Synthesis of the Rheb and K‐Ras4B GTPases*
This research was supported by the Max‐Planck‐Gesellschaft, the Fonds der Chemischen Industrie, the DFG (SFB 642), and the Alexander von Humboldt‐Stiftung. We are grateful to Dr. C. Goemans and Prof. Dr. R. Heumann for providing DNA templates of Rheb, and C. Nowak for technical assistance.
Abstract
Now available! Farnesylated and carboxymethylated Rheb (see picture) and K‐Ras4B GTPases were synthesized in useful amounts by a combination of expressed protein ligation and solid‐phase lipopeptide synthesis. The functionality of the proteins was proven by biochemical, biophysical, and cell‐based investigations.
Number of times cited: 40
- Lei Li, Mridula Dwivedi, Nelli Erwin, Simone Möbitz, Peter Nussbaumer and Roland Winter, Interaction of KRas4B protein with C6-ceramide containing lipid model membranes, Biochimica et Biophysica Acta (BBA) - Biomembranes, (2018).
- Tom Mejuch, Guillaume Garivet, Walter Hofer, Nadine Kaiser, Eyad K. Fansa, Christiane Ehrt, Oliver Koch, Matthias Baumann, Slava Ziegler, Alfred Wittinghofer and Herbert Waldmann, Small‐Molecule Inhibition of the UNC119–Cargo Interaction, Angewandte Chemie, 129, 22, (6277-6282), (2017).
- Tom Mejuch, Guillaume Garivet, Walter Hofer, Nadine Kaiser, Eyad K. Fansa, Christiane Ehrt, Oliver Koch, Matthias Baumann, Slava Ziegler, Alfred Wittinghofer and Herbert Waldmann, Small‐Molecule Inhibition of the UNC119–Cargo Interaction, Angewandte Chemie International Edition, 56, 22, (6181-6186), (2017).
- Si-Yu Zhang, Benjamin Sperlich, Fang-Yi Li, Samy Al-Ayoubi, Hong-Xue Chen, Yu-Fen Zhao, Yan-Mei Li, Katrin Weise, Roland Winter and Yong-Xiang Chen, Phosphorylation Weakens but Does Not Inhibit Membrane Binding and Clustering of K-Ras4B, ACS Chemical Biology, 10.1021/acschembio.7b00165, 12, 6, (1703-1710), (2017).
- Christian F. W. Becker, Chemoselective Attachment of Lipids to Proteins, Chemoselective and Bioorthogonal Ligation Reactions, (391-415), (2017).
- Philipp Küchler, Gunther Zimmermann, Michael Winzker, Petra Janning, Herbert Waldmann and Slava Ziegler, Identification of novel PDEδ interacting proteins, Bioorganic & Medicinal Chemistry, (2017).
- Yan Jiang, Chunlin Zhuang, Long Chen, Junjie Lu, Guoqiang Dong, Zhenyuan Miao, Wannian Zhang, Jian Li and Chunquan Sheng, Structural Biology-Inspired Discovery of Novel KRAS–PDEδ Inhibitors, Journal of Medicinal Chemistry, 10.1021/acs.jmedchem.7b01243, 60, 22, (9400-9406), (2017).
- Serena Muratcioglu, Hyunbum Jang, Attila Gursoy, Ozlem Keskin and Ruth Nussinov, PDEδ Binding to Ras Isoforms Provides a Route to Proper Membrane Localization, The Journal of Physical Chemistry B, 10.1021/acs.jpcb.7b03035, 121, 24, (5917-5927), (2017).
- Jie Kang, Hong-Xue Chen, Si-Qi Huang, Yun-Lai Zhang, Rong Chang, Fang-Yi Li, Yan-Mei Li and Yong-Xiang Chen, Facile synthesis of Fmoc-protected phosphonate pSer mimetic and its application in assembling a substrate peptide of 14-3-3 ζ, Tetrahedron Letters, 10.1016/j.tetlet.2017.05.037, 58, 26, (2551-2553), (2017).
- Benjamin Sperlich, Shobhna Kapoor, Herbert Waldmann, Roland Winter and Katrin Weise, Regulation of K-Ras4B Membrane Binding by Calmodulin, Biophysical Journal, 10.1016/j.bpj.2016.05.042, 111, 1, (113-122), (2016).
- Eyad K. Fansa and Alfred Wittinghofer, Sorting of lipidated cargo by the Arl2/Arl3 system, Small GTPases, 7, 4, (222), (2016).
- Srisathiyanarayanan Dharmaiah, Lakshman Bindu, Timothy H. Tran, William K. Gillette, Peter H. Frank, Rodolfo Ghirlando, Dwight V. Nissley, Dominic Esposito, Frank McCormick, Andrew G. Stephen and Dhirendra K. Simanshu, Structural basis of recognition of farnesylated and methylated KRAS4b by PDEδ, Proceedings of the National Academy of Sciences, 113, 44, (E6766), (2016).
- Janine Schulte-Zweckel, Federica Rosi, Domalapally Sreenu, Hendrik Schröder, Christof Niemeyer and Gemma Triola, High Affinity Immobilization of Proteins Using the CrAsH/TC Tag, Molecules, 21, 12, (750), (2016).
- Nelli Erwin, Benjamin Sperlich, Guillaume Garivet, Herbert Waldmann, Katrin Weise and Roland Winter, Lipoprotein insertion into membranes of various complexity: lipid sorting, interfacial adsorption and protein clustering, Physical Chemistry Chemical Physics, 18, 13, (8954), (2016).
- Tom Mejuch and Herbert Waldmann, Synthesis of Lipidated Proteins, Bioconjugate Chemistry, 10.1021/acs.bioconjchem.6b00261, 27, 8, (1771-1783), (2016).
- Tom Mejuch, Hilde van Hattum, Gemma Triola, Mamta Jaiswal and Herbert Waldmann, Specificity of Lipoprotein Chaperones for the Characteristic Lipidated Structural Motifs of their Cognate Lipoproteins, ChemBioChem, 16, 17, (2460-2465), (2015).
- William K. Gillette, Dominic Esposito, Maria Abreu Blanco, Patrick Alexander, Lakshman Bindu, Cammi Bittner, Oleg Chertov, Peter H. Frank, Carissa Grose, Jane E. Jones, Zhaojing Meng, Shelley Perkins, Que Van, Rodolfo Ghirlando, Matthew Fivash, Dwight V. Nissley, Frank McCormick, Matthew Holderfield and Andrew G. Stephen, Farnesylated and methylated KRAS4b: high yield production of protein suitable for biophysical studies of prenylated protein-lipid interactions, Scientific Reports, 10.1038/srep15916, 5, 1, (2015).
- Gemma Triola, Inhibition of Oncogenic K‐Ras Signaling by Targeting K‐Ras–PDEδ Interaction, Concepts and Case Studies in Chemical Biology, (105-122), (2014).
- S. Suladze, S. Ismail and R. Winter, Thermodynamic, Dynamic and Solvational Properties of PDEδ Binding to Farnesylated Cystein: A Model Study for Uncovering the Molecular Mechanism of PDEδ Interaction with Prenylated Proteins, The Journal of Physical Chemistry B, 10.1021/jp411466r, 118, 4, (966-975), (2014).
- Hilde van Hattum and Herbert Waldmann, Chemical Biology Tools for Regulating RAS Signaling Complexity in Space and Time, Chemistry & Biology, 21, 9, (1185), (2014).
- Lech-Gustav Milroy and Christian Ottmann, The Renaissance of Ras, ACS Chemical Biology, 9, 11, (2447), (2014).
- Gunther Zimmermann, Carsten Schultz-Fademrecht, Philipp Küchler, Sandip Murarka, Shehab Ismail, Gemma Triola, Peter Nussbaumer, Alfred Wittinghofer and Herbert Waldmann, Structure Guided Design and Kinetic Analysis of Highly Potent Benzimidazole Inhibitors Targeting the PDEδ Prenyl Binding Site, Journal of Medicinal Chemistry, 57, 12, (5435), (2014).
- Qiao-Qiao He, Ge-Min Fang and Lei Liu, Design of thiol-containing amino acids for native chemical ligation at non-Cys sites, Chinese Chemical Letters, 10.1016/j.cclet.2013.03.013, 24, 4, (265-269), (2013).
- Gunther Zimmermann, Björn Papke, Shehab Ismail, Nachiket Vartak, Anchal Chandra, Maike Hoffmann, Stephan A. Hahn, Gemma Triola, Alfred Wittinghofer, Philippe I. H. Bastiaens and Herbert Waldmann, Small molecule inhibition of the KRAS–PDEδ interaction impairs oncogenic KRAS signalling, Nature, 497, 7451, (638), (2013).
- Yi‐Chao Huang, Yi‐Ming Li, Yang Chen, Man Pan, Yi‐Tong Li, Li Yu, Qing‐Xiang Guo and Lei Liu, Synthesis of Autophagosomal Marker Protein LC3‐II under Detergent‐Free Conditions, Angewandte Chemie International Edition, 52, 18, (4858-4862), (2013).
- Yi‐Chao Huang, Yi‐Ming Li, Yang Chen, Man Pan, Yi‐Tong Li, Li Yu, Qing‐Xiang Guo and Lei Liu, Synthesis of Autophagosomal Marker Protein LC3‐II under Detergent‐Free Conditions, Angewandte Chemie, 125, 18, (4958-4962), (2013).
- Aimin Yang, Yanping Li, Supansa Pantoom, Gemma Triola and Yao‐Wen Wu, Semisynthetic Lipidated LC3 Protein Mediates Membrane Fusion, ChemBioChem, 14, 11, (1296-1300), (2013).
- Alexander Werkmüller, Gemma Triola, Herbert Waldmann and Roland Winter, Rotational and Translational Dynamics of Ras Proteins upon Binding to Model Membrane Systems, ChemPhysChem, 14, 16, (3698-3705), (2013).
- Katrin Weise, Daniel Huster, Shobhna Kapoor, Gemma Triola, Herbert Waldmann and Roland Winter, Gibbs energy determinants of lipoprotein insertion into lipid membranes: the case study of Ras proteins, Faraday Discuss., 161, (549), (2013).
- Lei Liu, Sam Danishefsky and David Crich, Chemical Synthesis of Proteins, Organic Chemistry – Breakthroughs and Perspectives, (221-245), (2012).
- Gemma Triola, Herbert Waldmann and Christian Hedberg, Chemical Biology of Lipidated Proteins, ACS Chemical Biology, 7, 1, (87), (2012).
- Katrin Weise, Shobhna Kapoor, Alexander Werkmüller, Simone Möbitz, Gunther Zimmermann, Gemma Triola, Herbert Waldmann and Roland Winter, Dissociation of the K-Ras4B/PDEδ Complex upon Contact with Lipid Membranes: Membrane Delivery Instead of Extraction, Journal of the American Chemical Society, 134, 28, (11503), (2012).
- Shobhna Kapoor, Katrin Weise, Mirko Erlkamp, Gemma Triola, Herbert Waldmann and Roland Winter, The role of G-domain orientation and nucleotide state on the Ras isoform-specific membrane interaction, European Biophysics Journal, 10.1007/s00249-012-0841-5, 41, 10, (801-813), (2012).
- Anchal Chandra, Hernán E. Grecco, Venkat Pisupati, David Perera, Liam Cassidy, Ferdinandos Skoulidis, Shehab A. Ismail, Christian Hedberg, Michael Hanzal-Bayer, Ashok R. Venkitaraman, Alfred Wittinghofer and Philippe I. H. Bastiaens, The GDI-like solubilizing factor PDEδ sustains the spatial organization and signalling of Ras family proteins, Nature Cell Biology, 14, 2, (148), (2012).
- Kristina Görmer, Marco Bürger, John A. W. Kruijtzer, Ingrid Vetter, Nachiket Vartak, Lucas Brunsveld, Philippe I. H. Bastiaens, Rob M. J. Liskamp, Gemma Triola and Herbert Waldmann, Chemical‐Biological Exploration of the Limits of the Ras De‐ and Repalmitoylating Machinery, ChemBioChem, 13, 7, (1017-1023), (2012).
- Alexey Dementiev, K-Ras4B lipoprotein synthesis: Biochemical characterization, functional properties, and dimer formation, Protein Expression and Purification, 84, 1, (86), (2012).
- Shehab A Ismail, Yong-Xiang Chen, Alexandra Rusinova, Anchal Chandra, Martin Bierbaum, Lothar Gremer, Gemma Triola, Herbert Waldmann, Philippe I H Bastiaens and Alfred Wittinghofer, Arl2-GTP and Arl3-GTP regulate a GDI-like transport system for farnesylated cargo, Nature Chemical Biology, 7, 12, (942), (2011).
- Howard C. Hang and Maurine E. Linder, Exploring Protein Lipidation with Chemical Biology, Chemical Reviews, 10.1021/cr2001977, 111, 10, (6341-6358), (2011).
- Katrin Weise, Shobhna Kapoor, Christian Denter, Jörg Nikolaus, Norbert Opitz, Sebastian Koch, Gemma Triola, Andreas Herrmann, Herbert Waldmann and Roland Winter, Membrane-Mediated Induction and Sorting of K-Ras Microdomain Signaling Platforms, Journal of the American Chemical Society, 133, 4, (880), (2011).
- Eyad Kalawy Fansa, Stefanie Kristine Kösling, Eldar Zent, Alfred Wittinghofer and Shehab Ismail, PDE6δ-mediated sorting of INPP5E into the cilium is determined by cargo-carrier affinity, Nature Communications, 10.1038/ncomms11366, 7, (11366), (2016).





