Historical biogeography and phylogeny of monachine seals (Pinnipedia: Phocidae) based on mitochondrial and nuclear DNA data
Abstract
Aim To determine the origin and diversification of monachine seals using a phylogenetic framework.
Methods Molecular sequence data from three mitochondrial genes (cyt b, ND1 and 12S), and one nuclear marker (an intron from the α‐lactalbumin gene) were examined from all extant species of monachine seals. Maximum likelihood and partitioned Bayesian inference were used to analyse separate and combined (mitochondrial + nuclear) data sets. Divergence times were estimated from the resultant phylogeny using nonparametric rate smoothing as implemented by the program r8s.
Results Mirounga, Monachus and the Lobodontini form three well‐supported clades within a monophyletic Monachinae. Lobodontini + Mirounga form a clade sister to Monachus. Molecular divergence dates indicate that the first split within the Monachinae (Lobodontini + Mirounga clade and Monachus) occurred between 11.8 and 13.8 Ma and Mirounga, Monachus and the Lobodontini originated 2.7–3.4, 9.1–10.8 and 10.0–11.6 Ma, respectively.
Main conclusions Two main clades exist within Monachinae, Monachus and Lobodontini + Mirounga. Monachus, a warm water clade, originated in the North Atlantic and maintained the temperate water affinities of their ancestors as they diversified in the subtropic regions of the Northern Hemisphere. The cold‐water clade, Lobodontini + Mirounga, dispersed southward to the cooler climates of the Southern Hemisphere. The Lobodontini continued south until reaching the Antarctic region where they diversified into the present‐day fauna. Mirounga shows an anti‐tropical distribution either reflective of a once cosmopolitan range that was separated by warming waters in the tropics or of transequatorial dispersal.
Number of times cited: 33
- Luis A. Hückstädt, Ross Seal, Encyclopedia of Marine Mammals, 10.1016/B978-0-12-804327-1.00222-3, (835-837), (2018).
- Annalisa Berta, Pinniped Evolution, Encyclopedia of Marine Mammals, 10.1016/B978-0-12-804327-1.00196-5, (712-722), (2018).
- Carlos Vildoso, An Overview on the Evolutionary History of Tropical Pinnipeds, Tropical Pinnipeds, 10.1201/9781315151588-3, (12-21), (2017).
- I. A. Koretsky, L. G. Barnes and S. J. Rahmat, Re-Evaluation of Morphological Characters Questions Current Views of Pinniped Origins, Vestnik Zoologii, 50, 4, (2016).
- G. Notarbartolo di Sciara, Marine Mammals in the Mediterranean Sea, Mediterranean Marine Mammal Ecology and Conservation, 10.1016/bs.amb.2016.08.005, (1-36), (2016).
- Ana M. Valenzuela-Toro, Nicholas D. Pyenson, Carolina S. Gutstein, Mario E. Suárez and Anjali Goswami, A new dwarf seal from the late Neogene of South America and the evolution of pinnipeds in the southern hemisphere, Papers in Palaeontology, 2, 1, (101), (2016).
- Sally Woodman, Amanda J. Gibson, Ana Rubio García, Guillermo Sanchez Contreras, John W. Rossen, Dirk Werling and Victoria Offord, Structural characterisation of Toll-like receptor 1 (TLR1) and Toll-like receptor 6 (TLR6) in elephant and harbor seals, Veterinary Immunology and Immunopathology, 10.1016/j.vetimm.2015.11.006, 169, (10-14), (2016).
- RW Boessenecker and M Churchill, The origin of elephant seals: implications of a fragmentary late Pliocene seal (Phocidae: Miroungini) from New Zealand, New Zealand Journal of Geology and Geophysics, 59, 4, (544), (2016).
- Matthew H. Van Dam and Nicholas J. Matzke, Evaluating the influence of connectivity and distance on biogeographical patterns in the south-western deserts of North America, Journal of Biogeography, 43, 8, (1514), (2016).
- Romala Govender, Preliminary phylogenetics and biogeographic history of the Pliocene seal,Homiphoca capensisfrom Langebaanweg, South Africa, Transactions of the Royal Society of South Africa, 70, 1, (25), (2015).
- Annalisa Berta, Sarah Kienle, Giovanni Bianucci and Silvia Sorbi, A Reevaluation ofPliophoca Etrusca(Pinnipedia, Phocidae) from the Pliocene of Italy: Phylogenetic and Biogeographic Implications, Journal of Vertebrate Paleontology, 35, 1, (e889144), (2015).
- Luis Mariano González, Prehistoric and historic distributions of the critically endangered Mediterranean monk seal (Monachus monachus) in the eastern Atlantic, Marine Mammal Science, 31, 3, (1168-1192), (2015).
- Annalisa Berta, James L. Sumich and Kit M. Kovacs, Evolution and Geography, Marine Mammals, 10.1016/B978-0-12-397002-2.00006-5, (131-166), (2015).
- Dirk-Martin Scheel, Graham Slater, Sergios-Orestis Kolokotronis, Charles Potter, David Rotstein, Kyriakos Tsangaras, Alex Greenwood and Kristofer M. Helgen, Biogeography and taxonomy of extinct and endangered monk seals illuminated by ancient DNA and skull morphology, ZooKeys, 409, (1), (2014).
- Collin S. VanBuren, Matthew Bonnan and Peter Dodson, Forearm Posture and Mobility in Quadrupedal Dinosaurs, PLoS ONE, 8, 9, (e74842), (2013).
- John C. Briggs, Brian W. Bowen and Craig McClain, Marine shelf habitat: biogeography and evolution, Journal of Biogeography, 40, 6, (1023-1035), (2013).
- Ainsley E. Seago, Jose Adriano Giorgi, Jiahui Li and Adam Ślipiński, Phylogeny, classification and evolution of ladybird beetles (Coleoptera: Coccinellidae) based on simultaneous analysis of molecular and morphological data, Molecular Phylogenetics and Evolution, 60, 1, (137), (2011).
- Giovanni Bianucci, Michael Gatt, Rita Catanzariti, Silvia Sorbi, Charles G. Bonavia, Richard Curmi and Angelo Varola, Systematics, biostratigraphy and evolutionary pattern of the Oligo-Miocene marine mammals from the Maltese Islands, Geobios, 44, 6, (549), (2011).
- JT Eastman, E Barrera-Oro and E Moreira, Adaptive radiation at a low taxonomic level: divergence in buoyancy of the ecologically similar Antarctic fish Notothenia coriiceps and N. rossii , Marine Ecology Progress Series, 438, (195), (2011).
- Jennifer K. Schultz, Amy J. Marshall and Monika Pfunder, Genome-Wide Loss of Diversity in the Critically Endangered Hawaiian Monk Seal, Diversity, 2, 11, (863), (2010).
- Tara L. Fulton and Curtis Strobeck, Multiple fossil calibrations, nuclear loci and mitochondrial genomes provide new insight into biogeography and divergence timing for true seals (Phocidae, Pinnipedia), Journal of Biogeography, 37, 5, (814-829), (2010).
- T. L. Fulton and C. Strobeck, Multiple markers and multiple individuals refine true seal phylogeny and bring molecules and morphology back in line, Proceedings of the Royal Society B: Biological Sciences, 277, 1684, (1065), (2010).
- K K Dasmahapatra, J I Hoffman and W Amos, Pinniped phylogenetic relationships inferred using AFLP markers, Heredity, 103, 2, (168), (2009).
- Annalisa Berta, Pinniped Evolution, Encyclopedia of Marine Mammals, 10.1016/B978-0-12-373553-9.00199-1, (861-868), (2009).
- Annalisa Berta, Pinnipedia, Overview, Encyclopedia of Marine Mammals, 10.1016/B978-0-12-373553-9.00202-9, (878-885), (2009).
- Sergio L. Pereira and Allan J. Baker, DNA evidence for a Paleocene origin of the Alcidae (Aves: Charadriiformes) in the Pacific and multiple dispersals across northern oceans, Molecular Phylogenetics and Evolution, 46, 2, (430), (2008).
- J. K. Schultz, J. D. Baker, R. J. Toonen and B. W. Bowen, Extremely Low Genetic Diversity in the Endangered Hawaiian Monk Seal (Monachus schauinslandi), Journal of Heredity, 100, 1, (25), (2008).
- John C. Briggs, Marine longitudinal biodiversity: causes and conservation, Diversity and Distributions, 13, 5, (544-555), (2007).
- Ben D. Marks, Jason D. Weckstein and Robert G. Moyle, Molecular phylogenetics of the bee-eaters (Aves: Meropidae) based on nuclear and mitochondrial DNA sequence data, Molecular Phylogenetics and Evolution, 45, 1, (23), (2007).
- MaryJ. Donohue and David G. Foley, REMOTE SENSING REVEALS LINKS AMONG THE ENDANGERED HAWAIIAN MONK SEAL, MARINE DEBRIS, AND EL NIÑO, Marine Mammal Science, 23, 2, (468), (2007).
- J. Velez-Juarbe, C. A Brochu and H. Santos, A gharial from the Oligocene of Puerto Rico: transoceanic dispersal in the history of a non-marine reptile, Proceedings of the Royal Society B: Biological Sciences, 274, 1615, (1245), (2007).
- Ulfur Arnason, Anette Gullberg, Axel Janke, Morgan Kullberg, Niles Lehman, Evgeny A. Petrov and Risto Väinölä, Pinniped phylogeny and a new hypothesis for their origin and dispersal, Molecular Phylogenetics and Evolution, 41, 2, (345), (2006).
- Annalisa Berta, James L. Sumich, Kit M. Kovacs, Pieter Arend Folkens and Peter J. Adam, Pinniped Evolution and Systematics, Marine Mammals, 10.1016/B978-012088552-7/50004-7, (27-50), (2006).




