Marine organisms with a pelagic stage are often assumed to display minor population structure given their extended larval development and subsequent high long-distance dispersal ability. Nonetheless, considerable population structure might still occur in species with high dispersal ability due to current oceanographic and/or historical processes. Specifically, for the wider Caribbean and Gulf of Mexico, theoretical and empirical considerations suggest that populations inhabiting each of the following areas should be genetically distinct: Panama, Belize, Southwest Florida (Tampa), and Southeast Florida (Fort Pierce). This study tests the hypothesis of significant genetic differentiation in Palaemon floridanus populations across the wider Caribbean and Gulf of Mexico. Population level comparisons were conducted using sequences of the mtDNA COI. In agreement with predictions, AMOVA and pairwise F_ST values demonstrated population differentiation among most pairs of the studied populations. Only Panama and East Florida populations were genetically similar. An isolation-with-migration population divergence model (implemented in IMA2) indicated that population divergence with incomplete lineage sorting can be invoked as the single mechanism explaining genetic dissimilarity between populations from the east and west coast of Florida. Historical demographic analyses indicated demographic expansion of P. floridanus in some localities [recent in Panama and ancient in East Florida and the wider Caribbean (entire dataset)] but constant population in other localities (in Belize and West Florida). This study rejects the idea of panmixia in marine species with high long-distance dispersal ability. Contemporary and historical processes might interact in a complex manner to determine current phylogeographic patterns.

The Regab pockmark is a large cold seep area located 10 km north of the Congo deep sea channel at about 3160 m water depth. The associated ecosystem hosts abundant fauna, dominated by chemosynthetic species such as the mussel Bathymodiolus aff. boomerang, vestimentiferan tubeworm Escarpia southwardae, and vesicomyid clams Laubiericoncha chuni and Christineconcha regab. The pockmark was visited during the West African Cold Seeps (WACS) cruise with RV Pourquoi Pas? in February 2011, and a 14,000-m² high-resolution videomosaic was constructed to map the most populated area and to describe the distribution of the dominant megafauna (mussels, tubeworms and clams). The results are compared with previous published works, which also included a videomosaic in the same area of the pockmark, based on images of the BIOZAIRE cruise in 2001. The 10-year variation of the faunal distribution is described and reveals that the visible abundance and distribution of the dominant megafaunal populations at Regab have not changed significantly, suggesting that the overall methane and sulfide fluxes that reach the faunal communities have been stable. Nevertheless, small and localized distribution changes in the clam community indicate that it is exposed to more transient fluxes than the other communities. Observations suggest that the main megafaunal aggregations at Regab are distributed around focused zones of high flux of methane-enriched fluids likely related to distinct smaller pockmark structures that compose the larger Regab pockmark. Although most results are consistent with the existing successional models for seep communities, some observations in the distribution of the Regab mussel population do not entirely fit into these models. This is likely due to the high heterogeneity of this site formed by the coalescence of several pockmarks. We hypothesize that the mussel distribution at Regab could also be controlled by the occurrence of zones of both intense methane fluxes and reduced efficiency of the anaerobic oxidation of methane possibly limiting tubeworm colonization.

In the marine environment, sessile invertebrates have developed an impressive array of mechanisms to avoid predation, bacterial exploitation, and epibiotic overgrowth. In the present study we investigated several defensive strategies adopted by six sabellids: the hard bottom species Sabella spallanzanii (Gmelin, 1791), Branchiomma luctuosum Grube, 1869, Branchiomma bairdi (McIntosh, 1885), and Sabellastarte spectabilis (Grube, 1878), and the soft bottom species Myxicola infundibulum (Renier, 1804), and Megalomma lanigera (Grube, 1846), which have different morphological characteristics and geographical distribution. We examined and compared some defensive features such as branchial crown toughness, tube structure and strength, amount of released mucus, and antibacterial lysozyme-activity in the mucus. The investigated species utilize a combination of defence and deterrence strategies that seems to be related to the colonized habitat. Tube strength was, higher in the hard bottom species compared with the soft bottom ones, where the tubes are generally buried and protected within the sediment. Branchial crown appeared stronger and resistant in hard bottom species, except for S. spallanzanii, which is the species showing the strongest tube. Sabella spallanzanii, M. infundibulum and S. spectabilis secreted high amount of mucus with high lysozyme-like activity. By contrast, B. luctuosum, B. bairdi, and M. lanigera produced low amounts of mucus exerting lower antibacterial activity.

Although copper (Cu) is an essential element for life, leaching from boat paint can cause excess environmental loading in enclosed marinas. The effects of copper contamination on benthic macrofaunal communities were examined in three San Diego Bay marinas (America's Cup, Harbor Island West and East) in Southern California, USA. The distribution of Cu concentration in sediments exhibited a clear spatial gradient, with hotspots created by the presence of boats, which in two marinas exceeded the effect range medium (ERM). Elevated sediment Cu was associated with differences in benthic assemblages, reduced species richness and enhanced dominance in America's Cup and Harbor Island West, whereas Harbor Island East did not appear to be affected. At sites without boats there were greater abundances of some amphipods such as the species Desdimelita sp., Harpinia sp., Aoroides sp., Corophium sp., Podocerus sp., bivalves such as Lyonsia californica, Musculista senhousia, Macoma sp., and polychaetes such as Diplocirrus sp. In contrast, at sites with boats, densities of Pseudopolydora paucibranchiata, Polydora nuchalis, Euchone limnicola, Exogone lourei, Tubificoides spp. were enhanced. The limited impact on Harbor Island East suggests not only lower Cu input rates and increased water flushing and mixing, but also the presence of adequate defense mechanisms that regulate availability and mitigate toxic impacts. At all three marinas, Cu in tissues of several macrobenthic species exhibited Cu bioaccumulation above levels found in the surrounding environment. The annelids Lumbrineris sp. and Tubificoides spp., and the amphipod Desdimelita sp. contained high levels of Cu, suggesting they function as Cu bioaccumulators. The spionid polychaetes Polydora nuchalis and Pseudopolydora paucibranchiata had much lower Cu concentrations than surrounding sediments, suggesting they function as Cu bioregulators. The macrobenthic invertebrates in San Diego Bay marinas that tolerate Cu pollution (e.g. P. nuchalis, P. paucibranchiata, Euchone limnicola, Typosyllis sp., Tubificoides sp.) may function as indicators of high-Cu conditions, whereas the presence of Cu-sensitive species (e.g. Podocerus sp., Aoroides sp., Harpinia sp., Macoma sp., Lyonsia californica) may indicate healthier conditions (less Cu-stressed). Parallel responses by faunas of Shelter Island Yacht Basin, also in San Diego Bay, suggest potential for development of regional Cu contamination assessment criteria, and call for functional comparisons with other marinas and coastal water bodies.

Estuarine and sheltered coastal habitats that contain physical structure are potentially important nurseries for juvenile fish. Many of these structured habitats, however, are potentially vulnerable to stressors such as elevated turbidity. Quantifying the benefits that structured habitats provide to juvenile fish may therefore be an important step in the management process. We investigated the value of structured habitat for juvenile fishes in northeastern New Zealand, using artificial seagrass units (ASUs) with varying blade density. ASUs were predominantly settled by juvenile snapper (Pagrus auratus) and spotty (Notolabrus celidotus). The density of both snapper and spotty was greatest on ASUs with the highest blade density. For snapper, a gradient in abundance was present (with higher abundance closer to the harbour mouth), suggesting either a gradient in the supply of recruits or a potential recruitment shadow effect. The size distribution of juvenile snapper (12–70 mm fork length) was very similar on both sampling trips, despite the 2-month interim period, suggesting an ontogenetic habitat shift dependent on size. The condition of juvenile snapper from ASUs with the highest blade density was also greater than the other ASU treatments. Overall, these results provide new empirical evidence that habitats with physical structure within shallow estuarine systems are important to early stage juvenile fishes such as snapper, and indicate that the location-specific context of that habitat is also likely important.

We investigated the reproductive biology of the planktonic harpacticoid copepod Euterpina acutifrons, including morphometric data, egg production rates (EPR) and viability, and weight-specific egg production. Experiments were carried out during 1 year in an inner-shelf area off Ubatuba (SE Brazil), a site seasonally influenced by bottom intrusions of the relatively cold and nutrient-rich South Atlantic Central Water (SACW). We hypothesized that E. acutifrons attain higher reproductive rates when SACW penetrates in this region. Live females were incubated individually in cell culture plates during two periods of 24 h each, under controlled temperature and light conditions. Euterpina acutifrons carried on average 16.9 ± 6.9 eggs·sac⁻¹, ranging between 10.8 ± 5.7 and 30.8 ± 7.4 eggs·sac⁻¹. Estimated EPRs ranged from 6.3 ± 3.4 to 13.6 ± 4.2 eggs·female⁻¹·day⁻¹, with mean weight-specific egg production rates of 0.06 ± 0.04 and 0.17 ± 0.08 per day. Euterpina acutifrons was not directly influenced by SACW intrusions, but body length and clutch size were positively related to temperature and chlorophyll content. Egg hatching time was clearly dependent on water temperature, as a 2 °C increase resulted in a decrease of 15 h in egg hatching time. This shows that even a small variation in temperature may considerably affect E. acutifrons population dynamics. Reproductive traits of this pelagic harpacticoid seem, therefore, to be controlled by the trade-offs between increased food supply and the metabolic demands at low temperatures associated with SACW bottom intrusions toward this coastal area.

A 275-km-long transversel Northern Adriatic profile from the mouth of the Po River (Italian Adriatic coast) to the Kvarner region (Croatian coastal island area) was investigated in three successive case studies in August 2008, 2009 and 2010. The short Po River pulses in August result in the surface advection of riverine water, nutrients and phytoplankton from the western to the eastern side of the Adriatic. This surface spreading exhibits inter-annual variability depending on the riverine discharge in the preceding period. The Po River discharge pulse in August 2010 in particular resulted in an extraordinary tongue-like advection of riverine water, nutrients, and phytoplankton towards the Eastern Adriatic coast. The phenomenon was detected using both satellite imagery and classical oceanographic measurements. In the advective water, toxic dinoflagellates were most abundant in August 2010, when the influence of the Po was greatest.

Marine algae are known to provide habitats for a wide range of marine organisms. Populations of marine epiphytal invertebrates are generalists and are less adapted to live in only one macroalga species. However, there are some examples of local adaptation and, in particular, amphipods have shown strong host specificity. Amphitholina cuniculus, an amphipod with an alga-burrowing habit, has been mainly observed in Bifurcaria bifurcata mats on the intertidal rocky shores of the southern region of the Galician coast (NW Spain; 42º11.27′ N, 8º48.25′ W). We designed a laboratory experiment conducted in June 2009 to analyse the association between the amphipod and the macroalga. In particular, we hypothesised that (i) this species would exhibit different behaviour during the day and at night, and (ii) adults of A. cuniculus would prefer B. bifurcata as habitat rather than Fucus vesiculosus or Sargassum muticum. Results supported the hypothesis that adults of A. cuniculus preferred B. bifurcata, although such preferences did not show the day/night variability predicted. This amphipod might be considered a specialist species, at least on rocky intertidal shores along the Galician coast.

Food availability is a fundamental determinant of habitat selection in animals, including shorebirds foraging on benthic invertebrates. However, the combination of dynamic habitats, patchy distributions at multiple spatial scales, and highly variable densities over time can make prey less predictable on ocean-exposed sandy shores. This can, hypothetically, cause a mismatch between prey and consumer distributions in these high-energy environments. Here we test this prediction by examining the occurrence of actively foraging pied oystercatchers (Haematopus longirostris) in relation to physical habitat attributes and macrobenthic prey assemblages on a 34 km long, high-energy beach in Eastern Australia. We incorporate two spatial dimensions: (i) adjacent feeding and non-feeding patches separated by 200 m and (ii) landscape regions with and without foraging birds separated by 2–17 km. There was no support for prey-based or habitat-based habitat choice at the smaller dimension, with birds being essentially randomly distributed at the local scale. Conversely, at the broader landscape dimension, the distribution of oystercatchers was driven by the density of their prey, but not by attributes of the physical beach environment. This scale-dependence suggests that, on open-coast beaches, landscape effects modulate how mobile predators respond to variations in prey availability.

Secondary metabolites protect many marine sponges (Phylum: Porifera) from settlement by fouling organisms. Previous studies on the subtidal demosponge Axinella verrucosa collected in the Western Mediterranean led to the isolation of compounds that inhibited the settlement of cyprids larvae of the intertidal barnacle Balanus amphitrite, and the enzyme chitinase, which plays a key role in the molting cycle of crustaceans. However, in a field survey conducted at three locations in Israel, Eastern Mediterranean Sea, we observed that A. verrucosa is fouled by the subtidal barnacle Balanus trigonus, a previously unknown association. Settlement inhibition assays using B. amphitrite with chemical extracts from Israeli A. verrucosa and Axinella polypoides, a sympatric, congeneric sponge that seems not to be fouled by B. trigonus, showed that cyprid larvae of B. amphitrite were inhibited by the extracts of both sponges from settlement at concentrations several magnitudes lower than natural volumetric extract concentration in the sponges. These results indicate that, unlike the intertidal barnacle B. amphitrite, the subtidal B. trigonus is unaffected by the compounds from A. verrucosa, stressing and underlining the importance of using suitable target organisms (i.e. from the same habitat) to test for ecologically relevant antifouling activities.

We conducted a field experiment to assess the response of phytal harpacticoids to nutrient-driven increases of epiphyte load in Posidonia oceanica meadows. First, we evaluated differences in species richness, diversity and assemblage structure of phytal harpacticoids in P. oceanica meadows with differing epiphyte loads. Secondly, we conducted a field experiment where epiphyte load was increased through an in situ addition of nutrients to the water column and evaluated the responses of the harpacticoid assemblages. We predicted that there would be changes in the harpacticoid assemblages as a result of nutrient-driven increases of epiphyte load, and that these changes would be of a larger magnitude in meadows of low epiphyte load. Our results show that the harpacticoid fauna (>500 μm) present in P. oceanica meadows in the Bay of Palma comprised taxa which are considered phytal and other less abundant ones previously described as sediment dwellers or commensal on other invertebrate species. Nutrient addition had an overall significant effect on epiphyte biomass and on harpacticoid abundance, diversity and assemblage structure, possibly as a response to the increased resources and habitat complexity provided by epiphytes. The abundance of dominant species at each location was favoured by nutrient addition and in some cases correlated with epiphytic biomass, although never strongly. This may indicate that structural complexity or diversity of the epiphytic cover might be more important than the actual epiphytic biomass for the harpacticoid species investigated. More species-specific studies are necessary to ascertain this and clarify the relationships between harpacticoids and epiphytes in seagrass meadows. To our knowledge, this is the first account of harpacticoid species associated with P. oceanica leaves and the epiphytic community they harbour in the Mediterranean Sea.

Common bottlenose dolphins, Tursiops truncatus, were surveyed in offshore gas fields off Ravenna, Italy, between Spring and Autumn, 2001–2005. These visual surveys provide the first density estimates of bottlenose dolphins in the Northwestern Adriatic Sea south of the Po River. Since no study has examined the distribution of bottlenose dolphins relative to gas platforms, when dolphins were encountered, their distance from the nearest gas platform was estimated and behaviour was assessed. Dolphins were sighted on ca. 36% of survey trips, which varied in duration from 1 to 6 h. Group size ranged from 1 to ~50 individuals, with no seasonal trend evident in the likelihood of encounter. Dolphin density was estimated to be approximately 80% higher within 750 m of gas platforms, relative to densities >750 m from platforms, although variability around the estimates was high. From a limited number of behavioural observations, slightly higher frequencies of feeding and milling behaviour were observed closer to gas platforms, whereas dolphins observed further away exhibited higher frequencies of socialising and travelling. Gas platforms are known to provide habitat for demersal fishes and act as aggregation points for pelagic fishes, and these data provide some support for the idea that bottlenose dolphins may utilise gas platforms opportunistically as feeding sites.

Studying the diversity-ecosystem function relationship in the deep sea is of primary importance in the face of biodiversity loss and for our understanding of how the deep sea functions. Results from the first study of diversity-ecosystem function relationships in the deep sea (Danovaro et al. 2008; Current Biology, 18, 1–8) are unexpected and show an exponential relationship between deep-sea nematode diversity and ecosystem function and efficiency, although this relationship appears largely restricted to relatively low diversities [ES(51) <25]. Here, we investigate the relationship between nematode diversity and several independent measures/proxies of ecosystem function (sediment community oxygen consumption, bacterial biomass, bacterial extracellular enzyme activity) and efficiency (ratio of bacterial/nematode carbon to organic C content of the sediment) on the New Zealand continental slope. Nematode diversity at our study sites was relatively high [ES(51) = 30–42], and there was no relationship between species/functional diversity and ecosystem function/efficiency after accounting for the effects of water depth and food availability. Our results are consistent with a breakdown of the exponential diversity-function relationship at high levels of diversity, which may be due to increased competition or greater functional redundancy. Future studies need to take into account as many environmental factors and as wide a range of diversities as possible to provide further insights into the diversity-ecosystem function relationship in the largest ecosystem on Earth.

During a research cruise carried out in April 2010, aimed at updating the knowledge on the biodiversity of the Santa Maria di Leuca (SML) cold-water coral province (Mediterranean Sea), a facies of the sea pen Kophobelemnon stelliferum (Muller, 1776) was found on mud-dominated bottoms. This finding represents a new species and a new habitat record from the SML coral province as well as a new bathyal facies in the whole Central Mediterranean Sea. The colonies were collected using an epi-benthic sledge, at depths between 400 and 470 m. A significant positive relationship between polyp number and colony length was detected. Density of the colonies ranged from 0.003 to 0.038 N·m⁻². Differences and affinities between Mediterranean and Atlantic occurrences of K. stelliferum are discussed.

A better understanding of biological systems can only be gained if we understand what processes are important and how they operate to determine the distribution of organisms. Coastal orientation and depth can influence environmental conditions, including the degree of water motion and availability of light, which in turn may influence the horizontal and vertical patterns of organism distribution. Here, we used a mixed-model design to examine the effects of coastal orientation and depth on the structure of benthic assemblages by comparing the abundance and distribution of macroalgae and invertebrates in shallow and deep waters on the opposing coasts of São Miguel. Generally, coastal orientation had little influence on the distribution of most taxa. In contrast, significant differences were generally associated with depth, although patterns were spatially variable at the scale of locations. This study suggests that depth, and processes operating at the scale of location, but not at the scale of the coast, have an important influence on these assemblages, and that failure to recognise such a scale of variability may hamper our ability to better understand the processes that structure these communities.

The calcarean sponge Paraleucilla magna is classified as being an invasive species on the Mediterranean Sea, where it causes economic damages to mollusc farms. On the Brazilian coast, this species is considered to be cryptogenic, and information on its ecology is scarce. The same is true for Sycettusa hastifera, another calcarean sponge with a worldwide distribution. Data on the ecology of these species could help in elucidating their potential to become a threat if they are found to be exotic species in Brazil. In the present work, we studied habitat selection, growth and mortality of early juveniles of P. magna and habitat selection of S. hastifera in a Marine Reserve from Southeastern Brazil, where these species are abundant in the benthic community. Granite plates were used for habitat selection analysis, varying in substrate inclination (vertical and horizontal) and exposure to light and hydrodynamism (exposed and sheltered). To analyse the growth and mortality rates, sponges were mapped and then measured once a week for 10 weeks. If a monitored sponge was not found in the following week, it was considered to be dead. Our results showed that, although P. magna and S. hastifera are capable of inhabiting substrates exposed to different environmental conditions, they showed habitat preferences. Growth of the juveniles of P. magna seemed not to have damaged any neighbouring invertebrates. The mortality of juveniles of this species was higher during the first 2 weeks of life but its causes could not be elucidated.

The Arabian Sea is characterized by a mid-depth layer of reduced dissolved oxygen (DO) concentration or oxygen minimum zone (OMZ -DO concentration <0.5 ml·l⁻¹) at ~150–1000 m depth. This OMZ results from the flux of labile organic matter coupled with limited intermediate depth water ventilation. Generally, benthic animals in the OMZ have morphological and physiological adaptations that maximize oxygen uptake in the limited oxygen availability. Characteristics of OMZ benthos have been described from only a few localities in the Arabian Sea. We measured the bottom water DO and studied the characteristics of infaunal macrobenthos of the Indian western continental shelf by collecting samples at 50, 100 and 200 m in depth from 7° to 22° N. The DO values observed at 200 m (0.0005–0.24 ml·l⁻¹) indicated that this area is lying within an OMZ. Five major taxa, namely Platyhelminthes, Sipunculoidea, Echiuroidea, Echinodermata and Cephalochordata were absent from the samples collected from this OMZ. In general, declines in total macrobenthic density and biomass and polychaete species richness and diversity were observed in this OMZ compared with the shallower depths above it. Community analyses of polychaetes revealed the dominance of species belonging to families Spionidae, Cirratulidae and Paraonidae in this OMZ. Low oxygen condition was more pronounced in the northern continental shelf edge (≤0.03 ml·l⁻¹), where the majority of spionids including Prionospio pinnata and cirratulids were absent; whereas amphipod, isopod and bivalve communities were not impacted.

Understanding the role that consumers play in an ecosystem requires knowledge about food selection and intake rates. However, such basic data are often difficult to obtain, particularly for marine animals that are not easy to observe. To overcome this problem, a beak movement sensor was employed on a free-ranging loggerhead turtle in a neritic foraging habitat at the Domitian littoral (SW Italy). In combination with gastrointestinal content analysis from six turtles found dead in the same area we sought to identify which beak movement patterns were associated with which prey type, and to quantify the ingestion of the various prey types. Brachyuran crabs (100% occurrence), in particular Liocarcinus vernalis, and small molluscs (66% occurrence) were found most frequently in the stomach and intestine of the turtles. Beak movements revealed average ingestion rates of (mean ± SE) 0.27 ± 0.13 food items per minute and that feeding occurred predominantly during dives >4 m and during early morning and evening. Interestingly, the time spent feeding amounted to only 2.2% of the total observation time, whereas feeding-associated dives added up to just above 10% of the total time. We thus established that loggerhead turtles in this area are specialised on brachyuran crabs, on which they prey with high success during the short time dedicated to foraging. This information strengthens our knowledge about turtle–prey and turtle–habitat interactions, which are essential data to delineate the role that turtles play in this and similar marine ecosystems. Moreover, since the same area is also intensively used by the regional bottom trawl fishery, our results have important conservation implications, because they clearly show the time of day and water depths for which fishing activity should be regulated to reduce the number of turtles that are currently being incidentally caught in this area.

The use of environmental data in biogeographic studies of the deep sea is providing greater insight into the processes underlying large-scale patterns of diversity. Recent surveys of Australia's western continental margin (~100–1100 m) provide systematic sampling of invertebrate megafauna along a gradient of 22° of latitude (13–35° S). Diversity patterns of decapod crustaceans were examined and we investigated the relative importance of environmental and spatial predictor variables on both species richness (alpha diversity) and species turnover. Distance-based linear models (DistLM) indicated a suite of variables were important in predicting species turnover, of which temperature and oxygen were the most influential. These reflected the oceanographic features that dominate distinct depth bathomes along the slope. The numbers of species within samples were highly variable; a small but significant increase in diversity towards the tropics was evident. Replicated sampling along the margin at ~100 m and ~400 m provided an opportunity to compare latitudinal patterns of diversity at different depths. On the shallow upper slope (~400 m) temperature was disassociated from latitude and the latter proved to be the best predictor of sample species richness. The predictive power of latitude over other variables indicates that proximity to the highly diverse Indo-West Pacific (IWP) may be important, especially considering that almost 40% of species in this study had a wide IWP distribution. In the management of Australia's marine environments, geomorphic surrogates have been emphasised when defining areas for protection. We found sea-floor characteristics were relatively less important in predicting richness or community composition.

Mangroves are highly productive environments that play important ecological and socioeconomic roles; however, they have been impacted to different degrees in most countries worldwide. The knowledge of which organisms inhabit this environment and their ecological interactions is the first step towards its conservation. The natural variability of environmental factors in mangroves provides numerous niches available to different species. Meiofauna have patchy patterns of distribution that are related to the availability of resources. Hence, meiofauna are expected to present a high diversity of different taxa occupying the different microhabitats offered by mangroves. This work aims to test the hypothesis that the assemblage structure of Nematoda varies significantly among mangrove microhabitats and to contribute knowledge on the meiofauna diversity in mangrove environments. This work was carried out in a mangrove region at Pernambuco state, Northeastern Brazil. Qualitative samples were collected in nine microhabitats which show different characteristics mainly in terms of presence of vegetation or another organism and sediment grain size. Univariate and multivariate analysis were applied to Nematoda genera abundance data. Our results demonstrate the existence of significant differences among microhabitats regarding nematode assemblage structure corroborating the hypothesis. Different Nematoda assemblages are present in at least seven microhabitats. These assemblages are composed of nematode genera with different trophic and morphological features, demonstrating a strong relationship between morphological diversity and ecological plasticity. Furthermore, this study also demonstrates the importance of the conservation of this ecosystem and its attributes.

Recent studies suggest a future increase in sponge bioerosion as an outcome of coral reef decline around the world. However, the factors that shape boring sponge assemblages in coral reefs are not currently well understood. This work presents the results of a 17-month assessment of the presence and species richness of boring sponges in fragments collected from living corals, dead coral reef matrix and coral rubble from Punta de Mita and Isabel Island, two coral reefs from the central coast of the Mexican Pacific Ocean. Both localities have a high cover of dead corals generated by past El Niño Southern Oscillation events, but Punta de Mita was also highly exposed to anthropogenic impacts. Additionally, environmental factors (water transparency, water movement, temperature, sediment deposition, SST, and chlorophyll concentration) were assessed to test the hypothesis that environmental conditions which are potentially harmful for corals can enhance sponge bioerosion. Isabel Island and Punta de Mita showed a similar species richness (13 and 11 species, respectively) but boring sponge presence in both live and dead corals was higher at Isabel Island (57.6%) than at Punta de Mita (35.7%). The same result was obtained when each type of substrate was analysed separately: dead coral reef matrix (81.3% versus 55.5%), coral rubble (47.7% versus 20.0%) and living corals (43.7% versus 31.7%). A principal components analysis showed a higher environmental heterogeneity at Punta de Mita, as well as important environmental differences between Punta de Mita and Isabel Island, due to sediment deposition (2.0 versus 0.2 kg·m⁻²·d⁻¹) and water movement (24.5% versus 20.5% plaster dissolution day⁻¹), that were also negatively correlated with boring sponge presence (r = −0.7). By analysing the boring sponge assemblage, we found that environmental settings, together with habitat availability (i.e., dead coral substrate) differentiated assemblage structure at both localities. Major structural differences were largely due to species such as Cliona vermifera, Cliona tropicalis and Aka cryptica. In conclusion, factors such as habitat availability favored the presence of boring sponges but some environmental factors such as abrasion resulting from moving sediment acted restrictively, and exerted a major role in structuring boring sponge assemblages in the Mexican Pacific.

The intertidal zone of tropical islands is particularly poorly known. In contrast, temperate locations such as California's Monterey Bay are fairly well studied. However, even in these locations, studies have tended to focus on a few species or locations. Here we present the results of the first broadscale surveys of invertebrate, fish and algal species richness from a tropical island, Oahu, Hawaii, and a temperate mainland coast, Central California. Data were gathered through surveys of 10 sites in the early 1970s and again in the mid-1990s in San Mateo and Santa Cruz counties, California, and of nine sites in 2001–2005 on Oahu. Surveys were conducted in a similar manner allowing for a comparison between Oahu and Central California and, for California, a comparison between time periods 24 years apart. We report a previously undocumented richness of intertidal species in both locations: 516 for Oahu and 801 for Central California. Surprisingly, when differences in search efforts are controlled, overall (alpha) diversity appears to be similar between locations, although site level (beta) diversity is much higher in California. Species richness in California generally increased along a wave exposure gradient and distance from an urban area. Much higher numbers of both invasive and endemic species were found on Oahu. In California, more invertebrate species were found in the 1990s, likely due to an improvement in taxonomic resources since the 1970s, and species composition was different in the two surveys due to the high incidence of rare species. Although some southern species increased in number between the two time periods and some northern species decreased, we detected little evidence of change favoring southern or northern species. These results are in line with recent findings that water temperatures in the Monterey Bay have been in a cooling trend since the 1980s, in contrast to many locations elsewhere in the world.

Despite the high number of species and ecological diversity of pandalid shrimps, there has been no previous attempt to resolve evolutionary relationships of several genera using molecular tools. Although mitochondrial DNA cytochrome oxidase I (COI) is widely used in barcoding studies to delimit species boundaries, additional insights into phylogenetic affinities can be obtained, especially when used in combination with data from additional genes. The knowledge of molecular diversity is essential to understand phylogenetic relationships and will help systematic clarifications. Based on partial fragments of the 16S and COI genes, we have focused specifically on addressing the systematic relationships of the economically and ecologically important shrimp genus Plesionika within a framework of five genera from within the Pandalidae. Our results showed that species within Plesionika are substantially divergent when compared with other genera, exhibiting the highest average nucleotide divergence, with 0.1123 and 0.0846 in COI and 16S genes, respectively. In addition, sequence divergence was found to vary greatly within the genus Plesionika (COI/16S): 0.0247/0.0016 between Plesionika antigai and Plesionika heterocarpus and 0.1616/0.098 between Plesionika heterocarpus and Plesionika edwardsii. We did not find amino acid sequence divergence between P. heterocarpus and P. antigai compared with P. heterocarpus and P. edwardsii (8.10%, K2P distance). Three species of Plesionika (P. antigai, P. heterocarpus and Plesionika scopifera) appear well separated from other Plesionika species in both maximum likelihood and Bayesian analyses. The present study confirms the utility of COI over 16S as a genetic marker to resolve relationships between different species of Plesionika from the Northeast Atlantic and Mediterranean Sea, in addition to species delimitation. The findings highlight the need to further review paraphyly within Plesionika in an attempt to recognize a concordance in the evolutionary history of Plesionika with major ecological and geological events.

We investigated the effect of interannual variation on the biodiversity and distribution of decapod larvae at Saint Paul's Rocks, an isolated small group of equatorial islands linked to the Atlantic Mid-Ocean ridge. Zooplankton samples were collected between 2003 and 2005 from a range of different environments off the archipelago. Horizontal surface hauls were conducted in the inlet and at three increasing distances from the archipelago, both in the morning and at night, using a 200-μm mesh net. Decapod larvae collected included 11 species and 37 individual taxa. Seven of them have not previously been recorded in the area. Samples taken at the shortest distance from the archipelago exhibited a significantly greater abundance than samples taken further away. No significant differences were detected between months in terms of decapod larvae abundance in the inlet. However, in the open ocean at night, the mean abundance was much higher in May and July. Decapod larvae abundance was much higher at night for both the open ocean and the inlet. Brachyuran and caridean larvae exhibited the greatest abundance and frequency in the inlet, mainly represented by the first-stage larvae of: Grapsus grapsus, Plagusia depressa, Platypodiella spectabilis and Alpheidae. In contrast, Sergestidae holopelagic shrimps were the most abundant and the most frequent larvae in the surface waters of the open ocean. The composition, abundance and distribution of decapod larvae were very similar during the 2 years sampled. Species accumulation curves indicate that even greater diversity exists, demonstrating that long-term research is important for acquiring accurate knowledge about the biodiversity of dynamic ecosystems such as those at Saint Paul's Rocks.

We determined that growth differences among coral fragments transplanted for restoration were influenced by both source population and environmental factors. In two common garden experiments, storm-generated fragments of Acropora palmata were transplanted from two source populations in the British Virgin Islands to a restoration site (a ‘common garden’) that lacked A. palmata. In the first experiment, colonies from different sources grew at different rates in the first year after transplanting, suggesting either genetic differences among source populations or enduring acclimation to conditions at the source site. No differences in growth among source populations were detected in the second common garden experiment. To isolate environmental effects on growth, we subdivided fragments from three source populations to create genetically identical pieces that were attached separately at both source and restoration sites. Genetically identical pieces from all source populations grew slightly faster at their source than at the restoration site, implying a subtle home-site advantage. Overall, our results suggest that matching environmental conditions at source and restoration sites may increase the success of restoration projects.

This study applied the loss after combustion (LAC) method and the acid decalcification (ADC) method to quantify different components of an excavating sponge. Samples of dried coral skeleton of Favia sp. invaded by the Indo-Pacific excavating sponge Cliona orientalis Thiele, 1900 were used. The sponge tissue penetrated the 12-mm-thick samples to approximately 10 mm. The average proportional weight of organic matter, siliceous spicules, calcareous substrate and salts in the entire samples was found to be respectively 2.5%, 4.4%, 90.5% and 2.5% of dry weight applying the LAC method, and 2.9%, 5.9%, 89.0% and 2.3% of dry weight applying the ADC method. Respective volumetric proportions of the organic matter, spicules, substrate and salts were then calculated to be 6.4%, 5.5%, 85.2% and 3.0% of volume with the LAC method, and 7.4%, 7.2%, 82.7% and 2.7% of volume with the ADC method. The LAC method showed low variability of data and is simple and fast and therefore is recommended. The ADC method generated very similar results to the LAC method. However, due to the handling involved in the ADC method, more than half of the spicules may be lost and the method is therefore not recommended unless careful data corrections are considered. In addition, the buoyant weight method was used to quantify actual substrate weight in the fresh sponge-substrate samples. This method was found to be at least 97% effective, revealing that buoyant weights can potentially be used to quantify bioerosion rates of excavating sponges. To our knowledge, this is the first study to systemically quantify organic and inorganic components of an excavating sponge and its calcareous substrate, providing improved standard methods for future studies.

Lately, across-shore zonation has been found to be more important in structuring the nematode community of a tropical macrotidal sandy beach than microhabitat heterogeneity. To evaluate whether this zonation pattern applies to a temperate beach, a macrotidal ridge-and-runnels sandy beach in the North Sea was studied. We investigated whether a similar zonation occurs in sandbar and runnel microhabitats, and whether the runnels harbour a different community from the subtidal. Our results indicate that nematode communities from runnel and sandbar habitats are significantly different. In addition, horizontal zonation patterns for nematode communities differ between both habitats. Nematode assemblages from sandbars are divided to lower, middle and upper beach while upper and middle runnels cluster together. The subtidal and upper runnels showed dissimilar nematode assemblages, although runnels showed the same dominant species (Daptonema normandicum), which increases its abundance towards the upper runnels. This study illustrates the importance of microhabitat heterogeneity, which resulted in different zonation patterns across the sandy beach examined. The divergent zonation between sandbars and runnels in the macrotidal temperate sandy beach, compared with the pattern observed for a subtropical sandy beach with similar morphodynamics, indicates that generalizations about nematode distribution patterns should be made with caution.

To understand the role of phytoplankton resting cells in the outbreak of algal blooms, particularly harmful algal blooms, surface sediments were collected monthly from April 2007 to March 2008 from two bays near the international ports in the Southern Chinese coastal waters. Sieved sediments were incubated for 20 and 40 days, and germinated vegetative cells were observed. Altogether, 97 taxa were recorded, of which 50 were diatoms and 35 dinoflagellates. Vegetative cells of cyanobacteria, chlorophytes, dictyophytes, euglenophytes, haptophytes, and raphidophytes were also observed. Centric diatoms such as Chaetoceros, Melosira, Skeletonema, and Thalassiosira dominated. Scrippsiella, Gymnodinium, and Alexandrium were common dinoflagellate taxa. Diatom spores germinated in samples from all seasons but were abundant in the autumn and winter samples. Low numbers of dinoflagellate cells germinated in the winter samples. The nanophytoplankton taxa, Gymnodinium corii and Chrysochromulina sp., which have not been recorded in the previous phytoplankton surveys, were abundant, suggesting either their new appearance in the water column or perhaps that they were overlooked in routine phytoplankton monitoring due to their small sizes. Vegetative cells of harmful or potentially harmful taxa were germinated, and some of them such as Amphidinium, Gambierdiscus, Ostreopsis, and Coolia have not previously been reported in the study area. Based on the results of the incubation of sediments from the two bays near the international ports, it is suggested that international shipping increases the risk of the introduction of new phytoplankton species and thus promotes the incidence of harmful algal blooms.

The vertical distribution of macrobenthic fauna, heavy metals, and other physico-chemical and biological characteristics of the sediments were studied in three sediment layers (0–7, 8–14, 15–21 cm) at seven stations in the Ubatuba region, north coast of São Paulo State, Brazil at several temporal and spatial scales. Six stations were located in the inner bay near the riverine run-off, and one was outside the bay, distant from the riverine influence. The samples were collected four times in 1 year, on a seasonal basis. Sediments were basis comprised predominantly of very fine sand and the vertical distribution of grain size was uniform to a depth of 21 cm in all stations. Higher values of total organic matter, organic carbon, sulphur, heavy metals and phaeopigments were recorded at the inner Ubatuba Bay stations, probably due to the riverine influence. C/N ratios indicated a mixed origin of organic matter with a major contribution of terrestrial material in the inner stations. The vertical distribution of heavy metals showed a slight decline with sediment depth in the inner stations, indicating the present contribution. Most of the macrofauna was found at the surface sediment layer. Biological data showed that in the inner stations of Ubatuba Bay, which are under the influence of urban sewage and are moderately polluted, the fauna was distributed more superficially within the substrate than in St. 7, which is located in the external portion of the bay distant from sewage inputs. The environmental quality of the sites studied varied little throughout the year, at least in relation to the variables considered here. Temporal variation in the vertical distribution of benthic fauna was not evident in the four sampling surveys analysed. Only minor changes in the vertical distribution of the total fauna were detected in the seasonal scale, with the organisms located less deep within the sediment column in summer, indicating some influence of the tourism impact and/or rainy season.

Rhodopirellula baltica is a ubiquitous Planctomycetes organism isolated from marine environments worldwide. Multilocus sequence analysis (MLSA) has been the only method used to assess the diversity of R. baltica organisms. Here, we developed multispacer sequence typing (MST) genotyping and applied it to four R. baltica isolates from the French Mediterranean Sea and R. baltica DSM10527^T type strain. While MLSA yielded interpretable sequences for two of nine genes in three R. baltica isolates, MST based on sequencing two intergenic spacers yielded an unambiguous, strain-specific profile for each one of the four R. baltica isolates under investigation. We propose that MST could be used as an alternative R. baltica genotyping method to assess the diversity of these Planctomycetes organisms.