Methods in Ecology and Evolution

Cover image for Vol. 7 Issue 12

Early View (Online Version of Record published before inclusion in an issue)

Edited By: Rob Freckleton, Bob O'Hara and Jana Vamosi

Impact Factor: 6.344

ISI Journal Citation Reports © Ranking: 2015: 8/150 (Ecology)

Online ISSN: 2041-210X

Associated Title(s): Functional Ecology, Journal of Animal Ecology, Journal of Applied Ecology, Journal of Ecology

VIEW

  1. 1 - 76
  1. Corrigendum

    1. You have free access to this content
      Corrigendum

      Version of Record online: 16 JAN 2017 | DOI: 10.1111/2041-210X.12716

      This article corrects:

      Particle motion: the missing link in underwater acoustic ecology

      Vol. 7, Issue 7, 836–842, Version of Record online: 2 MAR 2016

  2. Research Articles

    1. You have free access to this content
      Tracking global change using lichen diversity: towards a global-scale ecological indicator

      Paula Matos, Linda Geiser, Amanda Hardman, Doug Glavich, Pedro Pinho, Alice Nunes, Amadeu M.V.M. Soares and Cristina Branquinho

      Version of Record online: 16 JAN 2017 | DOI: 10.1111/2041-210X.12712

  3. Corrigendum

    1. You have free access to this content
      Corrigendum

      Version of Record online: 12 JAN 2017 | DOI: 10.1111/2041-210X.12715

  4. Reviews

    1. You have full text access to this OnlineOpen article
      A new family of standardized and symmetric indices for measuring the intensity and importance of plant neighbour effects

      Rubén Díaz-Sierra, Mart Verwijmeren, Max Rietkerk, Víctor Resco de Dios and Mara Baudena

      Version of Record online: 3 JAN 2017 | DOI: 10.1111/2041-210X.12706

  5. Research Articles

    1. A new Automated Behavioural Response system to integrate playback experiments into camera trap studies

      Justin P. Suraci, Michael Clinchy, Badru Mugerwa, Michael Delsey, David W. Macdonald, Justine A. Smith, Chris C. Wilmers and Liana Y. Zanette

      Version of Record online: 3 JAN 2017 | DOI: 10.1111/2041-210X.12711

  6. Reviews

    1. Measuring and interpreting sexual selection metrics: evaluation and guidelines

      Nils Anthes, Ines K. Häderer, Nico K. Michiels and Tim Janicke

      Version of Record online: 20 DEC 2016 | DOI: 10.1111/2041-210X.12707

  7. Research Articles

    1. Revealing beliefs: using ensemble ecosystem modelling to extrapolate expert beliefs to novel ecological scenarios

      Michael Bode, Christopher M. Baker, Joe Benshemesh, Tim Burnard, Libby Rumpff, Cindy E. Hauser, José J. Lahoz-Monfort and Brendan A. Wintle

      Version of Record online: 19 DEC 2016 | DOI: 10.1111/2041-210X.12703

    2. Fourier analysis to detect phenological cycles using long-term tropical field data and simulations

      Emma R. Bush, Katharine A. Abernethy, Kathryn Jeffery, Caroline Tutin, Lee White, Edmond Dimoto, Jean-Thoussaint Dikangadissi, Alistair S. Jump and Nils Bunnefeld

      Version of Record online: 13 DEC 2016 | DOI: 10.1111/2041-210X.12704

    3. Decomposing functional diversity

      Samuel M. Scheiner, Evsey Kosman, Steven J. Presley and Michael R. Willig

      Version of Record online: 5 DEC 2016 | DOI: 10.1111/2041-210X.12696

    4. You have full text access to this OnlineOpen article
      Estimating the sustainability of towed fishing-gear impacts on seabed habitats: a simple quantitative risk assessment method applicable to data-limited fisheries

      C. Roland Pitcher, Nick Ellis, Simon Jennings, Jan G. Hiddink, Tessa Mazor, Michel J. Kaiser, Mervi I. Kangas, Robert A. McConnaughey, Ana M. Parma, Adriaan D. Rijnsdorp, Petri Suuronen, Jeremy S. Collie, Ricardo Amoroso, Kathryn M. Hughes and Ray Hilborn

      Version of Record online: 5 DEC 2016 | DOI: 10.1111/2041-210X.12705

  8. Applications

    1. You have free access to this content
      ClickPoints: an expandable toolbox for scientific image annotation and analysis

      Richard C. Gerum, Sebastian Richter, Ben Fabry and Daniel P. Zitterbart

      Version of Record online: 5 DEC 2016 | DOI: 10.1111/2041-210X.12702

  9. Research Articles

    1. Ecological forensics: using single point stable isotope values to infer seasonal schedules of animals after two diet switches

      Jeltje Jouta, Maurine W. Dietz, Jeroen Reneerkens, Theunis Piersma, Eldar Rakhimberdiev, Gunnar T. Hallgrímsson and Ido Pen

      Version of Record online: 5 DEC 2016 | DOI: 10.1111/2041-210X.12695

    2. State-dependent behavioural theory for assessing the fitness consequences of anthropogenic disturbance on capital and income breeders

      Elizabeth A. McHuron, Daniel P. Costa, Lisa Schwarz and Marc Mangel

      Version of Record online: 1 DEC 2016 | DOI: 10.1111/2041-210X.12701

    3. Potentially adaptive mitochondrial haplotypes as a tool to identify divergent nuclear loci

      Michael R. Garvin, William D. Templin, Anthony J. Gharrett, Nick DeCovich, Christine M. Kondzela, Jeffrey R. Guyon and Megan V. McPhee

      Version of Record online: 30 NOV 2016 | DOI: 10.1111/2041-210X.12698

    4. Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference

      Aaron B. A. Shafer, Claire R. Peart, Sergio Tusso, Inbar Maayan, Alan Brelsford, Christopher W. Wheat and Jochen B. W. Wolf

      Version of Record online: 28 NOV 2016 | DOI: 10.1111/2041-210X.12700

    5. A new kernel density estimator for accurate home-range and species-range area estimation

      Christen H. Fleming and Justin M. Calabrese

      Version of Record online: 28 NOV 2016 | DOI: 10.1111/2041-210X.12673

    6. Do we need demographic data to forecast plant population dynamics?

      Andrew T. Tredennick, Mevin B. Hooten and Peter B. Adler

      Version of Record online: 28 NOV 2016 | DOI: 10.1111/2041-210X.12686

    7. A permutation approach for inferring species networks from gene trees in polyploid complexes by minimising deep coalescences

      Christoph Oberprieler, Florian Wagner, Salvatore Tomasello and Kamil Konowalik

      Version of Record online: 28 NOV 2016 | DOI: 10.1111/2041-210X.12694

    8. Monitoring of plant–environment interactions by high-throughput FTIR spectroscopy of pollen

      Murat Bağcıoğlu, Achim Kohler, Stephan Seifert, Janina Kneipp and Boris Zimmermann

      Version of Record online: 28 NOV 2016 | DOI: 10.1111/2041-210X.12697

    9. A multistate dynamic site occupancy model for spatially aggregated sessile communities

      Keiichi Fukaya, J. Andrew Royle, Takehiro Okuda, Masahiro Nakaoka and Takashi Noda

      Version of Record online: 21 NOV 2016 | DOI: 10.1111/2041-210X.12690

    10. Inferring diet from dental morphology in terrestrial mammals

      Silvia Pineda-Munoz, Ignacio A. Lazagabaster, John Alroy and Alistair R. Evans

      Version of Record online: 21 NOV 2016 | DOI: 10.1111/2041-210X.12691

  10. Applications

    1. You have free access to this content
      gflow: software for modelling circuit theory-based connectivity at any scale

      Paul B. Leonard, Edward B. Duffy, Robert F. Baldwin, Brad H. McRae, Viral B. Shah and Tanmay K. Mohapatra

      Version of Record online: 18 NOV 2016 | DOI: 10.1111/2041-210X.12689

  11. Research Articles

    1. Intraspecific genetic variation in complex assemblages from mitochondrial metagenomics: comparison with DNA barcodes

      Carola Gómez-Rodríguez, Martijn J. T. N. Timmermans, Alex Crampton-Platt and Alfried P. Vogler

      Version of Record online: 17 NOV 2016 | DOI: 10.1111/2041-210X.12667

    2. Terrestrial photogrammetry: a non-destructive method for modelling irregularly shaped tropical tree trunks

      Sébastien Bauwens, Adeline Fayolle, Sylvie Gourlet-Fleury, Leopold Mianda Ndjele, Coralie Mengal and Philippe Lejeune

      Version of Record online: 17 NOV 2016 | DOI: 10.1111/2041-210X.12670

    3. A unified measure of linear and nonlinear selection on quantitative traits

      Jonathan M. Henshaw and Yoav Zemel

      Version of Record online: 17 NOV 2016 | DOI: 10.1111/2041-210X.12685

  12. Applications

    1. You have free access to this content
      deBInfer: Bayesian inference for dynamical models of biological systems in R

      Philipp H. Boersch-Supan, Sadie J. Ryan and Leah R. Johnson

      Version of Record online: 17 NOV 2016 | DOI: 10.1111/2041-210X.12679

  13. Research Articles

    1. Comparison of capture and storage methods for aqueous macrobial eDNA using an optimized extraction protocol: advantage of enclosed filter

      Johan Spens, Alice R. Evans, David Halfmaerten, Steen W. Knudsen, Mita E. Sengupta, Sarah S. T. Mak, Eva E. Sigsgaard and Micaela Hellström

      Version of Record online: 15 NOV 2016 | DOI: 10.1111/2041-210X.12683

  14. Applications

    1. You have free access to this content
      BarcodingR: an integrated r package for species identification using DNA barcodes

      Ai-bing Zhang, Meng-di Hao, Cai-qing Yang and Zhi-yong Shi

      Version of Record online: 14 NOV 2016 | DOI: 10.1111/2041-210X.12682

  15. Research Articles

    1. Cluster validity and uncertainty assessment for self-organizing map pest profile analysis

      Mariona Roigé, Melodie A. McGeoch, Cang Hui and Susan P. Worner

      Version of Record online: 14 NOV 2016 | DOI: 10.1111/2041-210X.12669

  16. Commentary

    1. You have full text access to this OnlineOpen article
      Faster estimation of Bayesian models in ecology using Hamiltonian Monte Carlo

      Cole C. Monnahan, James T. Thorson and Trevor A. Branch

      Version of Record online: 14 NOV 2016 | DOI: 10.1111/2041-210X.12681

  17. Research Articles

    1. On the notion of dispersion: from dispersion to diversity

      Hans-Rolf Gregorius and Evsey Kosman

      Version of Record online: 14 NOV 2016 | DOI: 10.1111/2041-210X.12665

  18. Reviews

    1. Two-current choice flumes for testing avoidance and preference in aquatic animals

      Fredrik Jutfelt, Josefin Sundin, Graham D. Raby, Anna-Sara Krång and Timothy D. Clark

      Version of Record online: 10 NOV 2016 | DOI: 10.1111/2041-210X.12668

  19. Applications

    1. You have free access to this content
      MatlabHTK: a simple interface for bioacoustic analyses using hidden Markov models

      Louis Ranjard, Benjamin S. Reed, Todd J. Landers, Matt J. Rayner, Megan R. Friesen, Rachel L. Sagar and Brendon J. Dunphy

      Version of Record online: 10 NOV 2016 | DOI: 10.1111/2041-210X.12688

    2. You have free access to this content
    3. You have free access to this content
    4. You have free access to this content
      The third dimension: a novel set-up for filming coelacanths in their natural environment

      Thierry Décamps, Anthony Herrel, Laurent Ballesta, Florian Holon, Thibault Rauby, Yannick Gentil, Cédric Gentil, Hugo Dutel, Régis Debruyne, Jean-Benoit Charrassin, Guillaume Eveillard, Gaël Clément and Marc Herbin

      Version of Record online: 7 NOV 2016 | DOI: 10.1111/2041-210X.12671

  20. Research Articles

    1. Protein and RNA extraction from mucosal swabs: a minimally invasive source of ecological data for studies of natural populations

      Wendy Espinosa-de Aquino, Andrea Olvera-Ramírez, Fausto Arellano-Carbajal, Humberto Lanz-Mendoza, Elena Villagrán-Herrera and Karina Acevedo-Whitehouse

      Version of Record online: 7 NOV 2016 | DOI: 10.1111/2041-210X.12680

    2. A new paradigm for biomonitoring: an example building on the Danish Stream Plant Index

      Annette Baattrup-Pedersen, Emma Göthe, Tenna Riis, Dagmar K. Andersen and Søren E. Larsen

      Version of Record online: 7 NOV 2016 | DOI: 10.1111/2041-210X.12676

    3. You have full text access to this OnlineOpen article
      Optimised scat collection protocols for dietary DNA metabarcoding in vertebrates

      Julie C. McInnes, Rachael Alderman, Bruce E. Deagle, Mary-Anne Lea, Ben Raymond and Simon N. Jarman

      Version of Record online: 7 NOV 2016 | DOI: 10.1111/2041-210X.12677

    4. You have full text access to this OnlineOpen article
      Mechanistic description of population dynamics using dynamic energy budget theory incorporated into integral projection models

      Isabel M. Smallegange, Hal Caswell, Marjolein E. M. Toorians and André M. de Roos

      Version of Record online: 7 NOV 2016 | DOI: 10.1111/2041-210X.12675

    5. Trophic cascades in 3D: network analysis reveals how apex predators structure ecosystems

      Arian D. Wallach, Anthony H. Dekker, Miguel Lurgi, Jose M. Montoya, Damien A. Fordham and Euan G. Ritchie

      Version of Record online: 27 OCT 2016 | DOI: 10.1111/2041-210X.12663

    6. ‘Residual diversity estimates’ do not correct for sampling bias in palaeodiversity data

      Manabu Sakamoto, Chris Venditti and Michael J. Benton

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/2041-210X.12666

    7. Predictive modelling of ecological patterns along linear-feature networks

      Andrew Ladle, Tal Avgar, Matthew Wheatley and Mark S. Boyce

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/2041-210X.12660

    8. Analysis of animal accelerometer data using hidden Markov models

      Vianey Leos-Barajas, Theoni Photopoulou, Roland Langrock, Toby A. Patterson, Yuuki Y. Watanabe, Megan Murgatroyd and Yannis P. Papastamatiou

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/2041-210X.12657

  21. Corrigendum

    1. You have free access to this content
      Corrigendum

      Version of Record online: 24 OCT 2016 | DOI: 10.1111/2041-210X.12672

      This article corrects:
  22. Research Articles

    1. Beauty is more than skin deep: a non-invasive protocol for in vivo anatomical study using micro-CT

      Chris Broeckhoven, Anton du Plessis, Stephan Gerhard le Roux, Pieter le Fras Nortier Mouton and Cang Hui

      Version of Record online: 20 OCT 2016 | DOI: 10.1111/2041-210X.12661

  23. Applications

    1. You have free access to this content
      Statistical Quantification of Individual Differences (SQuID): an educational and statistical tool for understanding multilevel phenotypic data in linear mixed models

      Hassen Allegue, Yimen G. Araya-Ajoy, Niels J. Dingemanse, Ned A. Dochtermann, László Z. Garamszegi, Shinichi Nakagawa, Denis Réale, Holger Schielzeth and David F. Westneat

      Version of Record online: 17 OCT 2016 | DOI: 10.1111/2041-210X.12659

  24. Research Articles

    1. EDAPHOLOG monitoring system: automatic, real-time detection of soil microarthropods

      Miklós Dombos, András Kosztolányi, Katalin Szlávecz, Csongor Gedeon, Norbert Flórián, Zita Groó, Péter Dudás and Oxána Bánszegi

      Version of Record online: 13 OCT 2016 | DOI: 10.1111/2041-210X.12662

  25. Applications

    1. You have free access to this content
  26. Research Articles

    1. Stable isotope-based location in a shelf sea setting: accuracy and precision are comparable to light-based location methods

      Clive N. Trueman, Kirsteen M. MacKenzie and Katie St John Glew

      Version of Record online: 13 OCT 2016 | DOI: 10.1111/2041-210X.12651

    2. Uncovering behavioural states from animal activity and site fidelity patterns

      Peter J. Mahoney and Julie K. Young

      Version of Record online: 10 OCT 2016 | DOI: 10.1111/2041-210X.12658

  27. Applications

    1. You have free access to this content
      Similarity in spatial utilization distributions measured by the earth mover's distance

      Bart Kranstauber, Marco Smolla and Kamran Safi

      Version of Record online: 6 OCT 2016 | DOI: 10.1111/2041-210X.12649

  28. Research Articles

    1. You have full text access to this OnlineOpen article
      Testing and recommending methods for fitting size spectra to data

      Andrew M. Edwards, James P. W. Robinson, Michael J. Plank, Julia K. Baum and Julia L. Blanchard

      Version of Record online: 3 OCT 2016 | DOI: 10.1111/2041-210X.12641

    2. The peril of proportions: robust niche indices for categorical data

      Michele E. R. Pierotti, Josep A. Martín-Fernández and Carles Barceló-Vidal

      Version of Record online: 3 OCT 2016 | DOI: 10.1111/2041-210X.12656

    3. Progressive-Change BACIPS: a flexible approach for environmental impact assessment

      Lauric Thiault, Laëtitia Kernaléguen, Craig W. Osenberg and Joachim Claudet

      Version of Record online: 3 OCT 2016 | DOI: 10.1111/2041-210X.12655

    4. How to predict plant functional types using imaging spectroscopy: linking vegetation community traits, plant functional types and spectral response

      Anna K. Schweiger, Martin Schütz, Anita C. Risch, Mathias Kneubühler, Rudolf Haller and Michael E. Schaepman

      Version of Record online: 3 OCT 2016 | DOI: 10.1111/2041-210X.12642

    5. Minimally invasive collection of adipose tissue facilitates the study of eco-physiology in small-bodied mammals

      Jeff Clerc, Theodore J. Weller, Jeffrey B. Schineller and Joseph M. Szewczak

      Version of Record online: 30 SEP 2016 | DOI: 10.1111/2041-210X.12646

  29. Applications

    1. You have free access to this content
      ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data

      Guangchuang Yu, David K. Smith, Huachen Zhu, Yi Guan and Tommy Tsan-Yuk Lam

      Version of Record online: 22 SEP 2016 | DOI: 10.1111/2041-210X.12628

  30. Research Articles

    1. You have full text access to this OnlineOpen article
    2. A novel stereo-video method to investigate fish–habitat relationships

      Danielle L. Collins, Tim J. Langlois, Todd Bond, Thomas H. Holmes, Euan S. Harvey, Rebecca Fisher and Dianne L. McLean

      Version of Record online: 20 SEP 2016 | DOI: 10.1111/2041-210X.12650

  31. Reviews

    1. Disentangling evolutionary, plastic and demographic processes underlying trait dynamics: a review of four frameworks

      Koen J. van Benthem, Marjolein Bruijning, Timothée Bonnet, Eelke Jongejans, Erik Postma and Arpat Ozgul

      Version of Record online: 20 SEP 2016 | DOI: 10.1111/2041-210X.12627

  32. Research Articles

    1. Assessing environmental pollution in birds: a new methodological approach for interpreting bioaccumulation of trace elements in feather shafts using geochemical sediment data

      Fabrizio Borghesi, Enrico Dinelli, Francesca Migani, Arnaud Béchet, Manuel Rendón-Martos, Juan A. Amat, Simone Sommer and Mark A. F. Gillingham

      Version of Record online: 19 SEP 2016 | DOI: 10.1111/2041-210X.12644

  33. Applications

    1. You have free access to this content
      warbleR: an r package to streamline analysis of animal acoustic signals

      Marcelo Araya-Salas and Grace Smith-Vidaurre

      Version of Record online: 8 SEP 2016 | DOI: 10.1111/2041-210X.12624

    2. You have free access to this content
      meteR: an r package for testing the maximum entropy theory of ecology

      Andrew J. Rominger and Cory Merow

      Version of Record online: 6 SEP 2016 | DOI: 10.1111/2041-210X.12625

  34. Research Articles

    1. Dietary studies in birds: testing a non-invasive method using digital photography in seabirds

      Davide Gaglio, Timothée R. Cook, Maëlle Connan, Peter G. Ryan and Richard B. Sherley

      Version of Record online: 1 SEP 2016 | DOI: 10.1111/2041-210X.12643

  35. Applications

    1. You have free access to this content
      Rphylopars: fast multivariate phylogenetic comparative methods for missing data and within-species variation

      Eric W. Goolsby, Jorn Bruggeman and Cécile Ané

      Version of Record online: 21 JUL 2016 | DOI: 10.1111/2041-210X.12612

    2. You have free access to this content
      CDMetaPOP: an individual-based, eco-evolutionary model for spatially explicit simulation of landscape demogenetics

      Erin L. Landguth, Andrew Bearlin, Casey C. Day and Jason Dunham

      Version of Record online: 16 JUL 2016 | DOI: 10.1111/2041-210X.12608

VIEW

  1. 1 - 76

SEARCH

SEARCH BY CITATION