Community‐level vs species‐specific approaches to model selection
The review and decision to publish this paper has been taken by the above noted SE.
The decision by the handling SE was shared by a second SE.
Abstract
A topic of particular current interest is community‐level approaches to species distribution modelling (SDM), i.e. approaches that simultaneously analyse distributional data for multiple species. Previous studies have looked at the advantages of community‐level approaches for parameter estimation, but not for model selection – the process of choosing which model (and in particular, which subset of environmental variables) to fit to data. We compared the predictive performance of models using the same modelling method (generalised linear models) but choosing the subset of variables to include in the model either simultaneously across all species (community‐level model selection) or separately for each species (species‐specific model selection). Our results across two large presence/absence tree community datasets were inconclusive as to whether there was an overall difference in predictive performance between models fitted via species‐specific vs community‐level model selection. However, we found some evidence that a community approach was best suited to modelling rare species, and its performance decayed with increasing prevalence. That is, when data were sparse there was more opportunity for gains from “borrowing strength” across species via a community‐level approach. Interestingly, we also found that the community‐level approach tended to work better when the model selection problem was more difficult, and more reliably detected “noise” variables that should be excluded from the model.
Number of times cited according to CrossRef: 17
- Diego Nieto‐Lugilde, Kaitlin C. Maguire, Jessica L. Blois, John W. Williams and Matthew C. Fitzpatrick, Multiresponse algorithms for community‐level modelling: Review of theory, applications, and comparison to species distribution models, Methods in Ecology and Evolution, 9, 4, (834-848), (2017).
- Jorge Assis, Miguel B. Araújo and Ester A. Serrão, Projected climate changes threaten ancient refugia of kelp forests in the North Atlantic, Global Change Biology, 24, 1, (e55-e66), (2017).
- Kua Rittiboon and Phattrawan Tongkumchum, Using linear regression to measure bird abundance, Environment, Development and Sustainability, 19, 3, (1003), (2017).
- Babak Naimi and Miguel B. Araújo, sdm: a reproducible and extensible R platform for species distribution modelling, Ecography, 39, 4, (368-375), (2016).
- Otso Ovaskainen, David B. Roy, Richard Fox and Barbara J. Anderson, Uncovering hidden spatial structure in species communities with spatially explicit joint species distribution models, Methods in Ecology and Evolution, 7, 4, (428-436), (2015).
- Holly F. Goyert, Beth Gardner, Rahel Sollmann, Richard R. Veit, Andrew T. Gilbert, Emily E. Connelly and Kathryn A. Williams, Predicting the offshore distribution and abundance of marine birds with a hierarchical community distance sampling model, Ecological Applications, 26, 6, (1797-1815), (2016).
- David García-Callejas and Miguel B. Araújo, The effects of model and data complexity on predictions from species distributions models, Ecological Modelling, 326, (4), (2016).
- Kaitlin C. Maguire, Diego Nieto-Lugilde, Jessica L. Blois, Matthew C. Fitzpatrick, John W. Williams, Simon Ferrier and David J. Lorenz, Controlled comparison of species- and community-level models across novel climates and communities, Proceedings of the Royal Society B: Biological Sciences, 10.1098/rspb.2015.2817, 283, 1826, (20152817), (2016).
- David M. Bell and Daniel R. Schlaepfer, On the dangers of model complexity without ecological justification in species distribution modeling, Ecological Modelling, 330, (50), (2016).
- Paige E. Copenhaver-Parry, Shannon E. Albeke and Daniel B. Tinker, Do community-level models account for the effects of biotic interactions? A comparison of community-level and species distribution modeling of Rocky Mountain conifers, Plant Ecology, 217, 5, (533), (2016).
- Cláudia Patrão, Jorge Assis, Marta Rufino, Gonçalo Silva, Kurt Jordaens, Thierry Backeljau and Rita Castilho, Habitat suitability modelling of four terrestrial slug species in the Iberian Peninsula (Arionidae:Geomalacusspecies), Journal of Molluscan Studies, 81, 4, (427), (2015).
- Nicole K. S. Barker, Stuart M. Slattery, Marcel Darveau and Steve G. Cumming, Modeling distribution and abundance of multiple species: Different pooling strategies produce similar results, Ecosphere, 5, 12, (1-24), (2014).
- C. Sérgio, C. A. Garcia, C. Vieira, H. Hespanhol, M. Sim-Sim, S. Stow and R. Figueira, Conservation of Portuguese red-listed bryophytes species in Portugal: Promoting a shift in perspective on climate changes, Plant Biosystems - An International Journal Dealing with all Aspects of Plant Biology, 10.1080/11263504.2014.949329, 148, 4, (837-850), (2014).
- Krishna Pacifici, Elise F. Zipkin, Jaime A. Collazo, Julissa I. Irizarry and Amielle DeWan, Guidelines for a priori grouping of species in hierarchical community models, Ecology and Evolution, 4, 7, (877), (2014).
- Miguel B. Araújo and Alejandro Rozenfeld, The geographic scaling of biotic interactions, Ecography, (no), (2013).
- Rajapandian Kanagaraj, Miguel B. Araujo, Rathin Barman, Priya Davidar, Rahul De, Dinesh K. Digal, G. V. Gopi, A. J. T. Johnsingh, Kashmira Kakati, Stephanie Kramer‐Schadt, Babu R. Lamichhane, Salvador Lyngdoh, M. D. Madhusudan, Muneer Ul Islam Najar, Jyotirmayee Parida, Narendra M. B. Pradhan, Jean‐Philippe Puyravaud, R. Raghunath, P. P. Abdul Rahim, K. Muthamizh Selvan, Naresh Subedi, Antonio Trabucco, Swati Udayraj, Thorsten Wiegand, Amirtharaj C. Williams and Surendra P. Goyal, Predicting range shifts of Asian elephants under global change, Diversity and Distributions, , (2019).
- Marika Galanidi, Gokhan Kaboglu and Kemal C. Bizsel, Predicting the Composition of Polychaete Assemblages in the Aegean Coast of Turkey, Frontiers in Marine Science, 10.3389/fmars.2016.00154, 3, (2016).




