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THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
Abstract
An important tenet of evolutionary developmental biology (“evo devo”) is that adaptive mutations affecting morphology are more likely to occur in the cis‐regulatory regions than in the protein‐coding regions of genes. This argument rests on two claims: (1) the modular nature of cis‐regulatory elements largely frees them from deleterious pleiotropic effects, and (2) a growing body of empirical evidence appears to support the predominant role of gene regulatory change in adaptation, especially morphological adaptation. Here we discuss and critique these assertions. We first show that there is no theoretical or empirical basis for the evo devo contention that adaptations involving morphology evolve by genetic mechanisms different from those involving physiology and other traits. In addition, some forms of protein evolution can avoid the negative consequences of pleiotropy, most notably via gene duplication. In light of evo devo claims, we then examine the substantial data on the genetic basis of adaptation from both genome‐wide surveys and single‐locus studies. Genomic studies lend little support to the cis‐regulatory theory: many of these have detected adaptation in protein‐coding regions, including transcription factors, whereas few have examined regulatory regions. Turning to single‐locus studies, we note that the most widely cited examples of adaptive cis‐regulatory mutations focus on trait loss rather than gain, and none have yet pinpointed an evolved regulatory site. In contrast, there are many studies that have both identified structural mutations and functionally verified their contribution to adaptation and speciation. Neither the theoretical arguments nor the data from nature, then, support the claim for a predominance of cis‐regulatory mutations in evolution. Although this claim may be true, it is at best premature. Adaptation and speciation probably proceed through a combination of cis‐regulatory and structural mutations, with a substantial contribution of the latter.
Citing Literature
Number of times cited: 486
- Frédéric Fyon and Thomas Lenormand, Cis‐regulator runaway and divergence in asexuals, Evolution, 72, 3, (426-439), (2018).
- Adam G Diehl and Alan P Boyle, Conserved and species-specific transcription factor co-binding patterns drive divergent gene regulation in human and mouse, Nucleic Acids Research, (2018).
- Wensheng Zhao, Zijing Chen, Xiaofeng Liu, Gen Che, Ran Gu, Jianyu Zhao, Zhongyi Wang, Yu Hou and Xiaolan Zhang, Cs is required for shoot meristem maintenance via interaction with WUSCHEL in cucumber (Cucumis sativus), New Phytologist, 218, 1, (344-356), (2017).
- Shivam Bhardwaj, Kathleen L Prudic, Ashley Bear, Mainak Dasgupta, Bethany R Wasik, Xiaoling Tong, Wei Fun Cheong, Markus R Wenk and Antónia Monteiro, Sex Differences in 20-Hydroxyecdysone Hormone Levels Control Sexual Dimorphism in Bicyclus anynana Wing Patterns, Molecular Biology and Evolution, 35, 2, (465), (2018).
- Rui Diogo, Where is, in 2017, the evo in evo‐devo (evolutionary developmental biology)?, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 330, 1, (15-22), (2018).
- Andreas Härer, Axel Meyer and Julián Torres‐Dowdall, Convergent phenotypic evolution of the visual system via different molecular routes: How Neotropical cichlid fishes adapt to novel light environments, Evolution Letters, 2, 4, (341-354), (2018).
- Julia M. Rogers and Martha L. Bulyk, Diversification of transcription factor–DNA interactions and the evolution of gene regulatory networks, Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 10, 5, (2018).
- Christopher T. Cole and Pär K. Ingvarsson, Pathway position constrains the evolution of an ecologically important pathway in aspens (Populus tremula L.), Molecular Ecology, 27, 16, (3317-3330), (2018).
- Simpla Mahato, Jing Nie, David C. Plachetzki and Andrew C. Zelhof, A mosaic of independent innovations involving eyes shut are critical for the evolutionary transition from fused to open rhabdoms, Developmental Biology, 10.1016/j.ydbio.2018.09.016, (2018).
- Kenneth M. Weiss, Evolution, The International Encyclopedia of Biological Anthropology, (1-16), (2018).
- Eilon Sharon, Shi-An A. Chen, Neil M. Khosla, Justin D. Smith, Jonathan K. Pritchard and Hunter B. Fraser, Functional Genetic Variants Revealed by Massively Parallel Precise Genome Editing, Cell, 10.1016/j.cell.2018.08.057, 175, 2, (544-557.e16), (2018).
- Silvia Caianiello, Mechanistic philosophies of development: Theodor Boveri and Eric H. Davidson, Marine Genomics, 10.1016/j.margen.2018.09.009, (2018).
- Mark J Berger, Aaron M Wenger, Harendra Guturu and Gill Bejerano, Independent erosion of conserved transcription factor binding sites points to shared hindlimb, vision and external testes loss in different mammals, Nucleic Acids Research, 10.1093/nar/gky741, 46, 18, (9299-9308), (2018).
- Qing Ma, Wenheng Zhang and Qiu‐Yun (Jenny) Xiang, Evolution and developmental genetics of floral display—A review of progress, Journal of Systematics and Evolution, 55, 6, (487-515), (2017).
- Etienne Loire, Sergio Tusso, Pierre Caminade, Dany Severac, Pierre Boursot, Guila Ganem and Carole M. Smadja, Do changes in gene expression contribute to sexual isolation and reinforcement in the house mouse?, Molecular Ecology, 26, 19, (5189-5202), (2017).
- Mafalda S. Ferreira, Paulo C. Alves, Colin M. Callahan, João P. Marques, L. Scott Mills, Jeffrey M. Good and José Melo‐Ferreira, The transcriptional landscape of seasonal coat colour moult in the snowshoe hare, Molecular Ecology, 26, 16, (4173-4185), (2017).
- Lily C. Hughes, Gustavo M. Somoza, Bryan N. Nguyen, James P. Bernot, Mariano González‐Castro, Juan Martín Díaz de Astarloa and Guillermo Ortí, Transcriptomic differentiation underlying marine‐to‐freshwater transitions in the South American silversides Odontesthes argentinensis and O. bonariensis (Atheriniformes), Ecology and Evolution, 7, 14, (5258-5268), (2017).
- Hafiz Ishfaq Ahmad, Guiqiong Liu, Xunping Jiang, Chenhui Liu, Yuqing Chong and Huang Huarong, Adaptive molecular evolution of 1R gene reveals the evidence for positive diversifying selection in indigenous goat populations, Ecology and Evolution, 7, 14, (5170-5180), (2017).
- Ralf F. Schneider and Axel Meyer, How plasticity, genetic assimilation and cryptic genetic variation may contribute to adaptive radiations, Molecular Ecology, 26, 1, (330-350), (2016).
- Ricardo Mallarino, Tess A. Linden, Catherine R. Linnen and Hopi E. Hoekstra, The role of isoforms in the evolution of cryptic coloration in Peromyscus mice, Molecular Ecology, 26, 1, (245-258), (2016).
- Ramprasad Neethiraj, Emily A. Hornett, Jason A. Hill and Christopher W. Wheat, Investigating the genomic basis of discrete phenotypes using a Pool‐Seq‐only approach: New insights into the genetics underlying colour variation in diverse taxa, Molecular Ecology, 26, 19, (4990-5002), (2017).
- David B. Lowry, Sean Hoban, Joanna L. Kelley, Katie E. Lotterhos, Laura K. Reed, Michael F. Antolin and Andrew Storfer, Breaking RAD: an evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation, Molecular Ecology Resources, 17, 2, (142-152), (2016).
- Asano Ishikawa, Makoto Kusakabe, Kohta Yoshida, Mark Ravinet, Takashi Makino, Atsushi Toyoda, Asao Fujiyama and Jun Kitano, Different contributions of local‐ and distant‐regulatory changes to transcriptome divergence between stickleback ecotypes, Evolution, 71, 3, (565-581), (2017).
- Julian M. Catchen, Paul A. Hohenlohe, Louis Bernatchez, W. Chris Funk, Kimberly R. Andrews and Fred W. Allendorf, Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations, Molecular Ecology Resources, 17, 3, (362-365), (2017).
- Amy L. Toth and Sandra M. Rehan, Molecular Evolution of Insect Sociality: An Eco-Evo-Devo Perspective, Annual Review of Entomology, 62, 1, (419), (2017).
- Betül Kacar, Xueliang Ge, Suparna Sanyal and Eric A. Gaucher, Experimental Evolution of Escherichia coli Harboring an Ancient Translation Protein, Journal of Molecular Evolution, 10.1007/s00239-017-9781-0, 84, 2-3, (69-84), (2017).
- Andrea González-González, Shaun M. Hug, Alejandra Rodríguez-Verdugo, Jagdish Suresh Patel and Brandon S. Gaut, Adaptive Mutations in RNA Polymerase and the Transcriptional Terminator Rho Have Similar Effects on Escherichia coli Gene Expression, Molecular Biology and Evolution, 10.1093/molbev/msx216, 34, 11, (2839-2855), (2017).
- José Luis Campos, Keira J A Johnston and Brian Charlesworth, The Effects of Sex-Biased Gene Expression and X-Linkage on Rates of Sequence Evolution in Drosophila, Molecular Biology and Evolution, (2017).
- Mark J Margres, Kenneth P Wray, Alyssa T B Hassinger, Micaiah J Ward, James J McGivern, Emily Moriarty Lemmon, Alan R Lemmon and Darin R Rokyta, Quantity, Not Quality: Rapid Adaptation in a Polygenic Trait Proceeded Exclusively through Expression Differentiation, Molecular Biology and Evolution, 34, 12, (3099), (2017).
- Vuk Vujovic, Andre Rosendo, Luzius Brodbeck and Fumiya Iida, Evolutionary Developmental Robotics: Improving Morphology and Control of Physical Robots, Artificial Life, 23, 2, (169), (2017).
- Kimberly L. Cooper, Decoding the evolution of species, Science, 356, 6341, (904), (2017).
- Simon Weinberger, Matthew P Topping, Jiekun Yan, Annelies Claeys, Natalie De Geest, Duru Ozbay, Talah Hassan, Xiaoli He, Joerg T Albert, Bassem A Hassan and Ariane Ramaekers, Evolutionary changes in transcription factor coding sequence quantitatively alter sensory organ development and function, eLife, 6, (2017).
- Brent A. Berger, Jiahong Han, Emily B. Sessa, Andrew G. Gardner, Kelly A. Shepherd, Vincent A. Ricigliano, Rachel S. Jabaily and Dianella G. Howarth, The unexpected depths of genome‐skimming data: A case study examining Goodeniaceae floral symmetry genes, Applications in Plant Sciences, 5, 10, (2017).
- Matti Vornanen, Electrical Excitability of the Fish Heart and Its Autonomic Regulation, The Cardiovascular System - Morphology, Control and Function, 10.1016/bs.fp.2017.04.002, (99-153), (2017).
- André M.M. Sousa, Kyle A. Meyer, Gabriel Santpere, Forrest O. Gulden and Nenad Sestan, Evolution of the Human Nervous System Function, Structure, and Development, Cell, 10.1016/j.cell.2017.06.036, 170, 2, (226-247), (2017).
- Armita Nourmohammad, Joachim Rambeau, Torsten Held, Viera Kovacova, Johannes Berg and Michael Lässig, Adaptive Evolution of Gene Expression in Drosophila, Cell Reports, 20, 6, (1385), (2017).
- Clint Rhode, Aletta E. Bester-van der Merwe and Rouvay Roodt-Wilding, An assessment of spatio-temporal genetic variation in the South African abalone (Haliotis midae), using SNPs: implications for conservation management, Conservation Genetics, 18, 1, (17), (2017).
- Julián Torres-Dowdall, Michele E.R. Pierotti, Andreas Härer, Nidal Karagic, Joost M. Woltering, Frederico Henning, Kathryn R. Elmer and Axel Meyer, Rapid and Parallel Adaptive Evolution of the Visual System of Neotropical Midas Cichlid Fishes, Molecular Biology and Evolution, 10.1093/molbev/msx143, 34, 10, (2469-2485), (2017).
- Douglas H. Erwin, Developmental push or environmental pull? The causes of macroevolutionary dynamics, History and Philosophy of the Life Sciences, 10.1007/s40656-017-0163-0, 39, 4, (2017).
- Jian-Rong Yang, Calum J. Maclean, Chungoo Park, Huabin Zhao and Jianzhi Zhang, Intra and Interspecific Variations of Gene Expression Levels in Yeast Are Largely Neutral: (Nei Lecture, SMBE 2016, Gold Coast), Molecular Biology and Evolution, 34, 9, (2125), (2017).
- Peter W. H. Holland, Ferdinand Marlétaz, Ignacio Maeso, Thomas L. Dunwell and Jordi Paps, New genes from old: asymmetric divergence of gene duplicates and the evolution of development, Philosophical Transactions of the Royal Society B: Biological Sciences, 10.1098/rstb.2015.0480, 372, 1713, (20150480), (2016).
- Vincenzo Cavalieri, Fabiana Geraci, Giovanni Spinelli and Michael Schubert, Diversification of spatiotemporal expression and copy number variation of the echinoid hbox12/pmar1/micro1 multigene family, PLOS ONE, 12, 3, (e0174404), (2017).
- Donna L. Maney, Polymorphisms in sex steroid receptors: From gene sequence to behavior, Frontiers in Neuroendocrinology, 10.1016/j.yfrne.2017.07.003, 47, (47-65), (2017).
- Sri Pratima Nandamuri, Brian E. Dalton and Karen L. Carleton, Determination of the Genetic Architecture Underlying Short Wavelength Sensitivity in Lake Malawi Cichlids, Journal of Heredity, 10.1093/jhered/esx020, 108, 4, (379-390), (2017).
- Shuping Zhang, Xianglong Xu, Weiwei Wang, Wenyu Yang and Wei Liang, Clock gene is associated with individual variation in the activation of reproductive endocrine and behavior of Asian short toed lark, Scientific Reports, 7, 1, (2017).
- Pooja Singh, Christine Börger, Heather More and Christian Sturmbauer, The Role of Alternative Splicing and Differential Gene Expression in Cichlid Adaptive Radiation, Genome Biology and Evolution, 9, 10, (2764), (2017).
- A. M. Westram and M. Ravinet, Land ahoy? Navigating the genomic landscape of speciation while avoiding shipwreck, Journal of Evolutionary Biology, 30, 8, (1522-1525), (2017).
- Maria Litovchenko and Stefan Laurent, TEMPLE: analysing population genetic variation at transcription factor binding sites, Molecular Ecology Resources, 16, 6, (1428-1434), (2016).
- Ben‐Yang Liao and Meng‐Pin Weng, Functionalities of expressed messenger RNAs revealed from mutant phenotypes, Wiley Interdisciplinary Reviews: RNA, 7, 4, (416-427), (2016).
- Karen L. Carleton, Brian E. Dalton, Daniel Escobar‐Camacho and Sri Pratima Nandamuri, Proximate and ultimate causes of variable visual sensitivities: Insights from cichlid fish radiations, genesis, 54, 6, (299-325), (2016).
- Severin Uebbing, Axel Künstner, Hannu Mäkinen, Niclas Backström, Paulina Bolivar, Reto Burri, Ludovic Dutoit, Carina F. Mugal, Alexander Nater, Bronwen Aken, Paul Flicek, Fergal J. Martin, Stephen M. J. Searle and Hans Ellegren, Divergence in gene expression within and between two closely related flycatcher species, Molecular Ecology, 25, 9, (2015-2028), (2016).
- Safaa Dalla and Susanne Dobler, Gene duplications circumvent trade‐offs in enzyme function: Insect adaptation to toxic host plants, Evolution, 70, 12, (2767-2777), (2016).
- Irene T. Liao, Hongyan Shan, Guixia Xu and Rui Zhang, Bridging evolution and development in plants, New Phytologist, 212, 4, (827-830), (2016).
- H. Hipperson, L. T. Dunning, W. J. Baker, R. K. Butlin, I. Hutton, A. S. T. Papadopulos, C. M. Smadja, T. C. Wilson, C. Devaux and V. Savolainen, Ecological speciation in sympatric palms: 2. Pre‐ and post‐zygotic isolation, Journal of Evolutionary Biology, 29, 11, (2143-2156), (2016).
- Matthew D. Herron, Origins of multicellular complexity: Volvox and the volvocine algae, Molecular Ecology, 25, 6, (1213-1223), (2016).
- Madelaine Bartlett, Beth Thompson, Holly Brabazon, Robert Del Gizzi, Thompson Zhang and Clinton Whipple, Evolutionary Dynamics of Floral Homeotic Transcription Factor Protein–Protein Interactions, Molecular Biology and Evolution, 33, 6, (1486), (2016).
- Andrew C. Bergen, Gerilyn M. Olsen and Justin C. Fay, DivergentMLS1Promoters Lie on a Fitness Plateau for Gene Expression, Molecular Biology and Evolution, 33, 5, (1270), (2016).
- A.A. Sadier, Regulatory and Coding Changes in Developmental Evolution, Roles of, Encyclopedia of Evolutionary Biology, 10.1016/B978-0-12-800049-6.00129-3, (433-440), (2016).
- Peng Hu, Mingli Liu, Yimeng Liu, Jinfeng Wang, Dong Zhang, Hongbo Niu, Shouwen Jiang, Jian Wang, Dongsheng Zhang, Bingshe Han, Qianghua Xu and Liangbiao Chen, Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish, Scientific Reports, 6, 1, (2016).
- Craig E. Stanley and Rob J. Kulathinal, Neurogenomics and the role of a large mutational target on rapid behavioral change, Biology Direct, 11, 1, (2016).
- N. Rohner, Genome Evolution’s Role in Developmental Evolution, Encyclopedia of Evolutionary Biology, 10.1016/B978-0-12-800049-6.00322-X, (155-160), (2016).
- Gwen Swinnen, Alain Goossens and Laurens Pauwels, Lessons from Domestication: Targeting Cis-Regulatory Elements for Crop Improvement, Trends in Plant Science, 21, 6, (506), (2016).
- Joanna L. Kelley, Lenin Arias-Rodriguez, Dorrelyn Patacsil Martin, Muh-Ching Yee, Carlos D. Bustamante and Michael Tobler, Mechanisms Underlying Adaptation to Life in Hydrogen Sulfide–Rich Environments, Molecular Biology and Evolution, 33, 6, (1419), (2016).
- Richard A. Watson, Rob Mills, C. L. Buckley, Kostas Kouvaris, Adam Jackson, Simon T. Powers, Chris Cox, Simon Tudge, Adam Davies, Loizos Kounios and Daniel Power, Evolutionary Connectionism: Algorithmic Principles Underlying the Evolution of Biological Organisation in Evo-Devo, Evo-Eco and Evolutionary Transitions, Evolutionary Biology, 43, 4, (553), (2016).
- Kostas Kampourakis, The “general aspects” conceptualization as a pragmatic and effective means to introducing students to nature of science, Journal of Research in Science Teaching, 53, 5, (667-682), (2016).
- Gláucia Silva and Luiz Fernando Dias Duarte, Epigênese e epigenética: as muitas vidas do vitalismo ocidental, Horizontes Antropológicos, 22, 46, (425), (2016).
- Aoife McLysaght and Laurence D. Hurst, Open questions in the study of de novo genes: what, how and why, Nature Reviews Genetics, 17, 9, (567), (2016).
- Katrina M. Dlugosch, Samantha R. Anderson, Joseph Braasch, F. Alice Cang and Heather D. Gillette, THE DEVIL IS IN THE DETAILS, Invasion Genetics, (232-251), (2016).
- Rui Diogo, Where is the Evo in Evo‐Devo (evolutionary developmental biology)?, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 326, 1, (9-18), (2015).
- J.M. Kaplan, Philosophy, Evolutionary Biology and, Encyclopedia of Evolutionary Biology, 10.1016/B978-0-12-800049-6.00306-1, (236-245), (2016).
- Bart Deplancke, Daniel Alpern and Vincent Gardeux, The Genetics of Transcription Factor DNA Binding Variation, Cell, 166, 3, (538), (2016).
- Jacob M. Daane, Nicolas Rohner, Peter Konstantinidis, Sergej Djuranovic and Matthew P. Harris, Parallelism and Epistasis in Skeletal Evolution Identified through Use of Phylogenomic Mapping Strategies, Molecular Biology and Evolution, 33, 1, (162), (2016).
- C.C. Rittschof and G.E. Robinson, Behavioral Genetic Toolkits, Genes and Evolution, 10.1016/bs.ctdb.2016.04.001, (157-204), (2016).
- Alena Orlenko, Ashley I. Teufel, Peter B. Chi and David A. Liberles, Selection on metabolic pathway function in the presence of mutation-selection-drift balance leads to rate-limiting steps that are not evolutionarily stable, Biology Direct, 11, 1, (2016).
- Xinyi GUO, Ling XIE, Xuze ZHANG, Yinfa JI, Juan CHEN, Bo PANG, Yongtao XU, Delin QI and Songchang GUO, Signatures of functional constraint at Fgfr1a Genes in schizothoracine fishes (Pisces: Cypriniformes): The dermal skeleton variation adapted to high‐altitude environments, Integrative Zoology, 11, 2, (86-97), (2016).
- William R. Pitchers, Savvas J. Constantinou, Mauricio Losilla and Jason R. Gallant, Electric fish genomics: Progress, prospects, and new tools for neuroethology, Journal of Physiology-Paris, 10.1016/j.jphysparis.2016.10.003, 110, 3, (259-272), (2016).
- Bruno Nevado, Guy W. Atchison, Colin E. Hughes and Dmitry A. Filatov, Widespread adaptive evolution during repeated evolutionary radiations in New World lupins, Nature Communications, 7, (12384), (2016).
- J.C. Preston, Evo-Devo: Regulatory and Protein-Coding Evolution in Plant Diversification, Encyclopedia of Evolutionary Biology, 10.1016/B978-0-12-800049-6.00264-X, (13-18), (2016).
- Leslie S. Babonis, Mark Q. Martindale and Joseph F. Ryan, Do novel genes drive morphological novelty? An investigation of the nematosomes in the sea anemone Nematostella vectensis, BMC Evolutionary Biology, 10.1186/s12862-016-0683-3, 16, 1, (2016).
- Jie Guo, Rong Liu, Lei Huang, Xiao-Ming Zheng, Ping-Li Liu, Yu-Su Du, Zhe Cai, Lian Zhou, Xing-Hua Wei, Fu-Min Zhang and Song Ge, Widespread and Adaptive Alterations in Genome-Wide Gene Expression Associated with Ecological Divergence of TwoOryzaSpecies, Molecular Biology and Evolution, 33, 1, (62), (2016).
- Arjen E. van’t Hof, Pascal Campagne, Daniel J. Rigden, Carl J. Yung, Jessica Lingley, Michael A. Quail, Neil Hall, Alistair C. Darby and Ilik J. Saccheri, The industrial melanism mutation in British peppered moths is a transposable element, Nature, 534, 7605, (102), (2016).
- Bing-Hong Huang, Yi-Wen Chen, Chia-Lung Huang, Jian Gao and Pei-Chun Liao, Diversifying selection of the anthocyanin biosynthetic downstream gene UFGT accelerates floral diversity of island Scutellaria species, BMC Evolutionary Biology, 16, 1, (2016).
- Natasha I Bloch, The evolution of opsins and color vision: connecting genotype to a complex phenotype, Acta Biológica Colombiana, 21, 3, (481), (2016).
- Angel P. Diz and Juan J. Calvete, Ecological proteomics: is the field ripe for integrating proteomics into evolutionary ecology research?, Journal of Proteomics, 135, (1), (2016).
- Campbell Rolian, The Role of Genes and Development in the Evolution of the Primate Hand, The Evolution of the Primate Hand, 10.1007/978-1-4939-3646-5_5, (101-130), (2016).
- M.-A. Félix, Phenotypic Evolution With and Beyond Genome Evolution, Genes and Evolution, 10.1016/bs.ctdb.2016.04.002, (291-347), (2016).
- H. Hollocher, Genetic Variation in Populations, Encyclopedia of Evolutionary Biology, 10.1016/B978-0-12-800049-6.00021-4, (144-150), (2016).
- Bradley JSC Olson and Aurora M Nedelcu, Co-option during the evolution of multicellular and developmental complexity in the volvocine green algae, Current Opinion in Genetics & Development, 39, (107), (2016).
- D.G Howarth and M.P Dunn, Phylogenetic Approach to Studying Developmental Evolution: A Model Clade Approach, Encyclopedia of Evolutionary Biology, 10.1016/B978-0-12-800049-6.00137-2, (246-253), (2016).
- M. Emília Santos, Laura Baldo, Langyu Gu, Nicolas Boileau, Zuzana Musilova and Walter Salzburger, Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes, BMC Genomics, 17, 1, (2016).
- Carolina Pardo‐Diaz, Camilo Salazar, Chris D. Jiggins and Erica Leder, Towards the identification of the loci of adaptive evolution, Methods in Ecology and Evolution, 6, 4, (445-464), (2015).
- Chelsea D. Specht and Dianella G. Howarth, Adaptation in flower form: a comparative evodevo approach, New Phytologist, 206, 1, (74-90), (2014).
- Asher D. Cutter and Richard Jovelin, When natural selection gives gene function the cold shoulder, BioEssays, 37, 11, (1169-1173), (2015).
- R. M. Merrill, K. K. Dasmahapatra, J. W. Davey, D. D. Dell'Aglio, J. J. Hanly, B. Huber, C. D. Jiggins, M. Joron, K. M. Kozak, V. Llaurens, S. H. Martin, S. H. Montgomery, J. Morris, N. J. Nadeau, A. L. Pinharanda, N. Rosser, M. J. Thompson, S. Vanjari, R. W. R. Wallbank and Q. Yu, The diversification of Heliconius butterflies: what have we learned in 150 years?, Journal of Evolutionary Biology, 28, 8, (1417-1438), (2015).
- Roberto F. Nespolo, Andrea X. Silva, Christian C. Figueroa and Leonardo D. Bacigalupe, Anticipatory gene regulation driven by maternal effects in an insect–host system, Ecology and Evolution, 5, 23, (5601-5608), (2015).
- Charles T. Hanifin and William F. Gilly, Evolutionary history of a complex adaptation: Tetrodotoxin resistance in salamanders, Evolution, 69, 1, (232-244), (2014).
- Katrina M. Dlugosch, Samantha R. Anderson, Joseph Braasch, F. Alice Cang and Heather D. Gillette, The devil is in the details: genetic variation in introduced populations and its contributions to invasion, Molecular Ecology, 24, 9, (2095-2111), (2015).
- Emiliano Rodríguez‐Mega, Alma Piñeyro‐Nelson, Crisanto Gutierrez, Berenice García‐Ponce, María De La Paz Sánchez, Estephania Zluhan‐Martínez, Elena R. Álvarez‐Buylla and Adriana Garay‐Arroyo, Role of transcriptional regulation in the evolution of plant phenotype: A dynamic systems approach, Developmental Dynamics, 244, 9, (1074-1095), (2015).
- Daniela H. Palmer and Marcus R. Kronforst, Divergence and gene flow among Darwin's finches: A genome‐wide view of adaptive radiation driven by interspecies allele sharing, BioEssays, 37, 9, (968-974), (2015).
- Claudius F. Kratochwil and Axel Meyer, Closing the genotype–phenotype gap: Emerging technologies for evolutionary genetics in ecological model vertebrate systems, BioEssays, 37, 2, (213-226), (2014).
- Anna I. Vickrey, Eric T. Domyan, Martin P. Horvath and Michael D. Shapiro, Convergent Evolution of Head Crests in Two Domesticated Columbids Is Associated with Different Missense Mutations inEphB2, Molecular Biology and Evolution, 32, 10, (2657), (2015).
- Beverley J. Glover, Chiara A. Airoldi, Samuel F. Brockington, Mario Fernández-Mazuecos, Cecilia Martínez-Pérez, Greg Mellers, Edwige Moyroud and Lin Taylor, How Have Advances in Comparative Floral Development Influenced Our Understanding of Floral Evolution?, International Journal of Plant Sciences, 10.1086/681562, 176, 4, (307-323), (2015).
- Samuel Leiboff, Xianran Li, Heng-Cheng Hu, Natalie Todt, Jinliang Yang, Xiao Li, Xiaoqing Yu, Gary J. Muehlbauer, Marja C. P. Timmermans, Jianming Yu, Patrick S. Schnable and Michael J. Scanlon, Genetic control of morphometric diversity in the maize shoot apical meristem, Nature Communications, 6, 1, (2015).
- Jocelyn Hudon, Karen L. Wiebe, Elena Pini and Riccardo Stradi, Plumage pigment differences underlying the yellow-red differentiation in the Northern Flicker (Colaptes auratus), Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 183, (1), (2015).
- Melanie G Mayer and Ralf J Sommer, Nematode orphan genes are adopted by conserved regulatory networks and find a home in ecology, Worm, 4, 4, (e1082029), (2015).
- Karin Voordeckers, Ksenia Pougach and Kevin J Verstrepen, How do regulatory networks evolve and expand throughout evolution?, Current Opinion in Biotechnology, 34, (180), (2015).
- Martin Sebastijan Šestak and Tomislav Domazet-Lošo, Phylostratigraphic Profiles in Zebrafish Uncover Chordate Origins of the Vertebrate Brain, Molecular Biology and Evolution, 32, 2, (299), (2015).
- Mateusz Konczal, Wiesław Babik, Jacek Radwan, Edyta T. Sadowska and Paweł Koteja, Initial Molecular-Level Response to Artificial Selection for Increased Aerobic Metabolism Occurs Primarily through Changes in Gene Expression, Molecular Biology and Evolution, 10.1093/molbev/msv038, 32, 6, (1461-1473), (2015).
- Ricardo Pinho, Victor Garcia, Marcus W. Feldman and Tom J. Carney, Phenotype Accessibility and Noise in Random Threshold Gene Regulatory Networks, PLOS ONE, 10, 4, (e0119972), (2015).
- Kim A. Steige, Johan Reimegård, Daniel Koenig, Douglas G. Scofield and Tanja Slotte, Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation inCapsella, Molecular Biology and Evolution, 32, 10, (2501), (2015).
- Anthony Long, Gianni Liti, Andrej Luptak and Olivier Tenaillon, Elucidating the molecular architecture of adaptation via evolve and resequence experiments, Nature Reviews Genetics, 10.1038/nrg3937, 16, 10, (567-582), (2015).
- Severin Uebbing, Anne Konzer, Luohao Xu, Niclas Backström, Björn Brunström, Jonas Bergquist and Hans Ellegren, Quantitative Mass Spectrometry Reveals Partial Translational Regulation for Dosage Compensation in Chicken, Molecular Biology and Evolution, 10.1093/molbev/msv147, 32, 10, (2716-2725), (2015).
- Murat Tuğrul, Tiago Paixão, Nicholas H. Barton, Gašper Tkačik and Justin C. Fay, Dynamics of Transcription Factor Binding Site Evolution, PLOS Genetics, 11, 11, (e1005639), (2015).
- A. Husby, T. Kawakami, L. Ronnegard, L. Smeds, H. Ellegren and A. Qvarnstrom, Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait, Proceedings of the Royal Society B: Biological Sciences, 282, 1806, (20150156), (2015).
- Martin Helmkampf, Elizabeth Cash and Jürgen Gadau, Evolution of the Insect Desaturase Gene Family with an Emphasis on Social Hymenoptera, Molecular Biology and Evolution, 32, 2, (456), (2015).
- Federico G Hoffmann, Liam P McGuire, Brian A Counterman and David A Ray, Transposable elements and small RNAs: Genomic fuel for species diversity, Mobile Genetic Elements, 5, 5, (63), (2015).
- K.N. Chandrashekara, R. Raj Kumar, Vikas Kumar, Dhriti Banerjee, Shantanu Kundu, Biswatosh Ghosh and Kaomud Tyagi, DNA barcoding reveals host associated genetic diversity of ‘tea mosquito bug’ Helopeltis theivora (Miridae: Heteroptera) from India, Journal of Asia-Pacific Entomology, 18, 3, (541), (2015).
- N. I. Bloch, Evolution of opsin expression in birds driven by sexual selection and habitat, Proceedings of the Royal Society B: Biological Sciences, 10.1098/rspb.2014.2321, 282, 1798, (20142321-20142321), (2014).
- Alys M Cheatle Jarvela and Veronica F Hinman, Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks, EvoDevo, 6, 1, (3), (2015).
- Claudius F. Kratochwil and Axel Meyer, Evolution: Tinkering within Gene Regulatory Landscapes, Current Biology, 25, 7, (R285), (2015).
- Günter P. Wagner, Homology and the evolutionary process: reply to Haig, Love and Brown on “Homology, Genes and Evolutionary Innovation”, Biology & Philosophy, 10.1007/s10539-015-9492-0, 30, 6, (901-912), (2015).
- Andrew J. Eckert, Patricia E. Maloney, Detlev R. Vogler, Camille E. Jensen, Annette Delfino Mix and David B. Neale, Local adaptation at fine spatial scales: an example from sugar pine (Pinus lambertiana, Pinaceae), Tree Genetics & Genomes, 11, 3, (2015).
- T. B. Taylor, G. Mulley, A. H. Dills, A. S. Alsohim, L. J. McGuffin, D. J. Studholme, M. W. Silby, M. A. Brockhurst, L. J. Johnson and R. W. Jackson, Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system, Science, 347, 6225, (1014), (2015).
- Raul Correa and David A. Baum, Evolutionary transgenomics: prospects and challenges, Frontiers in Plant Science, 6, (2015).
- David L. Des Marais, Wesley D. Skillern and Thomas E. Juenger, Deeply Diverged Alleles in the Arabidopsis AREB1 Transcription Factor Drive Genome-Wide Differences in Transcriptional Response to the Environment, Molecular Biology and Evolution, 32, 4, (956), (2015).
- Campbell Rolian and Julia C. Boughner, Introduction to Evo‐Devo‐Anthro, Developmental Approaches to Human Evolution, (1-15), (2015).
- Tadeusz J. Kawecki, Can Test-Tube Evolution Explain Biodiversity?, Trends in Ecology & Evolution, 30, 10, (568), (2015).
- Kentaro K. Shimizu and Takashi Tsuchimatsu, Evolution of Selfing: Recurrent Patterns in Molecular Adaptation, Annual Review of Ecology, Evolution, and Systematics, 46, 1, (593), (2015).
- Detlef Weigel and Magnus Nordborg, Population Genomics for Understanding Adaptation in Wild Plant Species, Annual Review of Genetics, 49, 1, (315), (2015).
- Darin R. Rokyta, Kenneth P. Wray, James J. McGivern and Mark J. Margres, The transcriptomic and proteomic basis for the evolution of a novel venom phenotype within the Timber Rattlesnake (Crotalus horridus), Toxicon, 98, (34), (2015).
- Pablo Librado, Clio Der Sarkissian, Luca Ermini, Mikkel Schubert, Hákon Jónsson, Anders Albrechtsen, Matteo Fumagalli, Melinda A. Yang, Cristina Gamba, Andaine Seguin-Orlando, Cecilie D. Mortensen, Bent Petersen, Cindi A. Hoover, Belen Lorente-Galdos, Artem Nedoluzhko, Eugenia Boulygina, Svetlana Tsygankova, Markus Neuditschko, Vidhya Jagannathan, Catherine Thèves, Ahmed H. Alfarhan, Saleh A. Alquraishi, Khaled A. S. Al-Rasheid, Thomas Sicheritz-Ponten, Ruslan Popov, Semyon Grigoriev, Anatoly N. Alekseev, Edward M. Rubin, Molly McCue, Stefan Rieder, Tosso Leeb, Alexei Tikhonov, Eric Crubézy, Montgomery Slatkin, Tomas Marques-Bonet, Rasmus Nielsen, Eske Willerslev, Juha Kantanen, Egor Prokhortchouk and Ludovic Orlando, Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments, Proceedings of the National Academy of Sciences, 112, 50, (E6889), (2015).
- William Cameron Jasper, Timothy A. Linksvayer, Joel Atallah, Daniel Friedman, Joanna C. Chiu and Brian R. Johnson, Large-Scale Coding Sequence Change Underlies the Evolution of Postdevelopmental Novelty in Honey Bees, Molecular Biology and Evolution, 32, 2, (334), (2015).
- Marc T. J. Johnson, Anthony R. Ives, Jeffrey Ahern and Juha‐Pekka Salminen, Macroevolution of plant defenses against herbivores in the evening primroses, New Phytologist, 203, 1, (267-279), (2014).
- Genevieve M. Kozak, Reid S. Brennan, Emma L. Berdan, Rebecca C. Fuller and Andrew Whitehead, FUNCTIONAL AND POPULATION GENOMIC DIVERGENCE WITHIN AND BETWEEN TWO SPECIES OF KILLIFISH ADAPTED TO DIFFERENT OSMOTIC NICHES, Evolution, 68, 1, (63-80), (2013).
- Carolyn A. Wessinger and Mark D. Rausher, PREDICTABILITY AND IRREVERSIBILITY OF GENETIC CHANGES ASSOCIATED WITH FLOWER COLOR EVOLUTION IN PENSTEMON BARBATUS, Evolution, 68, 4, (1058-1070), (2014).
- Campbell Rolian, Genes, development, and evolvability in primate evolution, "Evolutionary Anthropology: Issues, News, and Reviews", 23, 3, (93-104), (2014).
- Akshay Kumar Das Adhikari, Mohd. Tanvir Qureshi, Rajesh Kumar Kar and Paike Jayadeva Bhat, Perturbation of the interaction between Gal4p and Gal80p of the accharomyces cerevisiae GAL switch results in altered responses to galactose and glucose, Molecular Microbiology, 94, 1, (202-217), (2014).
- Morten Tange Olsen, Christophe Pampoulie, Anna K. Daníelsdóttir, Emmelie Lidh, Martine Bérubé, Gísli A. Víkingsson and Per J. Palsbøll, Fin whale ‐1 and allozyme variation is not reflected in the corresponding DNA sequences, Ecology and Evolution, 4, 10, (1787-1803), (2014).
- Daniel Berner, Dario Moser, Marius Roesti, Heinz Buescher and Walter Salzburger, GENETIC ARCHITECTURE OF SKELETAL EVOLUTION IN EUROPEAN LAKE AND STREAM STICKLEBACK, Evolution, 68, 6, (1792-1805), (2014).
- M. C. Hale, J. A. Colletti, S. A. Gahr, J. Scardina, F. P. Thrower, M. Harmon, M. Carter, R. B. Phillips, G. H. Thorgaard, C. E. Rexroad and K. M. Nichols, Mapping and Expression of Candidate Genes for Development Rate in Rainbow Trout (Oncorhynchus mykiss), Journal of Heredity, 105, 4, (506), (2014).
- Simon Friedensohn and Ritwick Sawarkar, Cis-regulatory variation: significance in biomedicine and evolution, Cell and Tissue Research, 356, 3, (495), (2014).
- Maren L Friesen, Eric JB von Wettberg, Mounawer Badri, Ken S Moriuchi, Fathi Barhoumi, Peter L Chang, Sonia Cuellar-Ortiz, Matilde A Cordeiro, Wendy T Vu, Soumaya Arraouadi, Naceur Djébali, Kais Zribi, Yazid Badri, Stephanie S Porter, Mohammed Aouani, Douglas R Cook, Sharon Y Strauss and Sergey V Nuzhdin, The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula, BMC Genomics, 15, 1, (1160), (2014).
- Anamaria Necsulea and Henrik Kaessmann, Evolutionary dynamics of coding and non-coding transcriptomes, Nature Reviews Genetics, 15, 11, (734), (2014).
- Sergio Stefanni, Raul Bettencourt, Miguel Pinheiro, Gianluca De Moro, Lucia Bongiorni and Alberto Pallavicini, Transcriptome of the Deep-Sea Black Scabbardfish,Aphanopus carbo(Perciformes: Trichiuridae): Tissue-Specific Expression Patterns and Candidate Genes Associated to Depth Adaptation, International Journal of Genomics, 2014, (1), (2014).
- Stella M. K. Glasauer and Stephan C. F. Neuhauss, Whole-genome duplication in teleost fishes and its evolutionary consequences, Molecular Genetics and Genomics, 289, 6, (1045), (2014).
- Yong E Zhang and Manyuan Long, New genes contribute to genetic and phenotypic novelties in human evolution, Current Opinion in Genetics & Development, 29, (90), (2014).
- Alexa Sadier, Laurent Viriot, Sophie Pantalacci and Vincent Laudet, The ectodysplasin pathway: from diseases to adaptations, Trends in Genetics, 30, 1, (24), (2014).
- Athma A Pai and Yoav Gilad, Comparative studies of gene regulatory mechanisms, Current Opinion in Genetics & Development, 29, (68), (2014).
- Ole Seehausen, Roger K. Butlin, Irene Keller, Catherine E. Wagner, Janette W. Boughman, Paul A. Hohenlohe, Catherine L. Peichel, Glenn-Peter Saetre, Claudia Bank, Åke Brännström, Alan Brelsford, Chris S. Clarkson, Fabrice Eroukhmanoff, Jeffrey L. Feder, Martin C. Fischer, Andrew D. Foote, Paolo Franchini, Chris D. Jiggins, Felicity C. Jones, Anna K. Lindholm, Kay Lucek, Martine E. Maan, David A. Marques, Simon H. Martin, Blake Matthews, Joana I. Meier, Markus Möst, Michael W. Nachman, Etsuko Nonaka, Diana J. Rennison, Julia Schwarzer, Eric T. Watson, Anja M. Westram and Alex Widmer, Genomics and the origin of species, Nature Reviews Genetics, 10.1038/nrg3644, 15, 3, (176-192), (2014).
- Kim Lorenz, Barak A. Cohen and Greg Gibson, Causal Variation in Yeast Sporulation Tends to Reside in a Pathway Bottleneck, PLoS Genetics, 10, 9, (e1004634), (2014).
- João Barroso-Batista, Ana Sousa, Marta Lourenço, Marie-Louise Bergman, Daniel Sobral, Jocelyne Demengeot, Karina B. Xavier, Isabel Gordo and Graham Coop, The First Steps of Adaptation of Escherichia coli to the Gut Are Dominated by Soft Sweeps, PLoS Genetics, 10, 3, (e1004182), (2014).
- Jesse R. Lasky, David L. Des Marais, David B. Lowry, Inna Povolotskaya, John K. McKay, James H. Richards, Timothy H. Keitt and Thomas E. Juenger, Natural Variation in Abiotic Stress Responsive Gene Expression and Local Adaptation to Climate in Arabidopsis thaliana, Molecular Biology and Evolution, 31, 9, (2283), (2014).
- Andrea Becchetti, Empirically founded genotype–phenotype maps from mammalian cyclic nucleotide-gated ion channels, Journal of Theoretical Biology, 363, (205), (2014).
- , References, Evolution by Tumor Neofunctionalization, 10.1016/B978-0-12-800165-3.00023-0, (179-224), (2014).
- He-Qun Liu, Yan Li, David M Irwin, Ya-Ping Zhang and Dong-Dong Wu, Integrative analysis of young genes, positively selected genes and lncRNAs in the development of Drosophila melanogaster, BMC Evolutionary Biology, 14, 1, (2014).
- L. Luke, P. Campbell, M. Varea Sanchez, M. W. Nachman and E. R. S. Roldan, Sexual selection on protamine and transition nuclear protein expression in mouse species, Proceedings of the Royal Society B: Biological Sciences, 281, 1783, (20133359), (2014).
- Michael Tobler, Chathurika Henpita, Brandon Bassett, Joanna L. Kelley and Jennifer H. Shaw, H2S exposure elicits differential expression of candidate genes in fish adapted to sulfidic and non-sulfidic environments, Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 175, (7), (2014).
- D J Parker, A Gardiner, M C Neville, M G Ritchie and S F Goodwin, The evolution of novelty in conserved genes; evidence of positive selection in the Drosophila fruitless gene is localised to alternatively spliced exons, Heredity, 112, 3, (300), (2014).
- Frederico Henning and Axel Meyer, The Evolutionary Genomics of Cichlid Fishes: Explosive Speciation and Adaptation in the Postgenomic Era, Annual Review of Genomics and Human Genetics, 10.1146/annurev-genom-090413-025412, 15, 1, (417-441), (2014).
- Joseph E. Hannon Bozorgmehr, The role of self-organization in developmental evolution, Theory in Biosciences, 133, 3-4, (145), (2014).
- D. Blank, L. Wolf, M. Ackermann and O. K. Silander, The predictability of molecular evolution during functional innovation, Proceedings of the National Academy of Sciences, 111, 8, (3044), (2014).
- Adam Siepel and Leonardo Arbiza, Cis-regulatory elements and human evolution, Current Opinion in Genetics & Development, 29, (81), (2014).
- Robert J. Williamson, Emily B. Josephs, Adrian E. Platts, Khaled M. Hazzouri, Annabelle Haudry, Mathieu Blanchette, Stephen I. Wright and Michael W. Nachman, Evidence for Widespread Positive and Negative Selection in Coding and Conserved Noncoding Regions of Capsella grandiflora, PLoS Genetics, 10, 9, (e1004622), (2014).
- Erica Bree Rosenblum, Christine E. Parent and Erin E. Brandt, The Molecular Basis of Phenotypic Convergence, Annual Review of Ecology, Evolution, and Systematics, 45, 1, (203), (2014).
- Wen-Shyong Tzou, Ying Chu, Tzung-Yi Lin, Chin-Hwa Hu, Tun-Wen Pai, Hsin-Fu Liu, Han-Jia Lin, Ildeofonso Cases, Ana Rojas, Mayka Sanchez, Zong-Ye You, Ming-Wei Hsu and Fanis Missirlis, Molecular Evolution of Multiple-Level Control of Heme Biosynthesis Pathway in Animal Kingdom, PLoS ONE, 9, 1, (e86718), (2014).
- Jayson Gutiérrez and Steven Maere, Modeling the evolution of molecular systems from a mechanistic perspective, Trends in Plant Science, 10.1016/j.tplants.2014.03.004, 19, 5, (292-303), (2014).
- M. A. Markov and A. V. Markov, Computer simulation of the ontogeny of organisms with different types of symmetry, Paleontological Journal, 48, 11, (1143), (2014).
- Joel W. McGlothlin, John P. Chuckalovcak, Daniel E. Janes, Scott V. Edwards, Chris R. Feldman, Edmund D. Brodie, Michael E. Pfrender and Edmund D. Brodie, Parallel Evolution of Tetrodotoxin Resistance in Three Voltage-Gated Sodium Channel Genes in the Garter Snake Thamnophis sirtalis, Molecular Biology and Evolution, 10.1093/molbev/msu237, 31, 11, (2836-2846), (2014).
- Adrien Sicard, Anna Thamm, Cindy Marona, Young Wha Lee, Vanessa Wahl, John R. Stinchcombe, Stephen I. Wright, Christian Kappel and Michael Lenhard, Repeated Evolutionary Changes of Leaf Morphology Caused by Mutations to a Homeobox Gene, Current Biology, 24, 16, (1880), (2014).
- Serena Della Pina, Erik Souer and Ronald Koes, Arguments in the evo-devo debate: say it with flowers!, Journal of Experimental Botany, 65, 9, (2231), (2014).
- Kara E. Powder, Hélène Cousin, Gretchen P. McLinden and R. Craig Albertson, A Nonsynonymous Mutation in the Transcriptional Regulator lbh Is Associated with Cichlid Craniofacial Adaptation and Neural Crest Cell Development, Molecular Biology and Evolution, 31, 12, (3113), (2014).
- Gimme Walter and Rob Hengeveld, References, Autecology, 10.1201/b16805-14, (385-440), (2014).
- C. Sayou, M. Monniaux, M. H. Nanao, E. Moyroud, S. F. Brockington, E. Thevenon, H. Chahtane, N. Warthmann, M. Melkonian, Y. Zhang, G. K.-S. Wong, D. Weigel, F. Parcy and R. Dumas, A Promiscuous Intermediate Underlies the Evolution of LEAFY DNA Binding Specificity, Science, 343, 6171, (645), (2014).
- Laurent Angelo Arnoult, La marche génétique de l’évolution, Biologie Aujourd'hui, 208, 3, (237), (2014).
- Rachael L. Brown, Identifying Behavioral Novelty, Biological Theory, 10.1007/s13752-013-0150-y, 9, 2, (135-148), (2013).
- L. S. Babonis and M. Q. Martindale, Old Cell, New Trick? Cnidocytes as a Model for the Evolution of Novelty, Integrative and Comparative Biology, 10.1093/icb/icu027, 54, 4, (714-722), (2014).
- A. M. Reitzel, S. Herrera, M. J. Layden, M. Q. Martindale and T. M. Shank, Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics, Molecular Ecology, 22, 11, (2953-2970), (2013).
- A. Ishikawa, N. Takeuchi, M. Kusakabe, M. Kume, S. Mori, H. Takahashi and J. Kitano, Speciation in ninespine stickleback: reproductive isolation and phenotypic divergence among cryptic species of Japanese ninespine stickleback, Journal of Evolutionary Biology, 26, 7, (1417-1430), (2013).
- Michael W. Hart and Adam Foster, Highly expressed genes in gonads of the bat star Patiria miniata: gene ontology, expression differences, and gamete recognition loci, Invertebrate Biology, 132, 3, (241-250), (2013).
- Corinne E. Myers, Erin E. Saupe and Svend Stouge, A macroevolutionary expansion of the modern synthesis and the importance of extrinsic abiotic factors, Palaeontology, 56, 6, (1179-1198), (2013).
- T. Tsuchimatsu and K. K. Shimizu, Effects of pollen availability and the mutation bias on the fixation of mutations disabling the male specificity of self‐incompatibility, Journal of Evolutionary Biology, 26, 10, (2221-2232), (2013).
- Tomoyuki Kokita, Sayaka Takahashi and Hiroki Kumada, Molecular signatures of lineage‐specific adaptive evolution in a unique sea basin: the example of an anadromous goby eucopsarion petersii, Molecular Ecology, 22, 5, (1341-1355), (2013).
- Tereza Manousaki, Pincelli M. Hull, Henrik Kusche, Gonzalo Machado‐Schiaffino, Paolo Franchini, Chris Harrod, Kathryn R. Elmer and Axel Meyer, Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick‐lipped Midas cichlid fishes from Nicaragua, Molecular Ecology, 22, 3, (650-669), (2012).
- Michael A. Grillo, Changbao Li, Mark Hammond, Lijuan Wang and Douglas W. Schemske, Genetic architecture of flowering time differentiation between locally adapted populations of Arabidopsis thaliana, New Phytologist, 197, 4, (1321-1331), (2013).
- Jeanne A. Zeh and David W. Zeh, On the threshold of dispersal: hitchhiking on a giant fly favours exaggerated male traits in a male‐dimorphic pseudoscorpion, Biological Journal of the Linnean Society, 108, 3, (509-520), (2013).
- Jarosław Bryk, Mehmet Somel, Anna Lorenc and Meike Teschke, Early gene expression divergence between allopatric populations of the house mouse (Mus musculus domesticus), Ecology and Evolution, 3, 3, (558-568), (2013).
- Bruce A. Carlson and Jason R. Gallant, From Sequence to Spike to Spark: Evo-devo-neuroethology of Electric Communication in Mormyrid Fishes, Journal of Neurogenetics, 27, 3, (106), (2013).
- Jessica Chang, Yiqi Zhou, Xiaoli Hu, Lucia Lam, Cameron Henry, Erin M. Green, Ryosuke Kita, Michael S. Kobor, Hunter B. Fraser and Justin C. Fay, The Molecular Mechanism of a Cis-Regulatory Adaptation in Yeast, PLoS Genetics, 9, 9, (e1003813), (2013).
- Mariana F. Nery, Dimar J. González, Juan C. Opazo and Maria Anisimova, How to Make a Dolphin: Molecular Signature of Positive Selection in Cetacean Genome, PLoS ONE, 8, 6, (e65491), (2013).
- Jelte Rozema and Henk Schat, Salt tolerance of halophytes, research questions reviewed in the perspective of saline agriculture, Environmental and Experimental Botany, 92, (83), (2013).
- L. Barrett, D. T. Blumstein, T. H. Clutton-Brock and P. M. Kappeler, Taking note of Tinbergen, or: the promise of a biology of behaviour, Philosophical Transactions of the Royal Society B: Biological Sciences, 368, 1618, (20120352), (2013).
- Kenneth M. Olsen and Jonathan F. Wendel, A Bountiful Harvest: Genomic Insights into Crop Domestication Phenotypes, Annual Review of Plant Biology, 64, 1, (47), (2013).
- Vann Bennett and Damaris N. Lorenzo, Spectrin- and Ankyrin-Based Membrane Domains and the Evolution of Vertebrates, Functional Organization of Vertebrate Plasma Membrane, 10.1016/B978-0-12-417027-8.00001-5, (1-37), (2013).
- Adam S. Wilkins, “The Genetic Tool‐Kit”: The Life‐History of an Important Metaphor, Advances in Evolutionary Developmental Biology, (1-14), (2013).
- Daniel L. Halligan, Athanasios Kousathanas, Rob W. Ness, Bettina Harr, Lél Eöry, Thomas M. Keane, David J. Adams, Peter D. Keightley and Bret A. Payseur, Contributions of Protein-Coding and Regulatory Change to Adaptive Molecular Evolution in Murid Rodents, PLoS Genetics, 9, 12, (e1003995), (2013).
- Werner Callebaut, The Tension Between Tradition and Innovation, Biological Theory, 7, 3, (187), (2013).
- Leonardo Arbiza, Ilan Gronau, Bulent A Aksoy, Melissa J Hubisz, Brad Gulko, Alon Keinan and Adam Siepel, Genome-wide inference of natural selection on human transcription factor binding sites, Nature Genetics, 45, 7, (723), (2013).
- Astrid Böhne, Corina Heule, Nicolas Boileau and Walter Salzburger, Expression and Sequence Evolution of Aromatase cyp19a1 and Other Sexual Development Genes in East African Cichlid Fishes, Molecular Biology and Evolution, 30, 10, (2268), (2013).
- A P Hendry, Key questions in the genetics and genomics of eco-evolutionary dynamics, Heredity, 111, 6, (456), (2013).
- A. Glaser-Schmitt, A. Catalan and J. Parsch, Adaptive divergence of a transcriptional enhancer between populations of Drosophila melanogaster, Philosophical Transactions of the Royal Society B: Biological Sciences, 368, 1632, (20130024), (2013).
- Graeme D.M. Bell, Nolan C. Kane, Loren H. Rieseberg and Keith L. Adams, RNA-Seq Analysis of Allele-Specific Expression, Hybrid Effects, and Regulatory Divergence in Hybrids Compared with Their Parents from Natural Populations, Genome Biology and Evolution, 5, 7, (1309), (2013).
- Jun Kitano, Kohta Yoshida and Yutaka Suzuki, RNA sequencing reveals small RNAs differentially expressed between incipient Japanese threespine sticklebacks, BMC Genomics, 14, 1, (214), (2013).
- C C Vigueira, K M Olsen and A L Caicedo, The red queen in the corn: agricultural weeds as models of rapid adaptive evolution, Heredity, 10.1038/hdy.2012.104, 110, 4, (303-311), (2012).
- Alison Heffer and Leslie Pick, Conservation and Variation in Hox Genes: How Insect Models Pioneered the Evo-Devo Field, Annual Review of Entomology, 58, 1, (161), (2013).
- Mary Caswell Stoddard and Rebecca M. Kilner, The past, present and future of ‘cuckoos versus reed warblers’, Animal Behaviour, 85, 4, (693), (2013).
- Brett Calcott, Why how and why aren’t enough: more problems with Mayr’s proximate-ultimate distinction, Biology & Philosophy, 28, 5, (767), (2013).
- Ritwick Sawarkar and Renato Paro, Hsp90@chromatin.nucleus: an emerging hub of a networker, Trends in Cell Biology, 23, 4, (193), (2013).
- M. Rubinstein and F. S. J. de Souza, Evolution of transcriptional enhancers and animal diversity, Philosophical Transactions of the Royal Society B: Biological Sciences, 368, 1632, (20130017), (2013).
- Maxim V. Kapralov, Antonina A. Votintseva and Dmitry A. Filatov, Molecular Adaptation during a Rapid Adaptive Radiation, Molecular Biology and Evolution, 30, 5, (1051), (2013).
- Cyril Charles, Floréal Solé, Helder Gomes Rodrigues and Laurent Viriot, UNDER PRESSURE? DENTAL ADAPTATIONS TO TERMITOPHAGY AND VERMIVORY AMONG MAMMALS, Evolution, 67, 6, (1792), (2013).
- Shigehiro Kuraku, Impact of asymmetric gene repertoire between cyclostomes and gnathostomes, Seminars in Cell & Developmental Biology, 10.1016/j.semcdb.2012.12.009, 24, 2, (119-127), (2013).
- Carrie A. Wu, Matthew A. Streisfeld, Laura I. Nutter, Kaitlyn A. Cross and Ian Dworkin, The Genetic Basis of a Rare Flower Color Polymorphism in Mimulus lewisii Provides Insight into the Repeatability of Evolution, PLoS ONE, 8, 12, (e81173), (2013).
- Stavros Ioannidis, Regulatory Evolution and Theoretical Arguments in Evolutionary Biology, Science & Education, 22, 2, (279), (2013).
- Paolo Innocenti and Stephen F. Chenoweth, Interspecific Divergence of Transcription Networks along Lines of Genetic Variance in Drosophila: Dimensionality, Evolvability, and Constraint, Molecular Biology and Evolution, 10.1093/molbev/mst047, 30, 6, (1358-1367), (2013).
- K. H. W. J. ten Tusscher, Mechanisms and constraints shaping the evolution of body plan segmentation, The European Physical Journal E, 36, 5, (2013).
- J. H. Mansfield, cis-regulatory change associated with snake body plan evolution, Proceedings of the National Academy of Sciences, 110, 26, (10473), (2013).
- Sébastien Renaut, A new approach to quantify the adaptive potential of gene expression variation in gymnosperms, Molecular Ecology, 22, 9, (2361-2363), (2013).
- S. V. Scarpino, P. J. Hunt, F. J. Garcia-De-Leon, T. E. Juenger, M. Schartl and M. Kirkpatrick, Evolution of a Genetic Incompatibility in the Genus Xiphophorus, Molecular Biology and Evolution, 30, 10, (2302), (2013).
- Rachael L. Brown, Learning, evolvability and exploratory behaviour: extending the evolutionary reach of learning, Biology & Philosophy, 28, 6, (933), (2013).
- Cristian Cañestro, Ricard Albalat, Manuel Irimia and Jordi Garcia-Fernàndez, Impact of gene gains, losses and duplication modes on the origin and diversification of vertebrates, Seminars in Cell & Developmental Biology, 24, 2, (83), (2013).
- Alison K. Hottes, Peter L. Freddolino, Anupama Khare, Zachary N. Donnell, Julia C. Liu, Saeed Tavazoie and Ivan Matic, Bacterial Adaptation through Loss of Function, PLoS Genetics, 9, 7, (e1003617), (2013).
- Douglas H. Erwin and Ingo Brigandt, Novelties That Change Carrying Capacity, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 318, 6, (460-465), (2011).
- JEREMY R. DETTMAN, NICOLAS RODRIGUE, ANITA H. MELNYK, ALEX WONG, SUSAN F. BAILEY and REES KASSEN, Evolutionary insight from whole‐genome sequencing of experimentally evolved microbes, Molecular Ecology, 21, 9, (2058-2077), (2012).
- Julie Jeukens and Louis Bernatchez, Regulatory versus coding signatures of natural selection in a candidate gene involved in the adaptive divergence of whitefish species pairs (Coregonus spp.), Ecology and Evolution, 2, 1, (258-271), (2011).
- Ingo Brigandt and Alan C. Love, Conceptualizing Evolutionary Novelty: Moving Beyond Definitional Debates, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 318, 6, (417-427), (2012).
- Johannes Jaeger, David Irons and Nick Monk, The Inheritance of Process: A Dynamical Systems Approach, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 318, 8, (591-612), (2012).
- ANGEL P. DIZ, MÓNICA MARTÍNEZ‐FERNÁNDEZ and EMILIO ROLÁN‐ALVAREZ, Proteomics in evolutionary ecology: linking the genotype with the phenotype, Molecular Ecology, 21, 5, (1060-1080), (2012).
- David W. Pfennig and Karin S. Pfennig, Development and evolution of character displacement, Annals of the New York Academy of Sciences, 1256, 1, (89-107), (2012).
- Carole M. Smadja, Björn Canbäck, Renaud Vitalis, Mathieu Gautier, Julia Ferrari, Jing‐Jiang Zhou and Roger K. Butlin, LARGE‐SCALE CANDIDATE GENE SCAN REVEALS THE ROLE OF CHEMORECEPTOR GENES IN HOST PLANT SPECIALIZATION AND SPECIATION IN THE PEA APHID, Evolution, 66, 9, (2723-2738), (2012).
- E. I. HERSCH‐GREEN, H. MYBURG and M. T. J. JOHNSON, Adaptive molecular evolution of a defence gene in sexual but not functionally asexual evening primroses, Journal of Evolutionary Biology, 25, 8, (1576-1586), (2012).
- MIRIAM LIEDVOGEL, CHARLIE K. CORNWALLIS and BEN C. SHELDON, Integrating candidate gene and quantitative genetic approaches to understand variation in timing of breeding in wild tit populations, Journal of Evolutionary Biology, 25, 5, (813-823), (2012).
- Sean M. Rogers, Patrick Tamkee, Brian Summers, Sarita Balabahadra, Melissa Marks, David M. Kingsley and Dolph Schluter, GENETIC SIGNATURE OF ADAPTIVE PEAK SHIFT IN THREESPINE STICKLEBACK, Evolution, 66, 8, (2439-2450), (2012).
- TIFFANY B. MALEK, JANETTE W. BOUGHMAN, IAN DWORKIN and CATHERINE L. PEICHEL, Admixture mapping of male nuptial colour and body shape in a recently formed hybrid population of threespine stickleback, Molecular Ecology, 21, 21, (5265-5279), (2012).
- Hopi E. Hoekstra, Genomics: Stickleback is the catch of the day, Nature, 484, 7392, (46), (2012).
- Fabien Duveau, Marie-Anne Félix and Mohamed A. F. Noor, Role of Pleiotropy in the Evolution of a Cryptic Developmental Variation in Caenorhabditis elegans, PLoS Biology, 10, 1, (e1001230), (2012).
- Patricia J. Wittkopp and Gizem Kalay, Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence, Nature Reviews Genetics, 13, 1, (59), (2012).
- Sergiusz Czesny, John Epifanio, Pawel Michalak and Vincent Laudet, Genetic Divergence between Freshwater and Marine Morphs of Alewife (Alosa pseudoharengus): A ‘Next-Generation’ Sequencing Analysis, PLoS ONE, 7, 3, (e31803), (2012).
- Alessandro Minelli and Giuseppe Fusco, On the Evolutionary Developmental Biology of Speciation, Evolutionary Biology, 10.1007/s11692-012-9175-6, 39, 2, (242-254), (2012).
- Peter W. Harrison, Alison E. Wright and Judith E. Mank, The evolution of gene expression and the transcriptome–phenotype relationship, Seminars in Cell & Developmental Biology, 23, 2, (222), (2012).
- Brian K. Hall, Parallelism, deep homology, and evo‐devo, Evolution & Development, 14, 1, (29-33), (2012).
- Yann X. C. Bourgeois, Joris A. M. Bertrand, Christophe Thébaud, Borja Milá and Carles Lalueza-Fox, Investigating the Role of the Melanocortin-1 Receptor Gene in an Extreme Case of Microgeographical Variation in the Pattern of Melanin-Based Plumage Pigmentation, PLoS ONE, 7, 12, (e50906), (2012).
- Marcus R. Kronforst, Gregory S. Barsh, Artyom Kopp, James Mallet, Antónia Monteiro, Sean P. Mullen, Meredith Protas, Erica B. Rosenblum, Christopher J. Schneider and Hopi E. Hoekstra, Unraveling the thread of nature’s tapestry: the genetics of diversity and convergence in animal pigmentation, Pigment Cell & Melanoma Research, 25, 4, (411-433), (2012).
- Stephen Gaunt and Yu-Lee Paul, Changes in Cis-regulatory Elements during Morphological Evolution, Biology, 1, 3, (557), (2012).
- Jérôme Albre, Marjorie A. Liénard, Tamara M. Sirey, Silvia Schmidt, Leah K. Tooman, Colm Carraher, David R. Greenwood, Christer Löfstedt, Richard D. Newcomb and Jianzhi Zhang, Sex Pheromone Evolution Is Associated with Differential Regulation of the Same Desaturase Gene in Two Genera of Leafroller Moths, PLoS Genetics, 8, 1, (e1002489), (2012).
- Benjamín Ortiz-Rivas, Stéphanie Jaubert-Possamai, Sylvie Tanguy, Jean-Pierre Gauthier, Denis Tagu and Rispe Claude, Evolutionary study of duplications of the miRNA machinery in aphids associated with striking rate acceleration and changes in expression profiles, BMC Evolutionary Biology, 12, 1, (216), (2012).
- Teresa Z. Rzezniczak, Thomas E. Lum, Robert Harniman and Thomas J. S. Merritt, A Combination of Structural and Cis-Regulatory Factors Drives Biochemical Differences in Drosophila melanogaster Malic Enzyme, Biochemical Genetics, 50, 11-12, (823), (2012).
- J. Radwan and W. Babik, The genomics of adaptation, Proceedings of the Royal Society B: Biological Sciences, 279, 1749, (5024), (2012).
- Mateusz Banach, Katarzyna Prymula, Wiktor Jurkowski, Leszek Konieczny and Irena Roterman, Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants, Journal of Molecular Modeling, 10.1007/s00894-011-1033-4, 18, 1, (229-237), (2011).
- Cameron J Weadick and Belinda SW Chang, Complex patterns of divergence among green-sensitive (RH2a) African cichlid opsins revealed by Clade model analyses, BMC Evolutionary Biology, 10.1186/1471-2148-12-206, 12, 1, (206), (2012).
- Gabriel V. Markov and Ralf J. Sommer, The Evolution of Novelty in Conserved Gene Families, International Journal of Evolutionary Biology, 2012, (1), (2012).
- John S. Torday and Virender K. Rehan, Value Added by Thinking in Terms of the Cell–Cell Communication Model for Evolution, Evolutionary Biology, Cell–Cell Communication, and Complex Disease, (125-138), (2012).
- Michael Hiller, Bruce T. Schaar and Gill Bejerano, Hundreds of conserved non-coding genomic regions are independently lost in mammals, Nucleic Acids Research, 40, 22, (11463), (2012).
- David B. Lowry, Calvin C. Sheng, Jesse R. Lasky and John H. Willis, Five anthocyanin polymorphisms are associated with an R2R3‐MYB cluster in Mimulus guttatus (Phrymaceae), American Journal of Botany, 99, 1, (82-91), (2012).
- P. Nosil and J. L. Feder, Genomic divergence during speciation: causes and consequences, Philosophical Transactions of the Royal Society B: Biological Sciences, 367, 1587, (332), (2012).
- Felicity C. Jones, Manfred G. Grabherr, Yingguang Frank Chan, Pamela Russell, Evan Mauceli, Jeremy Johnson, Ross Swofford, Mono Pirun, Michael C. Zody, Simon White, Ewan Birney, Stephen Searle, Jeremy Schmutz, Jane Grimwood, Mark C. Dickson, Richard M. Myers, Craig T. Miller, Brian R. Summers, Anne K. Knecht, Shannon D. Brady, Haili Zhang, Alex A. Pollen, Timothy Howes, Chris Amemiya, Jen Baldwin, Toby Bloom, David B. Jaffe, Robert Nicol, Jane Wilkinson, Eric S. Lander, Federica Di Palma, Kerstin Lindblad-Toh and David M. Kingsley, The genomic basis of adaptive evolution in threespine sticklebacks, Nature, 484, 7392, (55), (2012).
- Erica K. O. Namigai and Yuichiro Suzuki, Functional conservation and divergence of BMP ligands in limb development and lipid homeostasis of holometabolous insects, Evolution & Development, 14, 3, (296-310), (2012).
- Andreas Massouras, Sebastian M. Waszak, Monica Albarca-Aguilera, Korneel Hens, Wiebke Holcombe, Julien F. Ayroles, Emmanouil T. Dermitzakis, Eric A. Stone, Jeffrey D. Jensen, Trudy F. C. Mackay, Bart Deplancke and Brian Oliver, Genomic Variation and Its Impact on Gene Expression in Drosophila melanogaster, PLoS Genetics, 8, 11, (e1003055), (2012).
- W. Tecumseh Fitch, Evolutionary Developmental Biology and Human Language Evolution: Constraints on Adaptation, Evolutionary Biology, 39, 4, (613), (2012).
- M. A. Markov and A. V. Markov, Self-organization in the ontogeny of multicellular organisms: A computer simulation, Biology Bulletin Reviews, 2, 1, (76), (2012).
- Y. Zhen, M. L. Aardema, E. M. Medina, M. Schumer and P. Andolfatto, Parallel Molecular Evolution in an Herbivore Community, Science, 10.1126/science.1226630, 337, 6102, (1634-1637), (2012).
- Carolyn A. Wessinger and Mark D. Rausher, Lessons from flower colour evolution on targets of selection, Journal of Experimental Botany, 63, 16, (5741), (2012).
- Kelly E O’Quin, Jane E Schulte, Zil Patel, Nadia Kahn, Zan Naseer, Helena Wang, Matthew A Conte and Karen L Carleton, Evolution of cichlid vision via trans-regulatory divergence, BMC Evolutionary Biology, 10.1186/1471-2148-12-251, 12, 1, (251), (2012).
- Jonathan D. Gruber, Kara Vogel, Gizem Kalay, Patricia J. Wittkopp and Joshua M. Akey, Contrasting Properties of Gene-Specific Regulatory, Coding, and Copy Number Mutations in Saccharomyces cerevisiae: Frequency, Effects, and Dominance, PLoS Genetics, 8, 2, (e1002497), (2012).
- Heather M Hines, Riccardo Papa, Mayte Ruiz, Alexie Papanicolaou, Charles Wang, H Nijhout, W McMillan and Robert D Reed, Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation, BMC Genomics, 13, 1, (288), (2012).
- Irene Gallego Romero, Ilya Ruvinsky and Yoav Gilad, Comparative studies of gene expression and the evolution of gene regulation, Nature Reviews Genetics, 13, 7, (505), (2012).
- Tadeusz J. Kawecki, Richard E. Lenski, Dieter Ebert, Brian Hollis, Isabelle Olivieri and Michael C. Whitlock, Experimental evolution, Trends in Ecology & Evolution, 27, 10, (547), (2012).
- TORE O. ELGVIN, JO S. HERMANSEN, ANNA FIJARCZYK, TIMOTHÉE BONNET, THOMAS BORGE, STEIN A. SÆTHER, KJETIL L. VOJE and GLENN‐PETER SÆTRE, Hybrid speciation in sparrows II: a role for sex chromosomes?, Molecular Ecology, 20, 18, (3823-3837), (2011).
- Andrew S. Yang and Ehab Abouheif, Gynandromorphs as indicators of modularity and evolvability in ants, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 316B, 5, (313-318), (2011).
- Pär K. Ingvarsson and Nathaniel R. Street, Association genetics of complex traits in plants, New Phytologist, 189, 4, (909-922), (2010).
- STEPHAN GREINER, UWE RAUWOLF, JÖRG MEURER and REINHOLD G. HERRMANN, The role of plastids in plant speciation, Molecular Ecology, 20, 4, (671-691), (2011).
- MARIA C. KEAYS, DANIEL BARKER, CLAUDE WICKER‐THOMAS and MICHAEL G. RITCHIE, Signatures of selection and sex‐specific expression variation of a novel duplicate during the evolution of the Drosophila desaturase gene family, Molecular Ecology, 20, 17, (3617-3630), (2011).
- Brenda J. Bradley and Richard R. Lawler, Linking genotypes, phenotypes, and fitness in wild primate populations, "Evolutionary Anthropology: Issues, News, and Reviews", 20, 3, (104-119), (2011).
- Matthew A. Streisfeld and Mark D. Rausher, POPULATION GENETICS, PLEIOTROPY, AND THE PREFERENTIAL FIXATION OF MUTATIONS DURING ADAPTIVE EVOLUTION, Evolution, 65, 3, (629-642), (2010).
- Emilie C. Snell‐Rood, Amy Cash, Mira V. Han, Teiya Kijimoto, Justen Andrews and Armin P. Moczek, DEVELOPMENTAL DECOUPLING OF ALTERNATIVE PHENOTYPES: INSIGHTS FROM THE TRANSCRIPTOMES OF HORN‐POLYPHENIC BEETLES, Evolution, 65, 1, (231-245), (2010).
- Charles B. Fenster, EVOLUTIONARY INSIGHT FROM THE MOLECULAR LANDSCAPE, Evolution, 65, 8, (2412-2418), (2011).
- Elizabeth A. McGraw, Yixin H. Ye, Brad Foley, Stephen F. Chenoweth, Megan Higgie, Emma Hine and Mark W. Blows, HIGH‐DIMENSIONAL VARIANCE PARTITIONING REVEALS THE MODULAR GENETIC BASIS OF ADAPTIVE DIVERGENCE IN GENE EXPRESSION DURING REPRODUCTIVE CHARACTER DISPLACEMENT, Evolution, 65, 11, (3126-3137), (2011).
- Pablo Razeto‐Barry and Karin Maldonado, ADAPTIVE CIS‐REGULATORY CHANGES MAY INVOLVE FEW MUTATIONS, Evolution, 65, 11, (3332-3335), (2011).
- Hunter B. Fraser, Tomas Babak, John Tsang, Yiqi Zhou, Bin Zhang, Margarete Mehrabian, Eric E. Schadt and Michael W. Nachman, Systematic Detection of Polygenic cis-Regulatory Evolution, PLoS Genetics, 7, 3, (e1002023), (2011).
- T. J. P. Sobreira, F. Marletaz, M. Simoes-Costa, D. Schechtman, A. C. Pereira, F. Brunet, S. Sweeney, A. Pani, J. Aronowicz, C. J. Lowe, B. Davidson, V. Laudet, M. Bronner, P. S. L. de Oliveira, M. Schubert and J. Xavier-Neto, Structural shifts of aldehyde dehydrogenase enzymes were instrumental for the early evolution of retinoid-dependent axial patterning in metazoans, Proceedings of the National Academy of Sciences, 108, 1, (226), (2011).
- Hunter B. Fraser, Genome-wide approaches to the study of adaptive gene expression evolution, BioEssays, 33, 6, (469), (2011).
- Michel Morange, What will result from the interaction between functional and evolutionary biology?, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 42, 1, (69), (2011).
- Kathryn R. Elmer and Axel Meyer, Adaptation in the age of ecological genomics: insights from parallelism and convergence, Trends in Ecology & Evolution, 26, 6, (298), (2011).
- Frank J. Poelwijk, Marjon G.J. de Vos and Sander J. Tans, Tradeoffs and Optimality in the Evolution of Gene Regulation, Cell, 146, 3, (462), (2011).
- Nico M. van Straalen, Thierry K. S. Janssens and Dick Roelofs, Micro-evolution of toxicant tolerance: from single genes to the genome’s tangled bank, Ecotoxicology, 20, 3, (574), (2011).
- Z.-F. Jiang, D. A. Croshaw, Y. Wang, J. Hey and C. A. Machado, Enrichment of mRNA-like Noncoding RNAs in the Divergence of Drosophila Males, Molecular Biology and Evolution, 28, 4, (1339), (2011).
- G. Bloch and C. M. Grozinger, Social molecular pathways and the evolution of bee societies, Philosophical Transactions of the Royal Society B: Biological Sciences, 366, 1574, (2155), (2011).
- Diethard Tautz and Tomislav Domazet-Lošo, The evolutionary origin of orphan genes, Nature Reviews Genetics, 12, 10, (692), (2011).
- Kelly E O'Quin, Daniel Smith, Zan Naseer, Jane Schulte, Samuel D Engel, Yong-Hwee E Loh, J Todd Streelman, Jeffrey L Boore and Karen L Carleton, Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes, BMC Evolutionary Biology, 10.1186/1471-2148-11-120, 11, 1, (2011).
- Heidi Rudi, Simen R. Sandve, Lars M. Opseth, Arild Larsen and Odd Arne Rognli, Identification of candidate genes important for frost tolerance in Festuca pratensis Huds. by transcriptional profiling, Plant Science, 180, 1, (78), (2011).
- Kousuke Hanada, Takeshi Hase, Tetsuro Toyoda, Kazuo Shinozaki and Masanori Okamoto, Origin and evolution of genes related to ABA metabolism and its signaling pathways, Journal of Plant Research, 124, 4, (455), (2011).
- Étienne Danchin, Anne Charmantier, Frances A. Champagne, Alex Mesoudi, Benoit Pujol and Simon Blanchet, Beyond DNA: integrating inclusive inheritance into an extended theory of evolution, Nature Reviews Genetics, 12, 7, (475), (2011).
- Vincent Vedel and Ivan Scotti, Promoting the promoter, Plant Science, 180, 2, (182), (2011).
- Eric H. Davidson, Evolutionary bioscience as regulatory systems biology, Developmental Biology, 357, 1, (35), (2011).
- S. Kuraku and S. Kuratani, Genome-Wide Detection of Gene Extinction in Early Mammalian Evolution, Genome Biology and Evolution, 3, 0, (1449), (2011).
- J. Bongard, Morphological change in machines accelerates the evolution of robust behavior, Proceedings of the National Academy of Sciences, 108, 4, (1234), (2011).
- Michel Morange, Evolutionary developmental biology its roots and characteristics, Developmental Biology, 357, 1, (13), (2011).
- Kirsten H. ten Tusscher, Paulien Hogeweg and Erik van Nimwegen, Evolution of Networks for Body Plan Patterning; Interplay of Modularity, Robustness and Evolvability, PLoS Computational Biology, 7, 10, (e1002208), (2011).
- N L Chamberlain, R I Hill, S W Baxter, C D Jiggins and M R Kronforst, Comparative population genetics of a mimicry locus among hybridizing Heliconius butterfly species, Heredity, 107, 3, (200), (2011).
- Bruce H. Weber, Extending and expanding the Darwinian synthesis: the role of complex systems dynamics, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 42, 1, (75), (2011).
- Xiaoyue Wang, Ralf J. Sommer and Paul W. Sternberg, Antagonism of LIN-17/Frizzled and LIN-18/Ryk in Nematode Vulva Induction Reveals Evolutionary Alterations in Core Developmental Pathways, PLoS Biology, 9, 7, (e1001110), (2011).
- Madelaine E. Bartlett and Chelsea D. Specht, Changes in expression pattern of the teosinte branched1‐like genes in the Zingiberales provide a mechanism for evolutionary shifts in symmetry across the order, American Journal of Botany, 98, 2, (227-243), (2011).
- Kerry L. Shaw and Sean P. Mullen, Genes versus phenotypes in the study of speciation, Genetica, 139, 5, (649), (2011).
- Austin L. Hughes and Robert Friedman, Myths and Realities of Gene Duplication, Evolution after Gene Duplication, (77-103), (2011).
- S. Lavoue, M. Miya, M. E. Arnegard, P. B. McIntyre, V. Mamonekene and M. Nishida, Remarkable morphological stasis in an extant vertebrate despite tens of millions of years of divergence, Proceedings of the Royal Society B: Biological Sciences, 278, 1708, (1003), (2011).
- C. Scharff and J. Petri, Evo-devo, deep homology and FoxP2: implications for the evolution of speech and language, Philosophical Transactions of the Royal Society B: Biological Sciences, 366, 1574, (2124), (2011).
- David J. Depew and Bruce H. Weber, The Fate of Darwinism: Evolution After the Modern Synthesis, Biological Theory, 6, 1, (89), (2011).
- Yong E. Zhang, Patrick Landback, Maria D. Vibranovski, Manyuan Long and Kenneth H. Wolfe, Accelerated Recruitment of New Brain Development Genes into the Human Genome, PLoS Biology, 9, 10, (e1001179), (2011).
- S. H. Montgomery, I. Capellini, C. Venditti, R. A. Barton and N. I. Mundy, Adaptive Evolution of Four Microcephaly Genes and the Evolution of Brain Size in Anthropoid Primates, Molecular Biology and Evolution, 28, 1, (625), (2011).
- Chris L. Organ and Scott V. Edwards, Major Events in Avian Genome Evolution, Living Dinosaurs, (325-337), (2011).
- S. Reimers-Kipping, W. Hevers, S. Pääbo and W. Enard, Humanized Foxp2 specifically affects cortico-basal ganglia circuits, Neuroscience, 10.1016/j.neuroscience.2010.11.042, 175, (75-84), (2011).
- Athanasia C. Tzika, Raphaël Helaers and Michel C. Milinkovitch, Mapping Gene Gains and Losses Among Metazoan Full Genomes Using an Integrated Phylogenetic Framework, Evolution after Gene Duplication, (173-184), (2011).
- Dustin J. Marshall and Steven G. Morgan, Ecological and Evolutionary Consequences of Linked Life-History Stages in the Sea, Current Biology, 21, 18, (R718), (2011).
- Kentaro K. Shimizu, Hiroshi Kudoh and Masaki J. Kobayashi, Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology, Annals of Botany, 108, 4, (777), (2011).
- Ted Cosart, Albano Beja-Pereira, Shanyuan Chen, Sarah B Ng, Jay Shendure and Gordon Luikart, Exome-wide DNA capture and next generation sequencing in domestic and wild species, BMC Genomics, 12, 1, (2011).
- Li Wang, Fang-Fang Wang and Wei Qian, Evolutionary rewiring and reprogramming of bacterial transcription regulation, Journal of Genetics and Genomics, 38, 7, (279), (2011).
- Dan Xie, Chieh-Chun Chen, Xin He, Xiaoyi Cao, Sheng Zhong and Amos Tanay, Towards an Evolutionary Model of Transcription Networks, PLoS Computational Biology, 7, 6, (e1002064), (2011).
- Camilla M. Gomes, Tiana Kohlsdorf and Vincent Laudet, Evolution of Sexual Dimorphism in the Digit Ratio 2D:4D - Relationships with Body Size and Microhabitat Use in Iguanian Lizards, PLoS ONE, 6, 12, (e28465), (2011).
- Balázs Papp, Richard A. Notebaart and Csaba Pál, Systems-biology approaches for predicting genomic evolution, Nature Reviews Genetics, 10.1038/nrg3033, 12, 9, (591-602), (2011).
- D. B. Wake, M. H. Wake and C. D. Specht, Homoplasy: From Detecting Pattern to Determining Process and Mechanism of Evolution, Science, 331, 6020, (1032), (2011).
- Rinaldo C. Bertossa, Morphology and behaviour: functional links in development and evolution, Philosophical Transactions of the Royal Society B: Biological Sciences, 366, 1574, (2056), (2011).
- P. M. Brakefield, Evo-devo and accounting for Darwin's endless forms, Philosophical Transactions of the Royal Society B: Biological Sciences, 366, 1574, (2069), (2011).
- R S Baucom, S-M Chang, J M Kniskern, M D Rausher and J R Stinchcombe, Morning glory as a powerful model in ecological genomics: tracing adaptation through both natural and artificial selection, Heredity, 10.1038/hdy.2011.25, 107, 5, (377-385), (2011).
- DONNA M. TOLENO, MARY L. DURBIN, KAREN E. LUNDY and MICHAEL T. CLEGG, Extensive evolutionary rate variation in floral color determining genes in the genus Ipomoea, Plant Species Biology, 25, 1, (30-42), (2010).
- BRANDI SIGMON and ERIK VOLLBRECHT, Evidence of selection at the ramosa1 locus during maize domestication, Molecular Ecology, 19, 7, (1296-1311), (2010).
- K. L. CARLETON, C. M. HOFMANN, C. KLISZ, Z. PATEL, L. M. CHIRCUS, L. H. SIMENAUER, N. SOODOO, R. C. ALBERTSON and J. R. SER, Genetic basis of differential opsin gene expression in cichlid fishes, Journal of Evolutionary Biology, 23, 4, (840-853), (2010).
- Miriam Liedvogel and Ben C. Sheldon, Low variability and absence of phenotypic correlates of Clock gene variation in a great tit Parus major population, Journal of Avian Biology, 41, 5, (543-550), (2010).
- JULIE JEUKENS, SÉBASTIEN RENAUT, JÉRÔME ST‐CYR, ARNE W. NOLTE and LOUIS BERNATCHEZ, The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next‐generation sequencing, Molecular Ecology, 19, 24, (5389-5403), (2010).
- Fabian Staubach, Meike Teschke, Christian R. Voolstra, Jochen B. W. Wolf and Diethard Tautz, A TEST OF THE NEUTRAL MODEL OF EXPRESSION CHANGE IN NATURAL POPULATIONS OF HOUSE MOUSE SUBSPECIES, Evolution, 64, 2, (549-560), (2009).
- PIERRE FONTANILLAS, CHRISTIAN R. LANDRY, PATRICIA J. WITTKOPP, CARSTEN RUSS, JONATHAN D. GRUBER, CHAD NUSBAUM and DANIEL L. HARTL, Key considerations for measuring allelic expression on a genomic scale using high‐throughput sequencing, Molecular Ecology, 19, (212-227), (2010).
- JOCHEN B. W. WOLF, TILL BAYER, BERNHARD HAUBOLD, MARKUS SCHILHABEL, PHILIP ROSENSTIEL and DIETHARD TAUTZ, Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow, Molecular Ecology, 19, (162-175), (2010).
- Julie C. Kiefer, Primer and interviews: Molecular mechanisms of morphological evolution, Developmental Dynamics, 239, 12, (3497-3505), (2010).
- B. G. Hunt and M. A. D. Goodisman, Evolutionary variation in gene expression is associated with dimorphism in eusocial vespid wasps, Insect Molecular Biology, 19, 5, (641-652), (2010).
- Niclas Backström, Johan Lindell, Yu Zhang, Eleftheria Palkopoulou, Anna Qvarnström, Glenn‐Peter Sætre and Hans Ellegren, A HIGH‐DENSITY SCAN OF THE Z CHROMOSOME IN FICEDULA FLYCATCHERS REVEALS CANDIDATE LOCI FOR DIVERSIFYING SELECTION, Evolution, 64, 12, (3461-3475), (2010).
- Leonie C. Moyle and Christopher D. Muir, Reciprocal insights into adaptation from agricultural and evolutionary studies in tomato, Evolutionary Applications, 3, 5‐6, (409-421), (2010).
- Leonhard Schmid and Marcelo R. Sánchez‐Villagra, Potential genetic bases of morphological evolution in the triassic fish Saurichthys, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 314B, 7, (519-526), (2010).
- Vincent Laudet, Adaptive Diversity: Hormones and Metabolism in Freshwaters, Current Biology, 20, 23, (R1016), (2010).
- A. Heffer, J. W. Shultz and L. Pick, Surprising flexibility in a conserved Hox transcription factor over 550 million years of evolution, Proceedings of the National Academy of Sciences, 107, 42, (18040), (2010).
- KATIE J. CLOWERS, RICHARD F. LYMAN, TRUDY F. C. MACKAY and THEODORE J. MORGAN, Genetic variation in senescence marker protein-30 is associated with natural variation in cold tolerance in Drosophila, Genetics Research, 92, 02, (103), (2010).
- Lindsay R. Craig, The So-Called Extended Synthesis and Population Genetics, Biological Theory, 5, 2, (117), (2010).
- Ingo Brigandt and Alan C. Love, Evolutionary Novelty and the Evo-Devo Synthesis: Field Notes, Evolutionary Biology, 37, 2-3, (93), (2010).
- J.E. Leonard and C.R.B. Boake, Microevolution and Macroevolution in Behavior, Encyclopedia of Animal Behavior, 10.1016/B978-0-08-045337-8.00114-5, (449-454), (2010).
- Daniel F. Jarosz, Mikko Taipale and Susan Lindquist, Protein Homeostasis and the Phenotypic Manifestation of Genetic Diversity: Principles and Mechanisms, Annual Review of Genetics, 44, 1, (189), (2010).
- Anastasia Thanukos, Communicating Evolution as Science, Evolution: Education and Outreach, 3, 2, (254), (2010).
- SUZY C. P. RENN and DAVID H. SIEMENS, Ecological genomics-changing perspectives on Darwin’s basic concerns, Molecular Ecology, 19, 15, (3025), (2010).
- David W. Loehlin, Deodoro C. S. G. Oliveira, Rachel Edwards, Jonathan D. Giebel, Michael E. Clark, M. Victoria Cattani, Louis van de Zande, Eveline C. Verhulst, Leo W. Beukeboom, Monica Muñoz-Torres, John H. Werren and David L. Stern, Non-Coding Changes Cause Sex-Specific Wing Size Differences between Closely Related Species of Nasonia, PLoS Genetics, 6, 1, (e1000821), (2010).
- Ralph Haygood, Courtney C. Babbitt, Olivier Fedrigo and Gregory A. Wray, Contrasts between adaptive coding and noncoding changes during human evolution, Proceedings of the National Academy of Sciences, 107, 17, (7853), (2010).
- Adam M. Reitzel, James C. Sullivan and John R. Finnerty, Discovering SNPs in Protein Coding Regions with StellaSNP: Illustrating the Characterization and Geographic Distribution of Polymorphisms in the Estuarine Anemone Nematostella vectensis, Estuaries and Coasts, 33, 4, (930), (2010).
- C.M. Grozinger and G.E. Robinson, Sociogenomics, Encyclopedia of Animal Behavior, 10.1016/B978-0-08-045337-8.00160-1, (281-285), (2010).
- Günter P. Wagner and Vincent J. Lynch, Evolutionary novelties, Current Biology, 20, 2, (R48), (2010).
- J. H. Bullard, Y. Mostovoy, S. Dudoit and R. B. Brem, Polygenic and directional regulatory evolution across pathways in Saccharomyces, Proceedings of the National Academy of Sciences, 107, 11, (5058), (2010).
- D W Loehlin, L S Enders and J H Werren, Evolution of sex-specific wing shape at the widerwing locus in four species of Nasonia, Heredity, 104, 3, (260), (2010).
- Y. F. Chan, M. E. Marks, F. C. Jones, G. Villarreal, M. D. Shapiro, S. D. Brady, A. M. Southwick, D. M. Absher, J. Grimwood, J. Schmutz, R. M. Myers, D. Petrov, B. Jonsson, D. Schluter, M. A. Bell and D. M. Kingsley, Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer, Science, 327, 5963, (302), (2010).
- K. Nowick and L. Stubbs, Lineage-specific transcription factors and the evolution of gene regulatory networks, Briefings in Functional Genomics, 10.1093/bfgp/elp056, 9, 1, (65-78), (2010).
- Lennart Olsson, Georgy S. Levit and Uwe Hoßfeld, Evolutionary developmental biology: its concepts and history with a focus on Russian and German contributions, Naturwissenschaften, 97, 11, (951), (2010).
- J. M. Akey, A. L. Ruhe, D. T. Akey, A. K. Wong, C. F. Connelly, J. Madeoy, T. J. Nicholas and M. W. Neff, Tracking footprints of artificial selection in the dog genome, Proceedings of the National Academy of Sciences, 107, 3, (1160), (2010).
- M. Manceau, V. S. Domingues, C. R. Linnen, E. B. Rosenblum and H. E. Hoekstra, Convergence in pigmentation at multiple levels: mutations, genes and function, Philosophical Transactions of the Royal Society B: Biological Sciences, 365, 1552, (2439), (2010).
- Joshua M. Schmidt, Robert T. Good, Belinda Appleton, Jayne Sherrard, Greta C. Raymant, Michael R. Bogwitz, Jon Martin, Phillip J. Daborn, Mike E. Goddard, Philip Batterham, Charles Robin and David J. Begun, Copy Number Variation and Transposable Elements Feature in Recent, Ongoing Adaptation at the Cyp6g1 Locus, PLoS Genetics, 6, 6, (e1000998), (2010).
- Kenneth M. Weiss and Anne V. Buchanan, Evolution: What it Means and How we Know, A Companion to Biological Anthropology, (41-55), (2010).
- T. Lappalainen and E. T. Dermitzakis, Evolutionary history of regulatory variation in human populations, Human Molecular Genetics, 19, R2, (R197), (2010).
- Jon Slate, Anna W. Santure, Philine G.D. Feulner, Emily A. Brown, Alex D. Ball, Susan E. Johnston and Jake Gratten, Genome mapping in intensively studied wild vertebrate populations, Trends in Genetics, 26, 6, (275), (2010).
- Nicola J. Nadeau and Chris D. Jiggins, A golden age for evolutionary genetics? Genomic studies of adaptation in natural populations, Trends in Genetics, 26, 11, (484), (2010).
- E. M. Kramer and S. A. Hodges, Aquilegia as a model system for the evolution and ecology of petals, Philosophical Transactions of the Royal Society B: Biological Sciences, 365, 1539, (477), (2010).
- Arnaud Martin, Durrell D. Kapan, Lawrence E. Gilbert and Michael W. Nachman, Wing Patterns in the Mist, PLoS Genetics, 6, 2, (e1000822), (2010).
- B.-Y. Liao, M.-P. Weng and J. Zhang, Contrasting genetic paths to morphological and physiological evolution, Proceedings of the National Academy of Sciences, 107, 16, (7353), (2010).
- K. A. Hughes, More than one way to blanch a lizard, Proceedings of the National Academy of Sciences, 107, 5, (1815), (2010).
- C. A. Airoldi, S. Bergonzi and B. Davies, Single amino acid change alters the ability to specify male or female organ identity, Proceedings of the National Academy of Sciences, 107, 44, (18898), (2010).
- M. C. Milinkovitch, R. Helaers and A. C. Tzika, Historical Constraints on Vertebrate Genome Evolution, Genome Biology and Evolution, 2, 0, (13), (2010).
- J. J. Emerson and W.-H. Li, The genetic basis of evolutionary change in gene expression levels, Philosophical Transactions of the Royal Society B: Biological Sciences, 365, 1552, (2581), (2010).
- Molly K. Burke, Joseph P. Dunham, Parvin Shahrestani, Kevin R. Thornton, Michael R. Rose and Anthony D. Long, Genome-wide analysis of a long-term evolution experiment with Drosophila, Nature, 467, 7315, (587), (2010).
- H. B. Fraser, A. M. Moses and E. E. Schadt, Evidence for widespread adaptive evolution of gene expression in budding yeast, Proceedings of the National Academy of Sciences, 107, 7, (2977), (2010).
- Samuel J. Sholtis and James P. Noonan, Gene regulation and the origins of human biological uniqueness, Trends in Genetics, 26, 3, (110), (2010).
- T. H. Jorgensen and B. C. Emerson, RPW8 and resistance to powdery mildew pathogens in natural populations of Arabidopsis lyrata, New Phytologist, 182, 4, (984-993), (2009).
- David B. Lowry, Megan C. Hall, David E. Salt and John H. Willis, Genetic and physiological basis of adaptive salt tolerance divergence between coastal and inland Mimulus guttatus, New Phytologist, 183, 3, (776-788), (2009).
- J. GALINDO, P. MORÁN and E. ROLÁN‐ALVAREZ, Comparing geographical genetic differentiation between candidate and noncandidate loci for adaptation strengthens support for parallel ecological divergence in the marine snail Littorina saxatilis, Molecular Ecology, 18, 5, (919-930), (2009).
- Isabell Karl, Thomas Schmitt and Klaus Fischer, Genetic differentiation between alpine and lowland populations of a butterfly is related to PGI enzyme genotype, Ecography, 32, 3, (488-496), (2009).
- Rebecca F. Spokony and Linda L. Restifo, Broad complex isoforms have unique distributions during central nervous system metamorphosis in Drosophila melanogaster, Journal of Comparative Neurology, 517, 1, (15-36), (2009).
- Xinjun He, Johann K. Eberhart and John H. Postlethwait, MicroRNAs and micromanaging the skeleton in disease, development and evolution, Journal of Cellular and Molecular Medicine, 13, 4, (606-618), (2009).
- Michael E. Palmer and Marcus W. Feldman, DYNAMICS OF HYBRID INCOMPATIBILITY IN GENE NETWORKS IN A CONSTANT ENVIRONMENT, Evolution, 63, 2, (418-431), (2008).
- WALTER SALZBURGER, The interaction of sexually and naturally selected traits in the adaptive radiations of cichlid fishes, Molecular Ecology, 18, 2, (169-185), (2008).
- Lisa M. Goering, Priscilla K. Hunt, Cassandra Heighington, Christopher Busick, Pleuni Pennings, Joachim Hermisson, Sudhir Kumar and Greg Gibson, Association of orthodenticle with natural variation for early embryonic patterning in Drosophila melanogaster, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 312B, 8, (841-854), (2009).
- F. Ali and R. Meier, Primate home range and GRIN2A, a receptor gene involved in neuronal plasticity: implications for the evolution of spatial memory, Genes, Brain and Behavior, 8, 4, (435-441), (2009).
- Willemijn M. Gommans, Sean P. Mullen and Stefan Maas, RNA editing: a driving force for adaptive evolution?, BioEssays, 31, 10, (1137-1145), (2009).
- Thierry K. S. Janssens, Dick Roelofs and Nico M. Van Straalen, Molecular mechanisms of heavy metal tolerance and evolution in invertebrates, Insect Science, 16, 1, (3-18), (2009).
- Geneviève M. Bilodeau, Helga Guderley, Denis R. Joanisse and Theodore Garland, Reduction of type IIb myosin and IIB fibers in tibialis anterior muscle of mini‐muscle mice from high‐activity lines, Journal of Experimental Zoology Part A: Ecological Genetics and Physiology, 311A, 3, (189-198), (2009).
- Antje H. L. Fischer, Enrique Arboleda, Bernhard Egger, Maarten Hilbrant, Alistair P. McGregor, Alison G. Cole and Allison C. Daley, ZOONET: perspectives on the evolution of animal form. Meeting report, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 312B, 7, (679-685), (2009).
- Rees Kassen, Toward a General Theory of Adaptive Radiation, Annals of the New York Academy of Sciences, 1168, 1, (3-22), (2009).
- Kevin J. Parsons and R. Craig Albertson, Roles for Bmp4 and CaM1 in Shaping the Jaw: Evo-Devo and Beyond, Annual Review of Genetics, 10.1146/annurev-genet-102808-114917, 43, 1, (369-388), (2009).
- Richard Jovelin, Rapid Sequence Evolution of Transcription Factors Controlling Neuron Differentiation in Caenorhabditis, Molecular Biology and Evolution, 26, 10, (2373), (2009).
- Matthew A. Streisfeld and Mark D. Rausher, Altered trans-Regulatory Control of Gene Expression in Multiple Anthocyanin Genes Contributes to Adaptive Flower Color Evolution in Mimulus aurantiacus, Molecular Biology and Evolution, 26, 2, (433), (2009).
- M. W. Hart and R. K. Grosberg, Caterpillars did not evolve from onychophorans by hybridogenesis, Proceedings of the National Academy of Sciences, 106, 47, (19906), (2009).
- J. Rock, J.L. Magnay, S. Beech, A.J. El Haj, G. Goldspink, D.H. Lunt and N.M. Whiteley, Linking functional molecular variation with environmental gradients: Myosin gene diversity in a crustacean broadly distributed across variable thermal environments, Gene, 437, 1-2, (60), (2009).
- S. E. Osborne, D. Walthers, A. M. Tomljenovic, D. T. Mulder, U. Silphaduang, N. Duong, M. J. Lowden, M. E. Wickham, R. F. Waller, L. J. Kenney and B. K. Coombes, Pathogenic adaptation of intracellular bacteria by rewiring a cis-regulatory input function, Proceedings of the National Academy of Sciences, 106, 10, (3982), (2009).
- Florian Maderspacher, Evolution: Mirror, Mirror in the Pond, Current Biology, 19, 19, (R902), (2009).
- Joost M. Woltering, Freek J. Vonk, Hendrik Müller, Nabila Bardine, Ioana L. Tuduce, Merijn A.G. de Bakker, Walter Knöchel, I. Ovidiu Sirbu, Antony J. Durston and Michael K. Richardson, Axial patterning in snakes and caecilians: Evidence for an alternative interpretation of the Hox code, Developmental Biology, 332, 1, (82), (2009).
- Nicolas Rohner, Miklós Bercsényi, László Orbán, Maria E. Kolanczyk, Dirk Linke, Michael Brand, Christiane Nüsslein-Volhard and Matthew P. Harris, Duplication of fgfr1 Permits Fgf Signaling to Serve as a Target for Selection during Domestication, Current Biology, 19, 19, (1642), (2009).
- H. Lisle Gibbs, Libia Sanz and Juan J. Calvete, Snake Population Venomics: Proteomics-Based Analyses of Individual Variation Reveals Significant Gene Regulation Effects on Venom Protein Expression in Sistrurus Rattlesnakes, Journal of Molecular Evolution, 10.1007/s00239-008-9186-1, 68, 2, (113-125), (2009).
- S. A. Hodges and N. J. Derieg, Adaptive radiations: From field to genomic studies, Proceedings of the National Academy of Sciences, 106, Supplement_1, (9947), (2009).
- Yoav Gilad, Jonathan K. Pritchard and Kevin Thornton, Characterizing natural variation using next-generation sequencing technologies, Trends in Genetics, 25, 10, (463), (2009).
- A. R. Brown, D. J. Hosken, F. Balloux, L. K. Bickley, G. LePage, S. F. Owen, M. J. Hetheridge and C. R. Tyler, Genetic variation, inbreeding and chemical exposure--combined effects in wildlife and critical considerations for ecotoxicology, Philosophical Transactions of the Royal Society B: Biological Sciences, 10.1098/rstb.2009.0126, 364, 1534, (3377-3390), (2009).
- Eric S. Haag, Chapter 3 Caenorhabditis Nematodes as a Model for the Adaptive Evolution of Germ Cells, Evolution and Development, 10.1016/S0070-2153(09)01003-5, (43-66), (2009).
- Daniel R. Matute, Ian A. Butler and Jerry A. Coyne, Little Effect of the tan Locus on Pigmentation in Female Hybrids between Drosophila santomea and D. melanogaster, Cell, 139, 6, (1180), (2009).
- Michael D Wilson and Duncan T Odom, Evolution of transcriptional control in mammals, Current Opinion in Genetics & Development, 19, 6, (579), (2009).
- K. M. Brown, M. A. DePristo, D. M. Weinreich and D. L. Hartl, Temporal Constraints on the Incorporation of Regulatory Mutants in Evolutionary Pathways, Molecular Biology and Evolution, 26, 11, (2455), (2009).
- Francisco J. Ayala and Robert Arp, Part Introduction, Contemporary Debates in Philosophy of Biology, (195-198), (2009).
- Vijay G. Sankaran, Jian Xu, Tobias Ragoczy, Gregory C. Ippolito, Carl R. Walkley, Shanna D. Maika, Yuko Fujiwara, Masafumi Ito, Mark Groudine, M. A. Bender, Philip W. Tucker and Stuart H. Orkin, Developmental and species-divergent globin switching are driven by BCL11A, Nature, 460, 7259, (1093), (2009).
- Julia Hilscher, Christian Schlötterer and Marie-Theres Hauser, A Single Amino Acid Replacement in ETC2 Shapes Trichome Patterning in Natural Arabidopsis Populations, Current Biology, 19, 20, (1747), (2009).
- Michel Morange, Synthetic Biology: A Bridge Between Functional and Evolutionary Biology, Biological Theory, 4, 4, (368), (2009).
- Daniel A. Skelly, James Ronald and Joshua M. Akey, Inherited Variation in Gene Expression, Annual Review of Genomics and Human Genetics, 10, 1, (313), (2009).
- Pedro Beltrao, Jonathan C. Trinidad, Dorothea Fiedler, Assen Roguev, Wendell A. Lim, Kevan M. Shokat, Alma L. Burlingame, Nevan J. Krogan and Laurence D. Hurst, Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species, PLoS Biology, 7, 6, (e1000134), (2009).
- , Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species, Journal of Heredity, 100, 6, (659), (2009).
- John C. Larkin, Morphological Evolution: By Any Means Necessary?, Current Biology, 19, 20, (R953), (2009).
- Ralf J. Sommer, The future of evo–devo: model systems and evolutionary theory, Nature Reviews Genetics, 10, 6, (416), (2009).
- J. Gerke, K. Lorenz and B. Cohen, Genetic Interactions Between Transcription Factors Cause Natural Variation in Yeast, Science, 323, 5913, (498), (2009).
- R. Johnson, J. Samuel, C. K. L. Ng, R. Jauch, L. W. Stanton and I. C. Wood, Evolution of the Vertebrate Gene Regulatory Network Controlled by the Transcriptional Repressor REST, Molecular Biology and Evolution, 26, 7, (1491), (2009).
- Kousuke Hanada, Takashi Kuromori, Fumiyoshi Myouga, Tetsuro Toyoda, Kazuo Shinozaki and Bruce Walsh, Increased Expression and Protein Divergence in Duplicate Genes Is Associated with Morphological Diversification, PLoS Genetics, 5, 12, (e1000781), (2009).
- Yukuto Sato and Mutsumi Nishida, Electric charge divergence in proteins: insights into the evolution of their three-dimensional properties, Gene, 441, 1-2, (3), (2009).
- Cécile Edelist, Xavier Raffoux, Matthieu Falque, Christine Dillmann, Delphine Sicard, Loren H. Rieseberg and Sophie Karrenberg, Differential expression of candidate salt‐tolerance genes in the halophyte Helianthus paradoxus and its glycophyte progenitors H. annuus and H. petiolaris (Asteraceae), American Journal of Botany, 96, 10, (1830-1838), (2009).
- J. Martin-Coello, H. Dopazo, L. Arbiza, J. Ausio, E. R.S. Roldan and M. Gomendio, Sexual selection drives weak positive selection in protamine genes and high promoter divergence, enhancing sperm competitiveness, Proceedings of the Royal Society B: Biological Sciences, 276, 1666, (2427), (2009).
- Trudy F. C. Mackay, Eric A. Stone and Julien F. Ayroles, The genetics of quantitative traits: challenges and prospects, Nature Reviews Genetics, 10, 8, (565), (2009).
- Margie A. Kinnersley, William E. Holben, Frank Rosenzweig and David S. Guttman, E Unibus Plurum: Genomic Analysis of an Experimentally Evolved Polymorphism in Escherichia coli, PLoS Genetics, 5, 11, (e1000713), (2009).
- H. Allen Orr, Fitness and its role in evolutionary genetics, Nature Reviews Genetics, 10, 8, (531), (2009).
- S. Renaut, A.W. Nolte and L. Bernatchez, Gene Expression Divergence and Hybrid Misexpression between Lake Whitefish Species Pairs (Coregonus spp. Salmonidae), Molecular Biology and Evolution, 26, 4, (925), (2009).
- Heather Ramsay, Loren H. Rieseberg and Kermit Ritland, The Correlation of Evolutionary Rate with Pathway Position in Plant Terpenoid Biosynthesis, Molecular Biology and Evolution, 26, 5, (1045), (2009).
- Kerry A Naish and Jeffrey J Hard, Bridging the gap between the genotype and the phenotype: linking genetic variation, selection and adaptation in fishes, Fish and Fisheries, 9, 4, (396-422), (2008).
- J. ST‐CYR, N. DEROME and L. BERNATCHEZ, The transcriptomics of life‐history trade‐offs in whitefish species pairs (Coregonus sp.), Molecular Ecology, 17, 7, (1850-1870), (2008).
- KENTARO K. SHIMIZU, RIE SHIMIZU‐INATSUGI, TAKASHI TSUCHIMATSU and MICHAEL D. PURUGGANAN, Independent origins of self‐compatibility in Arabidopsis thaliana, Molecular Ecology, 17, 2, (704-714), (2007).
- HANS ELLEGREN, Comparative genomics and the study of evolution by natural selection, Molecular Ecology, 17, 21, (4586-4596), (2008).
- JEREMY M. BONO, LUCIANO M. MATZKIN, SERGIO CASTREZANA and THERESE A. MARKOW, Molecular evolution and population genetics of two Drosophila mettleri cytochrome P450 genes involved in host plant utilization, Molecular Ecology, 17, 13, (3211-3221), (2008).
- Isabelle Boutet, Nolwenn Quéré, Frédéric Lecomte, Jean‐François Agnèse and Bruno Guinand, Putative transcription factor binding sites and polymorphisms in the proximal promoter of the PRL‐A gene in percomorphs and European sea bass (Dicentrarchus labrax), Marine Ecology, 29, 3, (354-364), (2008).
- Eugene E. Harris, Searching the genome for our adaptations, "Evolutionary Anthropology: Issues, News, and Reviews", 17, 3, (146-157), (2008).
- David L. Stern and Virginie Orgogozo, THE LOCI OF EVOLUTION: HOW PREDICTABLE IS GENETIC EVOLUTION?, Evolution, 62, 9, (2155-2177), (2008).
- Vincent J. Lynch and Günter P. Wagner, RESURRECTING THE ROLE OF TRANSCRIPTION FACTOR CHANGE IN DEVELOPMENTAL EVOLUTION, Evolution, 62, 9, (2131-2154), (2008).
- Reiner A. Veitia, One thousand and one ways of making functionally similar transcriptional enhancers, BioEssays, 30, 11‐12, (1052-1057), (2008).
- Austin L. Hughes, Near Neutrality, Annals of the New York Academy of Sciences, 1133, 1, (162-179), (2008).
- Jerry A. Coyne, Emily H. Kay and Stephen Pruett‐Jones, THE GENETIC BASIS OF SEXUAL DIMORPHISM IN BIRDS, Evolution, 62, 1, (214-219), (2007).
- James D. Fry, Kathy Donlon and Molly Saweikis, A WORLDWIDE POLYMORPHISM IN ALDEHYDE DEHYDROGENASE IN DROSOPHILA MELANOGASTER: EVIDENCE FOR SELECTION MEDIATED BY DIETARY ETHANOL, Evolution, 62, 1, (66-75), (2007).
- H. Lisle Gibbs and Wayne Rossiter, Rapid Evolution by Positive Selection and Gene Gain and Loss: PLA2 Venom Genes in Closely Related Sistrurus Rattlesnakes with Divergent Diets, Journal of Molecular Evolution, 66, 2, (151), (2008).
- Sophie Pantalacci, Arnaud Chaumot, Gérard Benoît, Alexa Sadier, Frédéric Delsuc, Emmanuel J. P. Douzery and Vincent Laudet, Conserved Features and Evolutionary Shifts of the EDA Signaling Pathway Involved in Vertebrate Skin Appendage Development, Molecular Biology and Evolution, 25, 5, (912), (2008).
- Marc Hanikenne, Ina N. Talke, Michael J. Haydon, Christa Lanz, Andrea Nolte, Patrick Motte, Juergen Kroymann, Detlef Weigel and Ute Krämer, Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4, Nature, 453, 7193, (391), (2008).
- Chiou-Ju Yao, Tadasu K. Yamada, Yen-Jean Chen and Lien-Siang Chou, Cranial Variation in the Pantropical Spotted Dolphin, Stenella attenuata, in the Pacific Ocean, Zoological Science, 10.2108/zsj.25.1234, 25, 12, (1234-1246), (2008).
- C. J. Schneider, Exploiting genomic resources in studies of speciation and adaptive radiation of lizards in the genus Anolis, Integrative and Comparative Biology, 48, 4, (520), (2008).
- Sophie Karrenberg and Alex Widmer, Ecologically relevant genetic variation from a non-Arabidopsis perspective, Current Opinion in Plant Biology, 10.1016/j.pbi.2008.01.004, 11, 2, (156-162), (2008).
- Günter P. Wagner and Vincent J. Lynch, The gene regulatory logic of transcription factor evolution, Trends in Ecology & Evolution, 23, 7, (377), (2008).
- Justin Crocker, Albert Erives and Norbert Perrimon, A Closer Look at the eve Stripe 2 Enhancers of Drosophila and Themira, PLoS Genetics, 4, 11, (e1000276), (2008).
- B.-Y. Liao and J. Zhang, Null mutations in human and mouse orthologs frequently result in different phenotypes, Proceedings of the National Academy of Sciences, 105, 19, (6987), (2008).
- Meredith E. Protas and Nipam H. Patel, Evolution of Coloration Patterns, Annual Review of Cell and Developmental Biology, 24, 1, (425), (2008).
- Brett Calcott, Duygu Balcan, Paul A. Hohenlohe and Andrea Califano, A Publish-Subscribe Model of Genetic Networks, PLoS ONE, 3, 9, (e3245), (2008).
- Suvi K. Broholm, Sari Tähtiharju, Roosa A. E. Laitinen, Victor A. Albert, Teemu H. Teeri and Paula Elomaa, A TCP domain transcription factor controls flower type specification along the radial axis of theGerbera(Asteraceae) inflorescence, Proceedings of the National Academy of Sciences, 105, 26, (9117), (2008).
- Daniel J. Catron, Mohamed A. F. Noor and Adam K. Chippindale, Gene Expression Disruptions of Organism versus Organ in Drosophila Species Hybrids, PLoS ONE, 3, 8, (e3009), (2008).
- Ronald Koes, Evolution and development of virtual inflorescences, Trends in Plant Science, 13, 1, (1), (2008).
- M. D. Wilson, N. L. Barbosa-Morais, D. Schmidt, C. M. Conboy, L. Vanes, V. L. J. Tybulewicz, E. M. C. Fisher, S. Tavare and D. T. Odom, Species-Specific Transcription in Mice Carrying Human Chromosome 21, Science, 322, 5900, (434), (2008).
- James F. Crow, Mid-Century Controversies in Population Genetics, Annual Review of Genetics, 42, 1, (1), (2008).
- S. Kudaravalli, J.-B. Veyrieras, B. E. Stranger, E. T. Dermitzakis and J. K. Pritchard, Gene Expression Levels Are a Target of Recent Natural Selection in the Human Genome, Molecular Biology and Evolution, 26, 3, (649), (2008).
- Hans Ellegren and Ben C. Sheldon, Genetic basis of fitness differences in natural populations, Nature, 452, 7184, (169), (2008).
- Sangyun Jeong, Mark Rebeiz, Peter Andolfatto, Thomas Werner, John True and Sean B. Carroll, The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species, Cell, 132, 5, (783), (2008).
- Sean B. Carroll, Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution, Cell, 134, 1, (25), (2008).
- Andrew J. Pask, Richard R. Behringer, Marilyn B. Renfree and Erik I. Svensson, Resurrection of DNA Function In Vivo from an Extinct Genome, PLoS ONE, 3, 5, (e2240), (2008).
- Amanda M. Larracuente, Timothy B. Sackton, Anthony J. Greenberg, Alex Wong, Nadia D. Singh, David Sturgill, Yu Zhang, Brian Oliver and Andrew G. Clark, Evolution of protein-coding genes in Drosophila, Trends in Genetics, 24, 3, (114), (2008).
- Riccardo Papa, Arnaud Martin and Robert D Reed, Genomic hotspots of adaptation in butterfly wing pattern evolution, Current Opinion in Genetics & Development, 18, 6, (559), (2008).
- Barbara Rosati, Min Dong, Lan Cheng, Shian-Ren Liou, Qinghong Yan, Ji Young Park, Elaine Shiang, Michael Sanguinetti, Hong-Sheng Wang and David McKinnon, Evolution of ventricular myocyte electrophysiology, Physiological Genomics, 35, 3, (262), (2008).
- John Whitfield, Biological theory: Postmodern evolution?, Nature, 455, 7211, (281), (2008).
- Arhat Abzhanov, Cassandra G. Extavour, Andrew Groover, Scott A. Hodges, Hopi E. Hoekstra, Elena M. Kramer and Antonia Monteiro, Are we there yet? Tracking the development of new model systems, Trends in Genetics, 24, 7, (353), (2008).
- E.M. De Robertis, Evo-Devo: Variations on Ancestral Themes, Cell, 132, 2, (185), (2008).
- Richard R Copley, The animal in the genome: comparative genomics and evolution, Philosophical Transactions of the Royal Society B: Biological Sciences, 363, 1496, (1453), (2008).
- A L Hughes, Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level, Heredity, 99, 4, (364), (2007).
- Thomas Mitchell-Olds, John H. Willis and David B. Goldstein, Which evolutionary processes influence natural genetic variation for phenotypic traits?, Nature Reviews Genetics, 8, 11, (845), (2007).
- Jerry A. Coyne and Hopi E. Hoekstra, Evolution of Protein Expression: New Genes for a New Diet, Current Biology, 17, 23, (R1014), (2007).
- Antony M. Dean and Joseph W. Thornton, Mechanistic approaches to the study of evolution: the functional synthesis, Nature Reviews Genetics, 8, 9, (675), (2007).
- David C. Plachetzki, Bernard M. Degnan, Todd H. Oakley and Berend Snel, The Origins of Novel Protein Interactions during Animal Opsin Evolution, PLoS ONE, 2, 10, (e1054), (2007).
- Michael Lynch, The evolution of genetic networks by non-adaptive processes, Nature Reviews Genetics, 8, 10, (803), (2007).
- Janette W. Boughman, Sticklebacks and Humans Walk Hand in Fin to Lighter Skin, Cell, 131, 6, (1041), (2007).
- Anil G Jegga and Bruce J Aronow, Evolutionarily Conserved Noncoding DNA , eLS, (2013).
- Richard Jovelin, Evolution of Transcription Factors in Caenorhabditis, eLS, (2012).
- Ryan D Bickel and Jennifer A Brisson, Evolution of Development, eLS, (2011).
- Silvia Argimón, Alexander V. Alekseyenko, Rob DeSalle, Page W. Caufield and Bernard Beall, Phylogenetic Analysis of Glucosyltransferases and Implications for the Coevolution of Mutans Streptococci with Their Mammalian Hosts, PLoS ONE, 10.1371/journal.pone.0056305, 8, 2, (e56305), (2013).
- Shilpa Nadimpalli, Anton V. Persikov, Mona Singh and Jason D. Lieb, Pervasive Variation of Transcription Factor Orthologs Contributes to Regulatory Network Evolution, PLOS Genetics, 10.1371/journal.pgen.1005011, 11, 3, (e1005011), (2015).
- Michael W. Guernsey, Lars Ritscher, Matthew A. Miller, Daniel A. Smith, Torsten Schöneberg, Michael D. Shapiro and David Caramelli, A Val85Met Mutation in Melanocortin-1 Receptor Is Associated with Reductions in Eumelanic Pigmentation and Cell Surface Expression in Domestic Rock Pigeons (Columba livia), PLoS ONE, 10.1371/journal.pone.0074475, 8, 8, (e74475), (2013).
- Zoe R. Donaldson, Larry J. Young and Michael W. Nachman, The Relative Contribution of Proximal 5′ Flanking Sequence and Microsatellite Variation on Brain Vasopressin 1a Receptor (Avpr1a) Gene Expression and Behavior, PLoS Genetics, 10.1371/journal.pgen.1003729, 9, 8, (e1003729), (2013).
- Jordi Morata, Santi Béjar, David Talavera, Casandra Riera, Sergio Lois, Gemma Mas de Xaxars, Xavier de la Cruz and Gil Ast, The Relationship between Gene Isoform Multiplicity, Number of Exons and Protein Divergence, PLoS ONE, 10.1371/journal.pone.0072742, 8, 8, (e72742), (2013).
- Marc Hanikenne, Juergen Kroymann, Aleksandra Trampczynska, María Bernal, Patrick Motte, Stephan Clemens, Ute Krämer and Kirsten Bomblies, Hard Selective Sweep and Ectopic Gene Conversion in a Gene Cluster Affording Environmental Adaptation, PLoS Genetics, 10.1371/journal.pgen.1003707, 9, 8, (e1003707), (2013).
- H. Deborah Chen, Mollie W. Jewett, Eduardo A. Groisman and Diarmaid Hughes, An Allele of an Ancestral Transcription Factor Dependent on a Horizontally Acquired Gene Product, PLoS Genetics, 10.1371/journal.pgen.1003060, 8, 12, (e1003060), (2012).
- Christopher M. Hofmann, Kelly E. O'Quin, N. Justin Marshall, Thomas W. Cronin, Ole Seehausen, Karen L. Carleton and Mohamed A. F. Noor, The Eyes Have It: Regulatory and Structural Changes Both Underlie Cichlid Visual Pigment Diversity, PLoS Biology, 10.1371/journal.pbio.1000266, 7, 12, (e1000266), (2009).
- Ulises Rosas, Yu Mei, Qiguang Xie, Joshua A. Banta, Royce W. Zhou, Gabriela Seufferheld, Silvia Gerard, Lucy Chou, Naeha Bhambhra, Jennifer Deane Parks, Jonathan M. Flowers, C. Robertson McClung, Yoshie Hanzawa and Michael D. Purugganan, Variation in Arabidopsis flowering time associated with cis-regulatory variation in CONSTANS, Nature Communications, 10.1038/ncomms4651, 5, (2014).
- Daria Molodtsova, Brock A. Harpur, Clement F. Kent, Kajendra Seevananthan and Amro Zayed, Pleiotropy constrains the evolution of protein but not regulatory sequences in a transcription regulatory network influencing complex social behaviors, Frontiers in Genetics, 10.3389/fgene.2014.00431, 5, (2014).
- Kohta Yoshida, Asano Ishikawa, Atsushi Toyoda, Shuji Shigenobu, Asao Fujiyama and Jun Kitano, Functional divergence of a heterochromatin‐binding protein during stickleback speciation, Molecular Ecology, , (2018).
- Jungeui Hong, Nathan Brandt, Farah Abdul-Rahman, Ally Yang, Tim Hughes and David Gresham, An incoherent feedforward loop facilitates adaptive tuning of gene expression, eLife, 10.7554/eLife.32323, 7, (2018).
