Fine‐tuning the (2S)‐naringenin synthetic pathway using an iterative high‐throughput balancing strategy
Abstract
Metabolic engineering consistently demands to produce the maximum carbon and energy flux to target chemicals. To balance metabolic flux, gene expression levels of artificially synthesized pathways usually fine‐tuned using multimodular optimization strategy. However, forward construction is an engineering conundrum because a vast number of possible pathway combinations need to be constructed and analyzed. Here, an iterative high‐throughput balancing (IHTB) strategy was established to thoroughly fine‐tune the (2S)‐naringenin biosynthetic pathway. A series of gradient constitutive promoters from Escherichia coli were randomly cloned upstream of pathway genes, and the resulting library was screened using an ultraviolet spectrophotometry–fluorescence spectrophotometry high‐throughput method, which was established based on the interactions between AlCl3 and (2S)‐naringenin. The metabolic flux of the screened high‐titer strains was analyzed and iterative rounds of screening were performed based on the analysis results. After several rounds, the metabolic flux of the (2S)‐naringenin synthetic pathway was balanced, reaching a final titer of 191.9 mg/L with 29.2 mg/L p‐coumaric acid accumulation. Chalcone synthase was speculated to be the rate‐limiting enzyme because its expression level was closely related to the production of both (2S)‐naringenin and p‐coumaric acid. The established IHTB strategy can be used to efficiently balance multigene pathways, which will accelerate the development of efficient recombinant strains.
Citing Literature
Number of times cited according to CrossRef: 15
- Yi Rao, Dongbo Cai, Hao Wang, Yuxiang Xu, Shijie Xiong, Lin Gao, Min Xiong, Zhi Wang, Shouwen Chen, Xin Ma, Construction and application of a dual promoter system for efficient protein production and metabolic pathway enhancement in Bacillus licheniformis, Journal of Biotechnology, 10.1016/j.jbiotec.2020.02.015, 312, (1-10), (2020).
- Xianhao Xu, Yanfeng Liu, Guocheng Du, Rodrigo Ledesma-Amaro, Long Liu, Microbial Chassis Development for Natural Product Biosynthesis, Trends in Biotechnology, 10.1016/j.tibtech.2020.01.002, (2020).
- Ning Li, Weizhu Zeng, Sha Xu, Jingwen Zhou, Obtaining a series of native gradient promoter-5′-UTR sequences in Corynebacterium glutamicum ATCC 13032, Microbial Cell Factories, 10.1186/s12934-020-01376-3, 19, 1, (2020).
- Quentin M. Dudley, Ashty S. Karim, Connor J. Nash, Michael C. Jewett, Cell-free prototyping of limonene biosynthesis using cell-free protein synthesis, Metabolic Engineering, 10.1016/j.ymben.2020.05.006, (2020).
- Shuo-Fu Yuan, Xiunan Yi, Trevor G. Johnston, Hal S. Alper, De novo resveratrol production through modular engineering of an Escherichia coli–Saccharomyces cerevisiae co-culture, Microbial Cell Factories, 10.1186/s12934-020-01401-5, 19, 1, (2020).
- Weizhu Zeng, Likun Guo, Sha Xu, Jian Chen, Jingwen Zhou, High-Throughput Screening Technology in Industrial Biotechnology, Trends in Biotechnology, 10.1016/j.tibtech.2020.01.001, (2020).
- Ning Li, Weizhu Zeng, Sha Xu, Jingwen Zhou, Toward fine-tuned metabolic networks in industrial microorganisms, Synthetic and Systems Biotechnology, 10.1016/j.synbio.2020.05.002, 5, 2, (81-91), (2020).
- Xianhao Xu, Yanfeng Liu, Guocheng Du, Long Liu, Systems biology, synthetic biology, and metabolic engineering, Systems and Synthetic Metabolic Engineering, 10.1016/B978-0-12-821753-5.00001-0, (1-31), (2020).
- Yadira Boada, Alejandro Vignoni, Jesús Picó, Pablo Carbonell, Extended Metabolic Biosensor Design for Dynamic Pathway Regulation of Cell Factories, iScience, 10.1016/j.isci.2020.101305, 23, 7, (101305), (2020).
- Akram Muhammad, Xudong Feng, Aamir Rasool, Wentao Sun, Chun Li, Production of plant natural products through engineered Yarrowia lipolytica, Biotechnology Advances, 10.1016/j.biotechadv.2020.107555, (107555), (2020).
- Shenghu Zhou, Tingting Hao, Shumin Xu, Yu Deng, Coenzyme A thioester-mediated carbon chain elongation as a paintbrush to draw colorful chemical compounds, Biotechnology Advances, 10.1016/j.biotechadv.2020.107575, (107575), (2020).
- Song Gao, Yunbin Lyu, Weizhu Zeng, Guocheng Du, Jingwen Zhou, Jian Chen, Efficient Biosynthesis of (2 S )-Naringenin from p -Coumaric Acid in Saccharomyces cerevisiae , Journal of Agricultural and Food Chemistry, 10.1021/acs.jafc.9b05218, (2020).
- Song Gao, Hengrui Zhou, Jingwen Zhou, Jian Chen, Promoter library based pathway optimization for efficient (2S)-naringenin production from p-coumaric acid in Saccharomyces cerevisiae, Journal of Agricultural and Food Chemistry, 10.1021/acs.jafc.0c01130, (2020).
- Claire M. Palmer, Kelly K. Miller, Ankim Nguyen, Hal S. Alper, Engineering 4-coumaroyl-CoA derived polyketide production in Yarrowia lipolytica through a β-oxidation mediated strategy, Metabolic Engineering, 10.1016/j.ymben.2019.11.006, (2019).
- Mark Levisson, Carla Araya-Cloutier, Wouter J.C. de Bruijn, Menno van der Heide, José Manuel Salvador López, Jean-Marc Daran, Jean-Paul Vincken, Jules Beekwilder, Towards developing a yeast cell factory for the production of prenylated flavonoids, Journal of Agricultural and Food Chemistry, 10.1021/acs.jafc.9b01367, (2019).




