Volume 10, Issue 1
Research Article

Multiway calibration. Multilinear PLS

Rasmus Bro

Corresponding Author

Food Technology, Royal Veterinary and Agricultural University, Thorvaldsensvej 40, 6, ii, DK‐1871 Frederiksberg C, Denmark

Food Technology, Royal Veterinary and Agricultural University, Thorvaldsensvej 40, 6, ii, DK‐1871 Frederiksberg C, DenmarkSearch for more papers by this author

Abstract

A new multiway regression method called N‐way partial least squares (N‐PLS) is presented. The emphasis is on the three‐way PLS version (tri‐PLS), but it is shown how to extend the algorithm to higher orders. The developed algorithm is superior to unfolding methods, primarily owing to a stabilization of the decomposition. This stabilization potentially gives increased interpretability and better predictions. The algorithm is fast compared with e.g. PARAFAC, because it consists of solving eigenvalue problems.

An example of the developed algorithm taken from the sugar industry is shown and compared with unfold‐PLS. Fluorescence excitation—emission matrices (EEMs) are measured on white sugar solutions and used to predict the ash content of the sugar. The predictions are comparable by the two methods, but there is a clear difference in the interpretability of the two solutions. Also shown is a simulated example of EEMs with very noisy measurements and a low relative signal from the analyte of interest. The predictions from unfold‐PLS are almost twice as bad as from tri‐PLS despite the large number of samples (125) used in the calibration.

The algorithms are available from World Wide Web: hhtp:\\newton.foodsci.kvl.dk\foodtech.

Number of times cited according to CrossRef: 457

  • Fluorescence spectroscopy and chemometrics for simultaneous monitoring of cell concentration, chlorophyll and fatty acids in Nannochloropsis oceanica, Scientific Reports, 10.1038/s41598-020-64628-7, 10, 1, (2020).
  • Three-way analysis of pH-UV absorbance dataset for the determination of paracetamol and its pKa value in presence of excipients, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 10.1016/j.saa.2020.118049, (118049), (2020).
  • Mathematical chromatography deciphers the molecular fingerprints of dissolved organic matter, The Analyst, 10.1039/C9AN02176K, (2020).
  • Dynamic Latent Variable Regression for Inferential Sensor Modeling and Monitoring, Computers & Chemical Engineering, 10.1016/j.compchemeng.2020.106809, (106809), (2020).
  • Advanced data handling in comprehensive two-dimensional gas chromatography, Basic Multidimensional Gas Chromatography, 10.1016/B978-0-12-813745-1.00007-6, (229-268), (2020).
  • Simultaneous measurement of phenols by three-way fluorescence spectroscopy: A comparison of N-PLS/RBL, U-PLS/RBL and PARAFAC, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 10.1016/j.saa.2020.118511, (118511), (2020).
  • Second-order calibration in combination with fluorescence fibre-optic data modelling as a novel approach for monitoring the maturation stage of plums, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2020.103980, 199, (103980), (2020).
  • Simple and fast spectrophotometric method based on chemometrics for the measurement of multicomponent adsorption kinetics, Journal of Chemometrics, 10.1002/cem.3249, 34, 8, (2020).
  • undefined, 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 10.1109/EMBC44109.2020.9176115, (394-397), (2020).
  • PLS and N-PLS based MIA-QSPR modeling of the photodegradation half-lives for polychlorinated biphenyl congeners, RSC Advances, 10.1039/D0RA05231K, 10, 56, (33753-33761), (2020).
  • Recent advances in chemical multi-way calibration with second-order or higher-order advantages: Multilinear models, algorithms, related issues and applications, TrAC Trends in Analytical Chemistry, 10.1016/j.trac.2020.115954, (115954), (2020).
  • Development of Gas Chromatographic Pattern Recognition and Classification Tools for Compliance and Forensic Analyses of Fuels: A Review, Analytica Chimica Acta, 10.1016/j.aca.2020.07.027, (2020).
  • Novel Three-Dimensional Resolution of a pH and Ultraviolet-Visible Absorption Spectral Dataset for the Determination of Desloratadine in a Pharmaceutical Product and Its Acid Dissociation Constant, Analytical Letters, 10.1080/00032719.2020.1721002, (1-17), (2020).
  • Multiway generalized canonical correlation analysis, Biostatistics, 10.1093/biostatistics/kxaa010, (2020).
  • Application of Chemometrics in Biosensing: A Brief Review, Biosensors, 10.3390/bios10080100, 10, 8, (100), (2020).
  • Multiple Tensor-on-Tensor Regression: An Approach for Modeling Processes With Heterogeneous Sources of Data, Technometrics, 10.1080/00401706.2019.1708463, (1-23), (2020).
  • Rapid identification and quantification of cheaper vegetable oil adulteration in camellia oil by using excitation-emission matrix fluorescence spectroscopy combined with chemometrics, Food Chemistry, 10.1016/j.foodchem.2019.04.109, (2019).
  • Sparse N-way Partial Least Squares by L1-penalization, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2019.01.004, (2019).
  • undefined, , 10.1063/1.5091379, (170014), (2019).
  • Fluorescence spectroscopy and imaging instruments for food quality evaluation, Evaluation Technologies for Food Quality, 10.1016/B978-0-12-814217-2.00019-6, (491-533), (2019).
  • The Sequential and Orthogonalized PLS Regression for Multiblock Regression, Data Fusion Methodology and Applications, 10.1016/B978-0-444-63984-4.00006-5, (157-177), (2019).
  • Pattern recognition in voltammetric signals by ASD trilinear decomposition, Talanta, 10.1016/j.talanta.2019.05.043, (2019).
  • Bilinear and trilinear algorithms utilizing full and selected variables for resolution and quantitation of four components with overlapped spectral signals in bulk and syrup dosage form, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 10.1016/j.saa.2019.117219, (117219), (2019).
  • Analysis of Metabolomics Data—A Chemometrics Perspective, Reference Module in Chemistry, Molecular Sciences and Chemical Engineering, 10.1016/B978-0-12-409547-2.14593-7, (2019).
  • Excitation-Emission fluorescence as a tool to assess the presence of grape-must caramel in PDO wine vinegars, Food Chemistry, 10.1016/j.foodchem.2019.02.008, (2019).
  • A Class of Multidimensional NIPALS Algorithms for Quaternion and Tensor Partial Least Squares Regression, Signal Processing, 10.1016/j.sigpro.2019.03.002, (2019).
  • Multi-Block and Three-Way Data Analysis, Reference Module in Chemistry, Molecular Sciences and Chemical Engineering, 10.1016/B978-0-12-409547-2.14717-1, (2019).
  • Robust latent-variable interpretation of in vivo regression models by nested resampling, Scientific Reports, 10.1038/s41598-019-55796-2, 9, 1, (2019).
  • Electrochemical SERS and SOERS in a single experiment: A new methodology for quantitative analysis, Electrochimica Acta, 10.1016/j.electacta.2019.135561, (135561), (2019).
  • Fluorescence Spectroscopy and Chemometrics in Analysis of Beverages, Quality Control in the Beverage Industry, 10.1016/B978-0-12-816681-9.00005-9, (161-203), (2019).
  • Sparse Methods, Reference Module in Chemistry, Molecular Sciences and Chemical Engineering, 10.1016/B978-0-12-409547-2.14592-5, (2019).
  • Authentication of PDO saffron of L’Aquila (Crocus sativus L.) by HPLC-DAD coupled with a discriminant multi-way approach, Food Control, 10.1016/j.foodcont.2019.107022, (107022), (2019).
  • undefined, IGARSS 2019 - 2019 IEEE International Geoscience and Remote Sensing Symposium, 10.1109/IGARSS.2019.8898214, (8505-8508), (2019).
  • Spectrochromatographic determination of dorzolamide hydrochloride and timolol maleate in an ophthalmic solution using three-way analysis methods, Talanta, 10.1016/j.talanta.2018.08.082, 191, (248-256), (2019).
  • Comparison of Bi- and Tri-Linear PLS Models for Variable Selection in Metabolomic Time-Series Experiments, Metabolites, 10.3390/metabo9050092, 9, 5, (92), (2019).
  • White matter during concussion recovery: Comparing diffusion tensor imaging (DTI) and neurite orientation dispersion and density imaging (NODDI), Human Brain Mapping, 10.1002/hbm.24500, 40, 6, (1908-1918), (2018).
  • Finding the optimal time resolution for batch-end quality prediction: MRQP – A framework for multi-resolution quality prediction, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2017.12.006, 172, (150-158), (2018).
  • Multiomics Data Integration in Time Series Experiments, Data Analysis for Omic Sciences: Methods and Applications, 10.1016/bs.coac.2018.06.005, (505-532), (2018).
  • MATLAB in electrochemistry: A review, Talanta, 10.1016/j.talanta.2018.10.041, (2018).
  • Chemometrics advances on the challenges of the gas chromatography–mass spectrometry metabolomics data: a review, Journal of the Iranian Chemical Society, 10.1007/s13738-018-1461-5, 15, 12, (2733-2745), (2018).
  • Sparse N-way partial least squares with R package sNPLS, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2018.06.005, 179, (54-63), (2018).
  • Comprehensive and multidimensional tools for crude oil property prediction and petrochemical industry refinery inferences, Fuel, 10.1016/j.fuel.2018.01.109, 223, (188-197), (2018).
  • Higher-order partial least squares for predicting gene expression levels from chromatin states, BMC Bioinformatics, 10.1186/s12859-018-2100-y, 19, S5, (2018).
  • Dynamic elementary mode modelling of non-steady state flux data, BMC Systems Biology, 10.1186/s12918-018-0589-3, 12, 1, (2018).
  • Multivariate analysis of organic acids in fermented food from reversed-phase high-performance liquid chromatography data, Talanta, 10.1016/j.talanta.2017.09.005, 178, (15-23), (2018).
  • Random initialisation of the excitation-emission matrix fluorescence spectral variables in constraint fashion for subsequent multivariate curve resolution alternating least square analysis on a peculiarly designed calibration set: Simultaneous sensing of nine polycyclic aromatic hydrocarbons in water samples, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 10.1016/j.saa.2018.06.067, 204, (354-361), (2018).
  • Three-Way Generalized Structured Component Analysis, Quantitative Psychology, 10.1007/978-3-319-77249-3_17, (195-209), (2018).
  • Connectomic markers of symptom severity in sport-related concussion: Whole-brain analysis of resting-state fMRI, NeuroImage: Clinical, 10.1016/j.nicl.2018.02.011, 18, (518-526), (2018).
  • Excitation‐Emission‐Matrix Fluorescence Spectroscopy of Soil Water Extracts to Predict Nitrogen Mineralization Rates, Soil Science Society of America Journal, 10.2136/sssaj2017.06.0188, 82, 1, (126-135), (2018).
  • Trajectory‐based phase partition and multiphase multilinear models for monitoring and quality prediction of multiphase batch processes, Journal of Chemometrics, 10.1002/cem.3013, 32, 7, (2018).
  • Analysis of profiles for monitoring of modern ship performance via partial least squares methods, Quality and Reliability Engineering International, 10.1002/qre.2336, 34, 7, (1424-1436), (2018).
  • Hybrid semiparametric systems for quantitative sequence-activity modeling of synthetic biological parts, Synthetic Biology, 10.1093/synbio/ysy010, 3, 1, (2018).
  • Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach, Frontiers in Genetics, 10.3389/fgene.2018.00578, 9, (2018).
  • Assessing the capability of Fourier transform infrared spectroscopy in tandem with chemometric analysis for predicting poultry meat spoilage, PeerJ, 10.7717/peerj.5376, 6, (e5376), (2018).
  • Current challenges in second‐order calibration of hyphenated chromatographic data for analysis of highly complex samples, Journal of Chemometrics, 10.1002/cem.2976, 32, 12, (2017).
  • Detection of total viable count in spiced beef using hyperspectral imaging combined with wavelet transform and multiway partial least squares algorithm, Journal of Food Safety, 10.1111/jfs.12390, 38, 1, (2017).
  • Reference-free spectroscopic determination of fat and protein in milk in the visible and near infrared region below 1000 nm using spatially resolved diffuse reflectance fiber probe, Talanta, 10.1016/j.talanta.2017.02.047, 167, (563-572), (2017).
  • Multiway analysis methods applied to the fluorescence excitation-emission dataset for the simultaneous quantification of valsartan and amlodipine in tablets, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 10.1016/j.saa.2017.04.081, 184, (255-261), (2017).
  • Extension of SO-PLS to multi-way arrays: SO-N-PLS, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2017.03.002, 164, (113-126), (2017).
  • Applications of Chemometrics‐Assisted Voltammetric Analysis, Applications of the Voltammetry, 10.5772/65154, (2017).
  • Development of a second-order standard addition fluorescence method for the direct determination of riboflavin in human urine samples without previous clean up and separation steps, Microchemical Journal, 10.1016/j.microc.2017.02.033, 133, (60-66), (2017).
  • Kernel-Based NPLS for Continuous Trajectory Decoding from ECoG Data for BCI Applications, Latent Variable Analysis and Signal Separation, 10.1007/978-3-319-53547-0_39, (417-426), (2017).
  • Non-invasive soil moisture sensing based on open-ended waveguide and multivariate analysis, Sensors and Actuators A: Physical, 10.1016/j.sna.2017.08.034, 265, (236-245), (2017).
  • Weighted partial least squares based on the error and variance of the recovery rate in calibration set, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 10.1016/j.saa.2017.04.029, 183, (138-143), (2017).
  • Fluorescent fingerprints of edible oils and biodiesel by means total synchronous fluorescence and Tucker3 modeling, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 10.1016/j.saa.2016.12.027, 175, (185-190), (2017).
  • Recursive Exponentially Weighted N-way Partial Least Squares Regression with Recursive-Validation of Hyper-Parameters in Brain-Computer Interface Applications, Scientific Reports, 10.1038/s41598-017-16579-9, 7, 1, (2017).
  • Applications and challenges of multi-way calibration in electrochemical analysis, TrAC Trends in Analytical Chemistry, 10.1016/j.trac.2016.11.002, 87, (32-48), (2017).
  • Third order chromatographic-excitation–emission fluorescence data: Advances, challenges and prospects in analytical applications, TrAC Trends in Analytical Chemistry, 10.1016/j.trac.2017.05.011, 93, (119-133), (2017).
  • Online Anomaly Detection in Big Data: The First Line of Defense Against Intruders, Data Science and Big Data: An Environment of Computational Intelligence, 10.1007/978-3-319-53474-9_4, (83-107), (2017).
  • Determination of allura red dye in hard candies by using digital images obtained with a mobile phone and N-PLS, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2017.05.004, 167, (44-49), (2017).
  • Fluorescence spectroscopy as tool for the geographical discrimination of coffees produced in different regions of Minas Gerais State in Brazil, Food Control, 10.1016/j.foodcont.2017.01.020, 77, (25-31), (2017).
  • Comparison of multivariate classification algorithms using EEM fluorescence data to distinguish Cryptococcus neoformans and Cryptococcus gattii pathogenic fungi, Analytical Methods, 10.1039/C7AY00781G, 9, 26, (3968-3976), (2017).
  • White matter microstructure in athletes with a history of concussion: Comparing diffusion tensor imaging (DTI) and neurite orientation dispersion and density imaging (NODDI), Human Brain Mapping, 10.1002/hbm.23658, 38, 8, (4201-4211), (2017).
  • A Theoretical Framework for Real Time Release with NIR and Chemometrics, NIR news, 10.1255/nirn.878, 17, 2, (4-6), (2017).
  • Characterisation of Barley Transformation into Malt by Three-Way Factor Analysis of near Infrared Spectra, Journal of Near Infrared Spectroscopy, 10.1255/jnirs.109, 5, 3, (157-166), (2017).
  • Tensor Envelope Partial Least-Squares Regression, Technometrics, 10.1080/00401706.2016.1272495, 59, 4, (426-436), (2016).
  • Two‐way and three‐way approaches to ultra high performance liquid chromatography–photodiode array dataset for the quantitative resolution of a two‐component mixture containing ciprofloxacin and ornidazole, Journal of Separation Science, 10.1002/jssc.201600382, 39, 18, (3488-3497), (2016).
  • Quantifying PAHs in water by three-way fluorescence spectra and second-order calibration methods, Optics Express, 10.1364/OE.24.0A1148, 24, 14, (A1148), (2016).
  • An efficient approach to the quantitative analysis of humic acid in water, Food Chemistry, 10.1016/j.foodchem.2015.06.074, 190, (1033-1039), (2016).
  • Quality prediction and quality-relevant monitoring with multilinear PLS for batch processes, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2015.11.004, 150, (9-22), (2016).
  • Simultaneous determination of ascorbic and uric acids and dopamine in human serum samples using three-way calibration with data from square wave voltammetry, Microchemical Journal, 10.1016/j.microc.2016.07.004, 129, (205-212), (2016).
  • Multiway analysis applied to time‐resolved chemiluminescence for simultaneous determination of paracetamol and codeine in pharmaceuticals, Luminescence, 10.1002/bio.3100, 31, 6, (1267-1276), (2016).
  • Recovery of excitation-emission fluorescence spectroscopy based on structural similarity, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2016.05.011, 156, (54-61), (2016).
  • Parallel factor analysis and trilinear partial least squares applied to the UPLC-PDA data array for the quantification of brimonidine tartrate and timolol maleate in an eye drop formulation, Journal of Liquid Chromatography & Related Technologies, 10.1080/10826076.2016.1174941, 39, 7, (374-383), (2016).
  • Three-way analysis of the UPLC–PDA dataset for the multicomponent quantitation of hydrochlorothiazide and olmesartan medoxomil in tablets by parallel factor analysis and three-way partial least squares, Talanta, 10.1016/j.talanta.2015.10.074, 148, (144-152), (2016).
  • VIS/NIR hyperspectral imaging and N-way PLS-DA models for detection of decay lesions in citrus fruits, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2016.05.005, 156, (241-248), (2016).
  • Modeling, Chemometrics, 10.1002/9783527699377, (213-272), (2016).
  • “Omics” Prospective Monitoring of Bariatric Surgery: Roux-En-Y Gastric Bypass Outcomes Using Mixed-Meal Tolerance Test and Time-Resolved 1 H NMR-Based Metabolomics , OMICS: A Journal of Integrative Biology, 10.1089/omi.2016.0061, 20, 7, (415-423), (2016).
  • Penalized Multi-Way Partial Least Squares for Smooth Trajectory Decoding from Electrocorticographic (ECoG) Recording, PLOS ONE, 10.1371/journal.pone.0154878, 11, 5, (e0154878), (2016).
  • Quality assessment of gasoline using comprehensive two‐dimensional gas chromatography combined with unfolded partial least squares: A reliable approach for the detection of gasoline adulteration, Journal of Separation Science, 10.1002/jssc.201500720, 39, 2, (367-374), (2015).
  • Different Chemometric Methods for the Discrimination of Commercial Aged Cachaças, Food Analytical Methods, 10.1007/s12161-015-0284-6, 9, 4, (1053-1059), (2015).
  • Second-order advantage in determining Co (II) in real samples using kinetic-spectrophotometric data matrices and multivariate curve resolution-alternating least square approach, Journal of the Iranian Chemical Society, 10.1007/s13738-015-0780-z, 13, 4, (679-687), (2015).
  • Multivariate calibration of first-order data with the correlation constrained MCR-ALS method, Chemometrics and Intelligent Laboratory Systems, 10.1016/j.chemolab.2014.11.010, 142, (143-150), (2015).
  • Unfolded partial least squares/residual bilinearization combined with the Successive Projections Algorithm for interval selection: enhanced excitation-emission fluorescence data modeling in the presence of the inner filter effect, Analytical and Bioanalytical Chemistry, 10.1007/s00216-015-8745-8, 407, 19, (5649-5659), (2015).
  • Pixel-Level Data Analysis Methods for Comprehensive Two-Dimensional Chromatography, Fundamentals and Analytical Applications of Multiway Calibration, 10.1016/B978-0-444-63527-3.00010-2, (427-463), (2015).
  • In vivo confocal Raman microspectroscopy of the human skin: highlighting of spectral markers associated to aging via a research of correlation between Raman and biometric mechanical measurements, Analytical and Bioanalytical Chemistry, 10.1007/s00216-015-8964-z, 407, 27, (8363-8372), (2015).
  • Multimodal Data Fusion: An Overview of Methods, Challenges, and Prospects, Proceedings of the IEEE, 10.1109/JPROC.2015.2460697, 103, 9, (1449-1477), (2015).
  • Unfolded and Multiway Partial Least-Squares with Residual Multilinearization, Fundamentals and Analytical Applications of Multiway Calibration, 10.1016/B978-0-444-63527-3.00007-2, (347-363), (2015).
  • Evaluation of the overall quality of olive oil using fluorescence spectroscopy, Food Chemistry, 10.1016/j.foodchem.2014.10.041, 173, (927-934), (2015).
  • A novel pretreatment method of three-dimensional fluorescence data for quantitative measurement of component contents in mixture, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 10.1016/j.saa.2014.12.112, 140, (484-488), (2015).
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