Volume 32, Issue 5 p. 335-365
Review Article

A decade of plant proteomics and mass spectrometry: Translation of technical advancements to food security and safety issues

Ganesh Kumar Agrawal

Corresponding Author

Research Laboratory for Biotechnology and Biochemistry (RLABB), P.O. Box 13265, Kathmandu, Nepal

Correspondence to: G. K. Agrawal,

Research Laboratory for Biotechnology and Biochemistry (RLABB), P.O. Box 13265, Sanepa, Kathmandu, Nepal.

E‐mail: gkagrawal123@gmail.com

R. Rakwal,

GGEC Program Office, Seino A 205, Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305‐8572, Ibaraki, Japan.

E‐mail: plantproteomics@gmail.com

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Abhijit Sarkar

Research Laboratory for Biotechnology and Biochemistry (RLABB), P.O. Box 13265, Kathmandu, Nepal

Laboratory of Air Pollution and Global Climate Change, Department of Botany, Banaras Hindu University (BHU), Varanasi, 221 005 Uttar Pradesh, India

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Pier Giorgio Righetti

Dipartimento di Chimica, Materiali e Ingegneria Chimica “G. Natta”, Politecnico di Milano, via L. Mancinelli, 7, 20131 Milano, Italy

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Romina Pedreschi

Food and Biobased Research, Wageningen University and Research Centre, P.O. Box 17, 6700 AA Wageningen, The Netherlands

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Sebastien Carpentier

University of Leuven, Division of Crop Biotechnics, Facility for Systems Biology Driven Mass Spectrometry (SYBIOMA), Leuven, Belgium

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Tai Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093 China

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Bronwyn J. Barkla

Instituto de Biotecnología, Universidad Nacional Autónoma de Mexico, A.P. 510‐3 Col. Miraval Cuernavaca, Morelos, 62250 Mexico

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Ajay Kohli

Plant Molecular Biology Laboratory, Plant Breeding, Genetics and Biotechnology Division, International Rice Research Institute (IRRI), DAPO‐7777 Metro Manila, Philippines

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Bongani Kaiser Ndimba

Proteomics Unit, Biotechnology Platform, Agricultural Research Council, Infruitec., Stellenbosch, South Africa

Proteomics Research Group, Department of Biotechnology, University of the Western Cape, Private Bag X17, Bellville, 7535 South Africa

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Natalia V. Bykova

Department of Biology, Memorial University of New found land, 232 Elizabeth Ave, St. John's, Newfoundland, A1B 3X9 Canada

Cereal Research Center, Agriculture and Agrifood Canada, 195 Dafoe Road, Winnipeg, Manitoba, Canada R3T 2M9

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Christof Rampitsch

Cereal Research Center, Agriculture and Agrifood Canada, 195 Dafoe Road, Winnipeg, Manitoba, Canada R3T 2M9

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Lello Zolla

Department of Ecology and Biology, University Tuscia, Piazzale Universita, 01100 Viterbo, Italy

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Mohamed Suhail Rafudeen

Department of Molecular & Cell Biology, University of Cape Town, Private Bag, Rondebosch, 7701 South Africa

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Rainer Cramer

Department of Chemistry/The BioCentre, University of Reading, Reading, RG6 6AS United Kingdom, UK

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Laurence Veronique Bindschedler

Department of Chemistry/The BioCentre, University of Reading, Reading, RG6 6AS United Kingdom, UK

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Nikolaos Tsakirpaloglou

Plant Molecular Biology Laboratory, Plant Breeding, Genetics and Biotechnology Division, International Rice Research Institute (IRRI), DAPO‐7777 Metro Manila, Philippines

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Roya Janeen Ndimba

iThemba LABS:National Research Foundation, Cape Town, South Africa

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Jill M. Farrant

Department of Molecular & Cell Biology, University of Cape Town, Private Bag, Rondebosch, 7701 South Africa

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Jenny Renaut

Centre de Recherche Public‐Gabriel Lippman, Department of Environment and Agrobiotechnologies (EVA), Belvaux, GD, Luxembourg

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Dominique Job

CNRS/UCBL/INSA/Bayer CropScience Joint Laboratory, UMR 5240, Bayer CropScience, 14‐20 rue Pierre BAIZET, F‐69263 Lyon cedex, France

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Shoshi Kikuchi

Plant Genome Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences (NIAS), Kannondai 2‐1‐2, Tsukuba, 305‐8602 Ibaraki, Japan

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Randeep Rakwal

Corresponding Author

Research Laboratory for Biotechnology and Biochemistry (RLABB), P.O. Box 13265, Kathmandu, Nepal

Graduate School of Life and Environmental Sciences, University of Tsukuba, 1‐1‐1 Tennoudai, Tsukuba, 305‐8572 Ibaraki, Japan

Department of Anatomy I, Showa University School of Medicine, 1‐5‐8 Hatanodai, Shinagawa, Tokyo, 142‐8555 Japan

Correspondence to: G. K. Agrawal,

Research Laboratory for Biotechnology and Biochemistry (RLABB), P.O. Box 13265, Sanepa, Kathmandu, Nepal.

E‐mail: gkagrawal123@gmail.com

R. Rakwal,

GGEC Program Office, Seino A 205, Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305‐8572, Ibaraki, Japan.

E‐mail: plantproteomics@gmail.com

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First published: 11 January 2013
Citations: 46

Abstract

Tremendous progress in plant proteomics driven by mass spectrometry (MS) techniques has been made since 2000 when few proteomics reports were published and plant proteomics was in its infancy. These achievements include the refinement of existing techniques and the search for new techniques to address food security, safety, and health issues. It is projected that in 2050, the world's population will reach 9–12 billion people demanding a food production increase of 34–70% (FAO, 2009) from today's food production. Provision of food in a sustainable and environmentally committed manner for such a demand without threatening natural resources, requires that agricultural production increases significantly and that postharvest handling and food manufacturing systems become more efficient requiring lower energy expenditure, a decrease in postharvest losses, less waste generation and food with longer shelf life. There is also a need to look for alternative protein sources to animal based (i.e., plant based) to be able to fulfill the increase in protein demands by 2050. Thus, plant biology has a critical role to play as a science capable of addressing such challenges. In this review, we discuss proteomics especially MS, as a platform, being utilized in plant biology research for the past 10 years having the potential to expedite the process of understanding plant biology for human benefits. The increasing application of proteomics technologies in food security, analysis, and safety is emphasized in this review. But, we are aware that no unique approach/technology is capable to address the global food issues. Proteomics‐generated information/resources must be integrated and correlated with other omics‐based approaches, information, and conventional programs to ensure sufficient food and resources for human development now and in the future. © 2013 Wiley Periodicals, Inc. Rapid Commun. Mass Spectrom. 32: 335–365, 2013.

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