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Intermolecular interactions of a size‐expanded guanine analogue with gold nanoclusters

Laibin Zhang

Corresponding Author

School of Physics and Engineering, Qufu Normal University, Qufu, 273165, People's Republic of China

School of Physics and Engineering, Qufu Normal University, Qufu 273165, People's Republic of China. E-mail:

E-mail address:laibinzhang@gmail.com

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Tingqi Ren

School of Physics and Engineering, Qufu Normal University, Qufu, 273165, People's Republic of China

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Xiuqin Yang

School of Physics and Engineering, Qufu Normal University, Qufu, 273165, People's Republic of China

State Key Laboratory of Crystal Materials, Shandong University, Jinan, 250100, People's Republic of China

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Liuzhu Zhou

School of Physics and Engineering, Qufu Normal University, Qufu, 273165, People's Republic of China

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Xiaoming Li

School of Physics and Engineering, Qufu Normal University, Qufu, 273165, People's Republic of China

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First published: 20 March 2013
Cited by: 11

Abstract

The interactions between a size‐expanded Guanine analogue x‐Guanine (xG) and gold nanoclusters, Aun (n = 2, 4, 6, and 8), were studied theoretically using density functional theory. Geometries of neutral complexes were optimized using the B3LYP functional with the 6‐31+G(d,p) basis set for xG and the LANL2DZ basis set for gold clusters. The binding modes, interaction strength, and the charge‐transfer properties of different Aun‐xG complexes were investigated. Natural population analysis was performed for natural bond order charges. It was found that gold nanoclusters form stable complexes with xG and these binding results in a substantial amount of electronic charge being transferred from xG to the gold clusters. The vertical first ionization potential, electron affinity, Fermi Level, and the HOMO–LUMO gap of xG and its complexes with gold nanoclusters were also analyzed. © 2013 Wiley Periodicals, Inc.

Number of times cited: 11

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  • , Engineering DNA and Nucleobases for Present and Future Device Applications, Green Materials for Electronics, (191-233), (2017).
  • , DFT investigation of the interaction of gold nanoclusters with poly(amidoamine) PAMAM G0 dendrimer, Chemical Physics Letters, 10.1016/j.cplett.2016.05.007, 654, (29-36), (2016).
  • , Understanding and Designing the Gold–Bio Interface: Insights from Simulations, Small, 12, 18, (2395-2418), (2016).
  • , Binding to gold nanoclusters alters the hydrogen bonding interactions and electronic properties of canonical and size-expanded DNA base pairs, RSC Advances, 5, 61, (49408), (2015).
  • , Role of size and shape selectivity in interaction between gold nanoclusters and imidazole: a theoretical study, Journal of Molecular Modeling, 10.1007/s00894-014-2534-8, 20, 12, (2014).
  • , Modulation of structural, energetic and electronic properties of DNA and size-expanded DNA bases upon binding to gold clusters, RSC Adv., 4, 56, (29642), (2014).
  • , Carbon dioxide interaction with isolated imidazole or attached on gold clusters and surface: competition between σ H-bond and π stacking interaction, Phys. Chem. Chem. Phys., 16, 24, (12503), (2014).
  • , DFT investigation of the intermolecular interactions of a thieno-separated tricyclic guanine analog with gold nanoclusters, Computational and Theoretical Chemistry, 10.1016/j.comptc.2013.06.003, 1019, (1-10), (2013).
  • , Exploring the limits of nucleobase expansion: computational design of naphthohomologated (xx-) purines and comparison to the natural and xDNA purines, Physical Chemistry Chemical Physics, 15, 37, (15538), (2013).
  • , Guanine binding to gold nanoparticles through nonbonding interactions, Phys. Chem. Chem. Phys., 15, 44, (19284), (2013).