Structure of the Cdt1 C‐terminal domain: Conservation of the winged helix fold in replication licensing factors
Abstract
In eukaryotic replication licensing, Cdt1 plays a key role by recruiting the MCM2‐7 complex onto the origin of chromosome. The C‐terminal domain of mouse Cdt1 (mCdt1C), the most conserved region in Cdt1, is essential for licensing and directly interacts with the MCM2‐7 complex. We have determined the structures of mCdt1CS (mCdt1C_small; residues 452 to 557) and mCdt1CL (mCdt1C_large; residues 420 to 557) using X‐ray crystallography and solution NMR spectroscopy, respectively. While the N‐terminal 31 residues of mCdt1CL form a flexible loop with a short helix near the middle, the rest of mCdt1C folds into a winged helix structure. Together with the middle domain of mouse Cdt1 (mCdt1M, residues 172–368), this study reveals that Cdt1 is formed with a tandem repeat of the winged helix domain. The winged helix fold is also conserved in other licensing factors including archaeal ORC and Cdc6, which supports an idea that these replication initiators may have evolved from a common ancestor. Based on the structure of mCdt1C, in conjunction with the biochemical analysis, we propose a binding site for the MCM complex within the mCdt1C.
Number of times cited: 13
- Gavin D. Grant and Jeanette G. Cook, The Temporal Regulation of S Phase Proteins During G1, DNA Replication, 10.1007/978-981-10-6955-0_16, (335-369), (2018).
- Matthew W. Parker, Michael R. Botchan and James M. Berger, Mechanisms and regulation of DNA replication initiation in eukaryotes, Critical Reviews in Biochemistry and Molecular Biology, 10.1080/10409238.2016.1274717, 52, 2, (107-144), (2017).
- Katherine M. Mann, Deborah L. Huang, Anna J. Hooppaw, Michelle M. Logsdon, Kirill Richardson, Hark Joon Lee, Jacqueline M. Kimmey, Bree B. Aldridge, Christina L. Stallings and Nancy Maizels, Rv0004 is a new essential member of the mycobacterial DNA replication machinery, PLOS Genetics, 13, 11, (e1007115), (2017).
- Pedro Pozo and Jeanette Cook, Regulation and Function of Cdt1; A Key Factor in Cell Proliferation and Genome Stability, Genes, 8, 12, (2), (2016).
- K. S. Usachev, S. V. Efimov, O. A. Kolosova, E. A. Klochkova, A. V. Aganov and V. V. Klochkov, Antimicrobial peptide protegrin-3 adopt an antiparallel dimer in the presence of DPC micelles: a high-resolution NMR study, Journal of Biomolecular NMR, 10.1007/s10858-015-9920-0, 62, 1, (71-79), (2015).
- Anja Schuetz, Yasuhiro Murakawa, Eva Rosenbaum, Markus Landthaler and Udo Heinemann, Roquin binding to target mRNAs involves a winged helix-turn-helix motif, Nature Communications, 5, (5701), (2014).
- Changdong Liu, Rentian Wu, Bo Zhou, Jiafeng Wang, Zhun Wei, Bik K. Tye, Chun Liang and Guang Zhu, Structural insights into the Cdt1-mediated MCM2–7 chromatin loading, Nucleic Acids Research, 40, 7, (3208), (2012).
- Thomas J Takara and Stephen P Bell, Multiple Cdt1 molecules act at each origin to load replication‐competent Mcm2–7 helicases, The EMBO Journal, 30, 24, (4885-4896), (2011).
- L. N. Truong and X. Wu, Prevention of DNA re-replication in eukaryotic cells, Journal of Molecular Cell Biology, 10.1093/jmcb/mjq052, 3, 1, (13-22), (2011).
- JunGoo Jee, Takeshi Mizuno, Katsuhiko Kamada, Hidehito Tochio, Yasumasa Chiba, Ken-ichiro Yanagi, Gentaro Yasuda, Hidekazu Hiroaki, Fumio Hanaoka and Masahiro Shirakawa, Structure and Mutagenesis Studies of the C-terminal Region of Licensing Factor Cdt1 Enable the Identification of Key Residues for Binding to Replicative Helicase Mcm Proteins, Journal of Biological Chemistry, 285, 21, (15931), (2010).
- Jingchuan Sun, Cecile Evrin, Stefan A Samel, Alejandra Fernández-Cid, Alberto Riera, Hironori Kawakami, Bruce Stillman, Christian Speck and Huilin Li, Cryo-EM structure of a helicase loading intermediate containing ORC–Cdc6–Cdt1–MCM2-7 bound to DNA, Nature Structural & Molecular Biology, 10.1038/nsmb.2629, 20, 8, (944-951), (2013)., (2013).
- Yuanliang Zhai, Erchao Cheng, Hao Wu, Ningning Li, Philip Yuk Kwong Yung, Ning Gao and Bik-Kwoon Tye, Open-ringed structure of the Cdt1–Mcm2–7 complex as a precursor of the MCM double hexamer, Nature Structural & Molecular Biology, 10.1038/nsmb.3374, 24, 3, (300-308), (2017)., (2017).
- Jordi Frigola, Jun He, Kerstin Kinkelin, Valerie E. Pye, Ludovic Renault, Max E. Douglas, Dirk Remus, Peter Cherepanov, Alessandro Costa and John F. X. Diffley, Cdt1 stabilizes an open MCM ring for helicase loading, Nature Communications, 10.1038/ncomms15720, 8, (15720), (2017).




