Stress and transposable elements: co‐evolution or useful parasites?
Pierre Capy
Tel.: +33 1 69 82 37 09; Fax: +33 1 69 07 04 21; E‐mail:
capy@pge.cnrs.gif.fr
Abstract
The activity of transposable elements can be induced by environmental and population factors and in particular by stresses in various organisms. A consequence of the increase in transposable element mobility is the creation of new genetic variability that can be useful in the face of stressful conditions. In this review, results supporting this hypothesis are presented and discussed. The main question is how stress induces the activity of transposable elements. We discuss hypotheses based upon the existence of promoters or fixation sites of transcription activators in the untranslated regions of transposable elements, similar to those found in regulatory regions of host defence genes.
Citing Literature
Number of times cited: 34
- Y. Dou, H. Rutanhira, X. Chen, A. Mishra, C. Wang and H.M. Fletcher, Role of extracytoplasmic function sigma factor PG1660 (RpoE) in the oxidative stress resistance regulatory network of Porphyromonas gingivalis, Molecular Oral Microbiology, 33, 1, (89-104), (2017).
- Arunas L. Radzvilavicius and Neil W. Blackstone, The evolution of individuality revisited, Biological Reviews, 93, 3, (1620-1633), (2018).
- Amit Kumar, Immacolata Castellano, Francesco Paolo Patti, Massimo Delledonne, Hamada Abdelgawad, Gerrit T. S. Beemster, Han Asard, Anna Palumbo and Maria Cristina Buia, Molecular response of Sargassum vulgare to acidification at volcanic CO2 vents: insights from de novo transcriptomic analysis, Molecular Ecology, 26, 8, (2276-2290), (2017).
- Md Shakhawat Hossain, Taiji Kawakatsu, Kyung Do Kim, Ning Zhang, Cuong T. Nguyen, Saad M. Khan, Josef M. Batek, Trupti Joshi, Jeremy Schmutz, Jane Grimwood, Robert J. Schmitz, Dong Xu, Scott A. Jackson, Joseph R. Ecker and Gary Stacey, Divergent cytosine DNA methylation patterns in single‐cell, soybean root hairs, New Phytologist, 214, 2, (808-819), (2017).
- Ebrahim H. Najdegerami, Amir Tokmachi and Farideh Bakhshi, Evaluating the Effects of Dietary Prebiotic Mixture of Mannan Oligosaccharide and Poly‐β‐Hydroxybutyrate on the Growth Performance, Immunity, and Survival of Rainbow Trout, Oncorhynchus mykiss (Walbaum 1792), Fingerlings, Journal of the World Aquaculture Society, 48, 3, (415-425), (2016).
- Bastien Saint‐Leandre, Isabelle Clavereau, Aurelie Hua‐Van and Pierre Capy, Transcriptional polymorphism of piRNA regulatory genes underlies the mariner activity in Drosophila simulans testes, Molecular Ecology, 26, 14, (3715-3731), (2017).
- Ana Marija Jakšić, Robert Kofler and Christian Schlötterer, Regulation of transposable elements: Interplay between TE‐encoded regulatory sequences and host‐specific trans‐acting factors in Drosophila melanogaster, Molecular Ecology, 26, 19, (5149-5159), (2017).
- SJ Russell, L Stalker and J LaMarre, PIWIs, piRNAs and Retrotransposons: Complex battles during reprogramming in gametes and early embryos, Reproduction in Domestic Animals, 52, S4, (28-38), (2017).
- Ilana Janowitz Koch, Michelle M. Clark, Michael J. Thompson, Kerry A. Deere‐Machemer, Jun Wang, Lionel Duarte, Gitanjali E. Gnanadesikan, Eskender L. McCoy, Liudmilla Rubbi, Daniel R. Stahler, Matteo Pellegrini, Elaine A. Ostrander, Robert K. Wayne, Janet S. Sinsheimer and Bridgett M. vonHoldt, The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves, Molecular Ecology, 25, 8, (1838-1855), (2016).
- Koen J. F. Verhoeven, Bridgett M. vonHoldt and Victoria L. Sork, Epigenetics in ecology and evolution: what we know and what we need to know, Molecular Ecology, 25, 8, (1631-1638), (2016).
- Jessica Stapley, Anna W. Santure and Stuart R. Dennis, Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species, Molecular Ecology, 24, 9, (2241-2252), (2015).
- Douglas E. Pyott and Attila Molnar, Going mobile: Non‐cell‐autonomous small RNAs shape the genetic landscape of plants, Plant Biotechnology Journal, 13, 3, (306-318), (2015).
- Mayumi Iwasaki and Jerzy Paszkowski, Epigenetic memory in plants, The EMBO Journal, 33, 18, (1987-1998), (2014).
- J.H. Miller, J.T. Novak, W.R. Knocke and A. Pruden, Elevation of antibiotic resistance genes at cold temperatures: implications for winter storage of sludge and biosolids, Letters in Applied Microbiology, 59, 6, (587-593), (2014).
- A. Belyayev, Bursts of transposable elements as an evolutionary driving force, Journal of Evolutionary Biology, 27, 12, (2573-2584), (2014).
- Michael F. Seidl and Bart P. H. J. Thomma, Sex or no sex: Evolutionary adaptation occurs regardless, BioEssays, 36, 4, (335-345), (2014).
- Elena Casacuberta and Josefa González, The impact of transposable elements in environmental adaptation, Molecular Ecology, 22, 6, (1503-1517), (2013).
- Georgi Bonchev and Christian Parisod, Transposable elements and microevolutionary changes in natural populations, Molecular Ecology Resources, 13, 5, (765-775), (2013).
- J. Sun, M. Wang, H. Wang, H. Zhang, X. Zhang, V. Thiyagarajan, P. Y. Qian and J. W. Qiu, De novo assembly of the transcriptome of an invasive snail and its multiple ecological applications, Molecular Ecology Resources, 12, 6, (1133-1144), (2012).
- Martina Talianova and Bohuslav Janousek, What can we learn from tobacco and other Solanaceae about horizontal DNA transfer?, American Journal of Botany, 98, 8, (1231-1242), (2011).
- D. J. RANKIN, M. BICHSEL and A. WAGNER, Mobile DNA can drive lineage extinction in prokaryotic populations, Journal of Evolutionary Biology, 23, 11, (2422-2431), (2010).
- Koen J. F. Verhoeven, Jeroen J. Jansen, Peter J. van Dijk and Arjen Biere, Stress‐induced DNA methylation changes and their heritability in asexual dandelions, New Phytologist, 185, 4, (1108-1118), (2009).
- Zhanjiang Liu, Genomescape: Characterizing the Repeat Structure of the Genome, Aquaculture Genome Technologies, (275-288), (2007).
- Hugo M. Arends and Johannes A. Jehle, Sequence analysis and quantification of transposase cDNAs of transposon TCp3.2 in Cydia pomonella larvae, Archives of Insect Biochemistry and Physiology, 63, 3, (135-145), (2006).
- David Jablonski, Evolutionary innovations in the fossil record: the intersection of ecology, development, and macroevolution, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 304B, 6, (504-519), (2005).
- Thomas R. Meagher and Christine Vassiliadis, Phenotypic impacts of repetitive DNA in flowering plants, New Phytologist, 168, 1, (71-80), (2005).
- Erin Twiss, Abbie M. Coros, Norma P. Tavakoli and Keith M. Derbyshire, Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress, Molecular Microbiology, 57, 6, (1593-1607), (2005).
- Kazuaki Matsui, Masaru Narita, Hidenori Ishii and Ginro Endo, Participation of the recA determinant in the transposition of class II transposon mini‐TnMERI1, FEMS Microbiology Letters, 253, 2, (309-314), (2006).
- Heili Ilves, Rita Hõrak, Riho Teras and Maia Kivisaar, IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn4652 in stationary phase, Molecular Microbiology, 51, 6, (1773-1785), (2004).
- Rita Hõrak, Heili Ilves, Priit Pruunsild, Martin Kuljus and Maia Kivisaar, The ColR–ColS two‐component signal transduction system is involved in regulation of Tn4652 transposition in Pseudomonas putida under starvation conditions, Molecular Microbiology, 54, 3, (795-807), (2004).
- Bryan Swingle, Michelle O'Carroll, David Haniford and Keith M. Derbyshire, The effect of host‐encoded nucleoid proteins on transposition: H‐NS influences targeting of both IS903 and Tn10, Molecular Microbiology, 52, 4, (1055-1067), (2004).
- GUGS LUSHAI, HUGH D. LOXDALE and JOHN A. ALLEN, The dynamic clonal genome and its adaptive potential, Biological Journal of the Linnean Society, 79, 1, (193-208), (2003).
- HUGH D. LOXDALE and GUGS LUSHAI, Rapid changes in clonal lines: the death of a ‘sacred cow’, Biological Journal of the Linnean Society, 79, 1, (3-16), (2003).
- Sergey Ivashuta, Marina Naumkina, Mitsuru Gau, Kazuhiro Uchiyama, Sachiko Isobe, Yuko Mizukami and Yoshiya Shimamoto, Genotype‐dependent transcriptional activation of novel repetitive elements during cold acclimation of alfalfa (Medicago sativa), The Plant Journal, 31, 5, (615-627), (2002).
