Colonization of the Mediterranean basin by the vector biting midge species Culicoides imicola: an old story
Corresponding Author
CIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
CNRS, UMR 5290 Maladies Infectieuses & Vecteurs‐Ecologie, Génétique, Ecologie, Contrôle (MIVEGEC), Université de Montpellier, Montpellier, France
IRD, UR 224 MIVEGEC, BP 64501, Agropolis, 34394 Montpellier Cedex 5, France
Correspondence: Stéphanie Jacquet, Fax: +33 467 614 140; E‐mail: Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Search for more papers by this authorINRA, UMR1355, Institut Sophia Agrobiotech, 06903 Sophia Antipolis, France
Search for more papers by this authorComputational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Plateforme de recherche CYROI, CRVOI, Sainte Clotilde, La Réunion, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorUSDA‐ARS European Biological Control Laboratory, 54623 Thessaloniki, Greece
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorMedicine Faculty, Institute of Parasitology and Tropical Pathology (IPPTS), EA7292, 67000 Strasbourg, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorDepartment of Clinical Microbiology, Umea University, Umea, Sweden
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorRegional Veterinary Laboratory of Draa‐Ben‐Kheda, Tizi‐Ouzou, Algeria
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorISRA‐LNERV, BP 2057 Dakar, Senegal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCirad, UPR AGIRs, RP‐PCP, Harare, Zimbabwe
Cirad, UPR AGIRs, Montpellier, France
Department of Biological Sciences, Entomology, University of Zimbabwe, PO Box MP 167, Mount Pleasant, Harare, Zimbabwe
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorIstituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise ‘G. Caporale’, 64100 Teramo, Italy
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorKoret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorISRA‐LNERV, BP 2057 Dakar, Senegal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorKenya Agricultural and Livestock Research Organization Sericulture, PO Box 7816, Code 01000 Thika, Kenya
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorAgricultural Research Council‐Onderstepoort Veterinary Institute, Parasites, Vectors and Vector‐borne Diseases, Onderstepoort, 0110 South Africa
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorOffice National de Sécurité Sanitaire des produits Alimentaires (ONSSA), Rabat, Morocco
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorDepartamento de Patología Animal, Facultad de Veterinaria, Universidad de Zaragoza, Zaragoza, Spain
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorUR Hortsys, Cirad, Montpellier, France
Plant Health Department, ICIPE, Nairobi, Kenya
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorMedicine Faculty, Institute of Parasitology and Tropical Pathology (IPPTS), EA7292, 67000 Strasbourg, France
EID Méditerranée, 34184 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorLaboratory of Zoology, University of Balearics (UIB), Palma de Mallorca, Spain
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorINRA UMR1309 CMAEE, 34398 Montpellier, France
Centre de Recerca en Sanitat Animal (CReSA), UAB‐IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra (Cerdanyola del Vallès), Spain
CIRAD, UMR CMAEE, 97170 Petit Bourg, Guadeloupe, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorFaculdade de Medicina Veterinária, CIISA, ULisboa, 1300‐477 Lisboa, Portugal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorFaculdade de Medicina Veterinária, CIISA, ULisboa, 1300‐477 Lisboa, Portugal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCNRS, UMR 5175 CEFE, Université de Montpellier, Montpellier, France
EPHE Campus CNRS, 1919 route de Mende, 34293 Montpellier Cedex 5, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorEID Méditerranée, 34184 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorLab of Medical Parasitology, Biotechnologies & Biomolecules (LR 11 IPT 06), Pasteur Institute of Tunis, Tunis, Tunisia
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorISRA‐LNERV, BP 2057 Dakar, Senegal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorAgricultural Research Council‐Onderstepoort Veterinary Institute, Parasites, Vectors and Vector‐borne Diseases, Onderstepoort, 0110 South Africa
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorDepartment of Biological Sciences, Entomology, University of Zimbabwe, PO Box MP 167, Mount Pleasant, Harare, Zimbabwe
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Search for more papers by this authorCNRS, UMR 5290 Maladies Infectieuses & Vecteurs‐Ecologie, Génétique, Ecologie, Contrôle (MIVEGEC), Université de Montpellier, Montpellier, France
IRD, UR 224 MIVEGEC, BP 64501, Agropolis, 34394 Montpellier Cedex 5, France
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
ISRA‐LNERV, BP 2057 Dakar, Senegal
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Search for more papers by this authorCorresponding Author
CIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
CNRS, UMR 5290 Maladies Infectieuses & Vecteurs‐Ecologie, Génétique, Ecologie, Contrôle (MIVEGEC), Université de Montpellier, Montpellier, France
IRD, UR 224 MIVEGEC, BP 64501, Agropolis, 34394 Montpellier Cedex 5, France
Correspondence: Stéphanie Jacquet, Fax: +33 467 614 140; E‐mail: Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Search for more papers by this authorINRA, UMR1355, Institut Sophia Agrobiotech, 06903 Sophia Antipolis, France
Search for more papers by this authorComputational and Evolutionary Biology, Faculty of Life Sciences, University of Manchester, Manchester, UK
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Plateforme de recherche CYROI, CRVOI, Sainte Clotilde, La Réunion, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorUSDA‐ARS European Biological Control Laboratory, 54623 Thessaloniki, Greece
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorMedicine Faculty, Institute of Parasitology and Tropical Pathology (IPPTS), EA7292, 67000 Strasbourg, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorDepartment of Clinical Microbiology, Umea University, Umea, Sweden
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorRegional Veterinary Laboratory of Draa‐Ben‐Kheda, Tizi‐Ouzou, Algeria
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorISRA‐LNERV, BP 2057 Dakar, Senegal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCirad, UPR AGIRs, RP‐PCP, Harare, Zimbabwe
Cirad, UPR AGIRs, Montpellier, France
Department of Biological Sciences, Entomology, University of Zimbabwe, PO Box MP 167, Mount Pleasant, Harare, Zimbabwe
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorIstituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise ‘G. Caporale’, 64100 Teramo, Italy
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorKoret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorISRA‐LNERV, BP 2057 Dakar, Senegal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorKenya Agricultural and Livestock Research Organization Sericulture, PO Box 7816, Code 01000 Thika, Kenya
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorAgricultural Research Council‐Onderstepoort Veterinary Institute, Parasites, Vectors and Vector‐borne Diseases, Onderstepoort, 0110 South Africa
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorOffice National de Sécurité Sanitaire des produits Alimentaires (ONSSA), Rabat, Morocco
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorDepartamento de Patología Animal, Facultad de Veterinaria, Universidad de Zaragoza, Zaragoza, Spain
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorUR Hortsys, Cirad, Montpellier, France
Plant Health Department, ICIPE, Nairobi, Kenya
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorMedicine Faculty, Institute of Parasitology and Tropical Pathology (IPPTS), EA7292, 67000 Strasbourg, France
EID Méditerranée, 34184 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorLaboratory of Zoology, University of Balearics (UIB), Palma de Mallorca, Spain
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorINRA UMR1309 CMAEE, 34398 Montpellier, France
Centre de Recerca en Sanitat Animal (CReSA), UAB‐IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra (Cerdanyola del Vallès), Spain
CIRAD, UMR CMAEE, 97170 Petit Bourg, Guadeloupe, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorFaculdade de Medicina Veterinária, CIISA, ULisboa, 1300‐477 Lisboa, Portugal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorFaculdade de Medicina Veterinária, CIISA, ULisboa, 1300‐477 Lisboa, Portugal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCNRS, UMR 5175 CEFE, Université de Montpellier, Montpellier, France
EPHE Campus CNRS, 1919 route de Mende, 34293 Montpellier Cedex 5, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorEID Méditerranée, 34184 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorLab of Medical Parasitology, Biotechnologies & Biomolecules (LR 11 IPT 06), Pasteur Institute of Tunis, Tunis, Tunisia
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorISRA‐LNERV, BP 2057 Dakar, Senegal
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorAgricultural Research Council‐Onderstepoort Veterinary Institute, Parasites, Vectors and Vector‐borne Diseases, Onderstepoort, 0110 South Africa
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorDepartment of Biological Sciences, Entomology, University of Zimbabwe, PO Box MP 167, Mount Pleasant, Harare, Zimbabwe
By alphabetical order. These authors contributed to the work by collecting and/or identifying C. imicola samples, and commenting final manuscript.Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
Search for more papers by this authorCNRS, UMR 5290 Maladies Infectieuses & Vecteurs‐Ecologie, Génétique, Ecologie, Contrôle (MIVEGEC), Université de Montpellier, Montpellier, France
IRD, UR 224 MIVEGEC, BP 64501, Agropolis, 34394 Montpellier Cedex 5, France
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
ISRA‐LNERV, BP 2057 Dakar, Senegal
Search for more papers by this authorCIRAD UMR15 CMAEE, 34398 Montpellier, France
INRA UMR1309 CMAEE, 34398 Montpellier, France
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Abstract
Understanding the demographic history and genetic make‐up of colonizing species is critical for inferring population sources and colonization routes. This is of main interest for designing accurate control measures in areas newly colonized by vector species of economically important pathogens. The biting midge Culicoides imicola is a major vector of orbiviruses to livestock. Historically, the distribution of this species was limited to the Afrotropical region. Entomological surveys first revealed the presence of C. imicola in the south of the Mediterranean basin by the 1970s. Following recurrent reports of massive bluetongue outbreaks since the 1990s, the presence of the species was confirmed in northern areas. In this study, we addressed the chronology and processes of C. imicola colonization in the Mediterranean basin. We characterized the genetic structure of its populations across Mediterranean and African regions using both mitochondrial and nuclear markers, and combined phylogeographical analyses with population genetics and approximate Bayesian computation. We found a west/east genetic differentiation between populations, occurring both within Africa and within the Mediterranean basin. We demonstrated that three of these groups had experienced demographic expansions in the Pleistocene, probably because of climate changes during this period. Finally, we showed that C. imicola could have colonized the Mediterranean basin in the Late Pleistocene or Early Holocene through a single event of introduction; however, we cannot exclude the hypothesis involving two routes of colonization. Thus, the recent bluetongue outbreaks are not linked to C. imicola colonization event, but rather to biological changes in the vector or the virus.
Citing Literature
Supporting Information
| Filename | Description |
|---|---|
| mec13422-sup-0001-Supinfo.docxWord document, 1.3 MB | Table S1 Primers used for the amplification of the microsatellite loci in C. imicola (Mardulyn et al. 2013), allele size range observed in this study and annealing temperature (Ta) used for amplification. Table S2 Prior distributions of demographic, historical and mutation parameters used for ABC inferences. Table S3 Genetic diversity based on mitochondrial data for each sampled site and genetic cluster assessed by the spatial group clustering implemented in baps v.6.0. Table S4 Genetic diversity based on microsatellite data for each sampled site and genetic cluster assessed by structure v.2.3.3. Table S5 Pairwise FST values between C. imicola populations samples (cf. Table 1 for codes) estimated with fstat v2.9.3.2. Table S6 Results of demographic analysis based on COI and CytB concatenated data set for each cluster. Table S7 Pairwise FST values based on COI mitochondrial gene between the genetic clusters inferred by baps v.6.0. Table S8 Description of the scenarios tested by approximate Bayesian computation analyses (ABC) on microsatellite data attempting to retrace the routes of colonization of C. imicola with different sets of sampled populations. Table S9 Approximate Bayesian computation model checking of the most probable scenario (Scenario 5 and 7) using all the summary statistics (used and unused for model selection). Fig. S1 Genetic clustering of C. imicola sampled populations (a), Efα median‐joining haplotype network (b) and mismatch distribution among pairwise differences among haplotypes based on EFα sequences (c). Fig. S2 Ancestry estimation assuming three and four population clusters (K = 3 and K = 4) based on the Bayesian clustering method implemented in structure v.2.3.3. Fig. S3 Median‐joining haplotype network of a) Cytochrome b and b) COI and Cytochrome b concatenated sequences of C. imicola. Fig. S4 Principal component analysis summary statistics simulated under the most probable scenarios: Scenario 5 (atop) and 7 (bottom). |
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