Peter M. Hollingsworth

      Article first published online: 15 FEB 2015 | DOI: 10.1111/1755-0998.12375

    9. Correlation between genetic diversity and environmental suitability: taking uncertainty from ecological niche models into account

      José Alexandre F. Diniz-Filho, Hauanny Rodrigues, Mariana Pires De Campos Telles, Guilherme De Oliveira, Levi Carina Terribile, Thannya Nascimento Soares and João Carlos Nabout

      Article first published online: 9 FEB 2015 | DOI: 10.1111/1755-0998.12374

    10. A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation

      Isabelle Lesur, Alison Bechade, Céline Lalanne, Christophe Klopp, Céline Noirot, Jean-Charles Leplé, Antoine Kremer, Christophe Plomion and Grégoire Le Provost

      Article first published online: 30 JAN 2015 | DOI: 10.1111/1755-0998.12373

    11. Evolutionary factors affecting the cross-species utility of newly developed microsatellite markers in seabirds

      Yoshan Moodley, Juan F. Masello, Theresa L. Cole, Luciano Calderon, Gopi K. Munimanda, Marco R. Thali, Rachael Alderman, Richard J. Cuthbert, Manuel Marin, Melanie Massaro, Joan Navarro, Richard A. Phillips, Peter G. Ryan, Cristián G. Suazo, Yves Cherel, Henri Weimerskirch and Petra Quillfeldt

      Article first published online: 29 JAN 2015 | DOI: 10.1111/1755-0998.12372

    12. orchard: Paternity program for autotetraploid species

      A. Spielmann, S. A. Harris, D. H. Boshier and C. C. Vinson

      Article first published online: 23 JAN 2015 | DOI: 10.1111/1755-0998.12370

    13. You have full text access to this OnlineOpen article
      Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure

      Petri Kemppainen, Christopher G. Knight, Devojit K. Sarma, Thaung Hlaing, Anil Prakash, Yan Naung Maung Maung, Pradya Somboon, Jagadish Mahanta and Catherine Walton

      Article first published online: 21 JAN 2015 | DOI: 10.1111/1755-0998.12369

    14. You have full text access to this OnlineOpen article
      DNA barcoding largely supports 250 years of classical taxonomy: identifications for Central European bees (Hymenoptera, Apoidea partim)

      Stefan Schmidt, Christian Schmid-Egger, Jérôme Morinière, Gerhard Haszprunar and Paul D. N. Hebert

      Article first published online: 15 JAN 2015 | DOI: 10.1111/1755-0998.12363

    15. First insights into the giant panda (Ailuropoda melanoleuca) blood transcriptome: a resource for novel gene loci and immunogenetics

      Lianming Du, Wujiao Li, Zhenxin Fan, Fujun Shen, Mingyu Yang, Zili Wang, Zuoyi Jian, Rong Hou, Bisong Yue and Xiuyue Zhang

      Article first published online: 14 JAN 2015 | DOI: 10.1111/1755-0998.12367

    16. Next-generation sequencing workflow for assembly of nonmodel mitogenomes exemplified with North Pacific albatrosses (Phoebastria spp.)

      Z. T. Lounsberry, S. K. Brown, P. W. Collins, R. W. Henry, S. D. Newsome and B. N. Sacks

      Article first published online: 13 JAN 2015 | DOI: 10.1111/1755-0998.12365

    17. Detection and decay rates of prey and prey symbionts in the gut of a predator through metagenomics

      Débora P. Paula, Benjamin Linard, David A. Andow, Edison R. Sujii, Carmen S. S. Pires and Alfried P. Vogler

      Article first published online: 5 JAN 2015 | DOI: 10.1111/1755-0998.12364

    18. You have full text access to this OnlineOpen article
      One species in eight: DNA barcodes from type specimens resolve a taxonomic quagmire

      Marko Mutanen, Mari Kekkonen, Sean W. J. Prosser, Paul D. N. Hebert and Lauri Kaila

      Article first published online: 5 JAN 2015 | DOI: 10.1111/1755-0998.12361

    19. De novo assembly of the transcriptome of Acanthaster planci testes

      Michael James Stewart, Praphaporn Stewart and Jairo Rivera-Posada

      Article first published online: 25 DEC 2014 | DOI: 10.1111/1755-0998.12360

    20. New primers for DNA barcoding of digeneans and cestodes (Platyhelminthes)

      Niels Van Steenkiste, Sean A. Locke, Magalie Castelin, David J. Marcogliese and Cathryn L. Abbott

      Article first published online: 25 DEC 2014 | DOI: 10.1111/1755-0998.12358

    21. You have full text access to this OnlineOpen article
    22. Estimating pairwise relatedness between individuals with different levels of ploidy

      Kang Huang, Kermit Ritland, Songtao Guo, Derek W. Dunn, Dan Chen, Yi Ren, Xiaoguang Qi, Pei Zhang, Gang He and Baoguo Li

      Article first published online: 23 DEC 2014 | DOI: 10.1111/1755-0998.12351

    23. You have full text access to this OnlineOpen article
      A comprehensive DNA barcode database for Central European beetles with a focus on Germany: adding more than 3500 identified species to BOLD

      Lars Hendrich, Jérôme Morinière, Gerhard Haszprunar, Paul D. N. Hebert, Axel Hausmann, Frank Köhler and Michael Balke

      Article first published online: 20 DEC 2014 | DOI: 10.1111/1755-0998.12354

    24. DNA barcoding of Rhododendron (Ericaceae), the largest Chinese plant genus in biodiversity hotspots of the Himalaya–Hengduan Mountains

      Li-Jun Yan, Jie Liu, Michael Möller, Lin Zhang, Xue-Mei Zhang, De-Zhu Li and Lian-Ming Gao

      Article first published online: 18 DEC 2014 | DOI: 10.1111/1755-0998.12353

    25. Balancing sample accumulation and DNA degradation rates to optimize noninvasive genetic sampling of sympatric carnivores

      Robert C. Lonsinger, Eric M. Gese, Steven J. Dempsey, Bryan M. Kluever, Timothy R. Johnson and Lisette P. Waits

      Article first published online: 16 DEC 2014 | DOI: 10.1111/1755-0998.12356

    26. Barcoding Neotropical birds: assessing the impact of nonmonophyly in a highly diverse group

      Bárbara R. N. Chaves, Anderson V. Chaves, Augusto C. A. Nascimento, Juliana Chevitarese, Marcelo F. Vasconcelos and Fabrício R. Santos

      Article first published online: 14 DEC 2014 | DOI: 10.1111/1755-0998.12344

    27. You have full text access to this OnlineOpen article
    28. SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates

      Anders Gonçalves da Silva, William Barendse, James W. Kijas, Wes C. Barris, Sean McWilliam, Rowan J. Bunch, Russell McCullough, Blair Harrison, A. Rus Hoelzel and Phillip R. England

      Article first published online: 23 NOV 2014 | DOI: 10.1111/1755-0998.12343

    29. Optimization of the genotyping-by-sequencing strategy for population genomic analysis in conifers

      Jin Pan, Baosheng Wang, Zhi-Yong Pei, Wei Zhao, Jie Gao, Jian-Feng Mao and Xiao-Ru Wang

      Article first published online: 20 NOV 2014 | DOI: 10.1111/1755-0998.12342

    30. Towards a better understanding of Apis mellifera and Varroa destructor microbiomes: introducing ‘phyloh’ as a novel phylogenetic diversity analysis tool

      A. Sandionigi, S. Vicario, E. M. Prosdocimi, A. Galimberti, E. Ferri, A. Bruno, B. Balech, V. Mezzasalma and M. Casiraghi

      Article first published online: 19 NOV 2014 | DOI: 10.1111/1755-0998.12341

    31. MtDNA COI-COII marker and drone congregation area: An efficient method to establish and monitor honeybee (Apis mellifera L.) conservation centres

      Bénédicte Bertrand, Mohamed Alburaki, Hélène Legout, Sibyle Moulin, Florence Mougel and Lionel Garnery

      Article first published online: 12 NOV 2014 | DOI: 10.1111/1755-0998.12339

    32. Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

      Gentile F. Ficetola, Johan Pansu, Aurélie Bonin, Eric Coissac, Charline Giguet-Covex, Marta De Barba, Ludovic Gielly, Carla M. Lopes, Frédéric Boyer, François Pompanon, Gilles Rayé and Pierre Taberlet

      Article first published online: 10 NOV 2014 | DOI: 10.1111/1755-0998.12338

    33. The development and characterization of a 57K single nucleotide polymorphism array for rainbow trout

      Y. Palti, G. Gao, S. Liu, M. P. Kent, S. Lien, M. R. Miller, C. E. Rexroad III and T. Moen

      Article first published online: 24 OCT 2014 | DOI: 10.1111/1755-0998.12337

    34. Genetic identification of endangered North African ungulates using noninvasive sampling

      Teresa Luísa Silva, Raquel Godinho, Diana Castro, Teresa Abáigar, José Carlos Brito and Paulo Célio Alves

      Article first published online: 24 OCT 2014 | DOI: 10.1111/1755-0998.12335

    35. Bushmeat genetics: setting up a reference framework for the DNA typing of African forest bushmeat

      Philippe Gaubert, Flobert Njiokou, Ayodeji Olayemi, Paolo Pagani, Sylvain Dufour, Emmanuel Danquah, Mac Elikem K. Nutsuakor, Gabriel Ngua, Alain-Didier Missoup, Pablo A. Tedesco, Rémy Dernat and Agostinho Antunes

      Article first published online: 23 OCT 2014 | DOI: 10.1111/1755-0998.12334

    36. Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies

      Jonas Zimmermann, Gernot Glöckner, Regine Jahn, Neela Enke and Birgit Gemeinholzer

      Article first published online: 20 OCT 2014 | DOI: 10.1111/1755-0998.12336

    37. Molecular diversity of Germany's freshwater fishes and lampreys assessed by DNA barcoding

      Thomas Knebelsberger, Andreas R. Dunz, Dirk Neumann and Matthias F. Geiger

      Article first published online: 6 OCT 2014 | DOI: 10.1111/1755-0998.12322

    38. Genomic exploration and molecular marker development in a large and complex conifer genome using RADseq and mRNAseq

      M.-J. Karam, F. Lefèvre, M. Bou Dagher-Kharrat, S. Pinosio and G.G. Vendramin

      Article first published online: 3 OCT 2014 | DOI: 10.1111/1755-0998.12329

    39. Influence of killing method on Lepidoptera DNA barcode recovery

      Sandi Willows-Munro and M. Corrie Schoeman

      Article first published online: 1 OCT 2014 | DOI: 10.1111/1755-0998.12331

    40. You have full text access to this OnlineOpen article
    41. You have full text access to this OnlineOpen article
      Improving the genetic representation of rare taxa within complex microbial communities using DNA normalization methods

      Dragana Gagic, Paul H. Maclean, Dong Li, Graeme T. Attwood and Christina D. Moon

      Article first published online: 25 SEP 2014 | DOI: 10.1111/1755-0998.12321

    42. ITS1: a DNA barcode better than ITS2 in eukaryotes?

      Xin-Cun Wang, Chang Liu, Liang Huang, Johan Bengtsson-Palme, Haimei Chen, Jian-Hui Zhang, Dayong Cai and Jian-Qin Li

      Article first published online: 23 SEP 2014 | DOI: 10.1111/1755-0998.12325

    43. related: an R package for analysing pairwise relatedness from codominant molecular markers

      Jack Pew, Paul H. Muir, Jinliang Wang and Timothy R. Frasier

      Article first published online: 20 SEP 2014 | DOI: 10.1111/1755-0998.12323

    44. Simulating and detecting autocorrelation of molecular evolutionary rates among lineages

      Simon Y. W. Ho, Sebastián Duchêne and David Duchêne

      Article first published online: 12 SEP 2014 | DOI: 10.1111/1755-0998.12320


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