Nitrogen fixation does not axiomatically lead to phosphorus limitation in aquatic ecosystems
Abstract
A long-standing debate in ecology deals with the role of nitrogen and phosphorus in management and restoration of aquatic ecosystems. It has been argued that nutrient reduction strategies to combat blooms of phytoplankton or floating plants should solely focus on phosphorus (P). The underlying argument is that reducing nitrogen (N) inputs is ineffective because N2-fixing species will compensate for N deficits, thus perpetuating P limitation of primary production. A mechanistic understanding of this principle is, however, incomplete. Here, we use resource competition theory, a complex dynamic ecosystem model and a 32-year field data set on eutrophic, floating-plant dominated ecosystems to show that the growth of non-N2-fixing species can become N limited under high P and low N inputs, even in the presence of N2 fixing species. N2-fixers typically require higher P concentrations than non-N2-fixers to persist. Hence, the N2 fixers cannot deplete the P concentration enough for the non-N2-fixing community to become P limited because they would be outcompeted. These findings provide a testable mechanistic basis for the need to consider the reduction of both N and P inputs to most effectively restore nutrient over-enriched aquatic ecosystems.
Introduction
Eutrophication due to anthropogenic nutrient over-enrichment threatens the biodiversity, function and sustainability of freshwater ecosystems worldwide (Smith 2003), by promoting surface dwelling toxic cyanobacterial blooms (Paerl 1988, Huisman et al. 2005) and through the invasion by dense mats of free-floating plants (Scheffer et al. 2003). Both lead to aphotic, anoxic sub-surface conditions that severely constrain aquatic life (Heisler et al. 2008). To combat these eutrophication-related declines in ecosystem function, the question arises as to whether to focus on reducing inputs of nitrogen (N) or phosphorus (P) or both (Conley et al. 2009, Paerl et al. 2016).
Based on evidence from long-term whole-ecosystem experiments, it has been proposed that nutrient reduction strategies should focus solely on P, because N reduction favours N2-fixing cyanobacteria that draw on the vast atmospheric N2 reserve, eventually providing the eutrophic ecosystem with enough N to compensate for N deficits, thus perpetuating P-limitation (Schindler 1977, Hecky and Kilham 1988, Schindler et al. 2008, Schindler and Hecky 2009). The general applicability of this principle has been questioned however, as it has been argued that N2-fixers cannot meet the N requirements of eutrophic ecosystems due to ecological and geochemical constraints on N2-fixation (Howarth et al. 1988, Paerl 1990, 19902017, Vitousek and Howarth 1991), and because the N input by N2-fixers is offset by denitrification in eutrophic waters (Lewis and Wurtsbaugh 2008, Paerl et al. 2010, 20102016, Scott and McCarthy 2010, Lewis et al. 2011), thus perpetuating N-limitation (Paerl et al. 2016). A far-reaching implication is that ecosystem managers should also consider the reduction of N inputs, rather than focusing solely on P (Conley et al. 2009). However, a mechanistic understanding of how N2-fixation affects nutrient limitation and eutrophication in aquatic ecosystems remains incomplete.
Here, we use classical resource competition theory (Tilman 1982, Huisman and Weissing 1995) to explore whether N2-fixers are capable of perpetuating P limitation when lowering external N supply. To address this, we built a resource competition model and analyzed for different combinations of external N and P supply how N2-fixation influences the structure, productivity and nutrient limitation characteristics of a eutrophic community dominated by floating macrophytes. Then, we implemented the resource competition model in an established complex freshwater ecosystem model to test the robustness of our results in a more realistic setting including various biogeochemical processes and biotic interactions. Finally, we compared the model predictions with a 32-year field data set on eutrophic floating-plant dominated ecosystems to validate the results, and discussed the role of N2-fixation and its implication in developing nutrient management strategies for aquatic ecosystems undergoing cultural eutrophication.
Methods
Resource competition model
We developed a mechanistic model that describes a community of floating plant species that compete for N, P and light (Table 1, Supplementary material Appendix 1 Fig. A1). One species is able to fix N2 from the atmosphere while the other is completely reliant on combined N in the water column. The model builds on existing theoretical frameworks for resource competition (Huisman and Weissing 1995, Van Gerven et al. 2015a) and simulates the dynamics of plant biomass (g DW m−2) and the N and P concentrations (g N m−3 and g P m−3) in the water column (Eq. 1–4). The water column N and P concentrations are affected by supply, outflow, uptake and remineralization. The biomass dynamics depend on loss rate m and growth rate p. The growth rate is co-limited by light and nutrients (Eq. 5 and 6). Nutrient limitation follows the Michaelis–Menten function (Eq. 7 and 8). The non-N2-fixer is limited by either N or P according to Liebig's law of the minimum, whereas the N2 fixer is only limited by P as its N demand is assumed to be met by N2 fixation. Light limitation is also characterized by the Michaelis–Menten function (Eq. 9) and follows from integrating over the plant depth, as the light intensity I decreases with depth due to light attenuation by the plants according to Lambert Beer's law (Eq. 10). Via the remineralization process the N2 fixer is capable of enriching the system with N, as part of the nutrients in dead plant tissue ends up in the water while the remaining part is lost to the sediment by burial.
| Description | Mathematical formulation | Eq. |
|---|---|---|
| Differential equations | ||
| Biomass dynamics non-N2-fixer | ![]() |
1 |
| Biomass dynamics N2-fixer | ![]() |
2 |
| N dynamics in the water column | ![]() |
3 |
| P dynamics in the water column | ![]() |
4 |
| Auxiliary equations | ||
| Growth rate of the non-N2-fixer | ![]() |
5 |
| Growth rate of the N2-fixer |
|
6 |
| N limitation function |
|
7 |
| P limitation function |
|
8 |
| Light limitation function |
|
9 |
| Light intensity below the plants |
|
10 |
Model analysis
To examine the interplay between external N supply and N2-fixation on nutrient limitation and productivity in the aquatic ecosystem, we analyzed the basic configuration of the model, after which we added complexity in a stepwise manner. We first considered the hypothetical situation of having two non-N2-fixing species with identical resource requirements, using parameter values of duckweed (Lemna spp., Table 2). De facto we were thus modelling growth of a single species resulting from intraspecific competition. This exercise provided an important contrast for the next step, where we granted one of the two species the capability to fix N2. This second step exposes the single effect of N2 fixation on the ecosystem. As a third step, we also changed the other parameter values of the N2-fixer, implementing values of the water fern (Azolla spp.), a floating plant species living in symbiosis with the N2-fixing cyanobacterium Anabaena azollae (Wagner 1997, Table 2). This third step allowed us to evaluate the effect of N2-fixation in relation to the different resource requirements of Lemna and Azolla. For each of the steps, we determined the competition outcome for a range of N (n in ) and P (p in ) inputs and assessed which nutrient was limiting the growth rate of the non-N2-fixing species. We also took a cross section in the N and P plane, focusing on the effect of decreasing N input while keeping the P input constant at a fairly high level representing eutrophic conditions. We calculated the biomass of both species to analyze how external N supply controls the productivity in the system and reported which resource was limiting the growth of the non-N2-fixing species. To compare the effects of reducing the supply of P instead of N, we present a similar analysis in Supplementary material Appendix 1 Fig. A7, focusing on the effect of decreasing P input while keeping the N input constant. Additionally, to gain more insight into the competitive ability of the species, we calculated and analyzed the zero net growth isoclines of the macrophytes for the different resources, which is presented in Supplementary material Appendix 1 Fig. A9.
| Description | Symbol | Unit | Lemna | Azolla |
|---|---|---|---|---|
| Species parameters | ||||
| Maximum growth rate | p max , i | day−1 | 0.4a | 0.25b |
| Loss rate | m i | day−1 | 0.05a | 0.03c |
| Light attenuation coeff. | k i | m2 g DW−1 | 0.07a* | 0.07d |
| Half-sat. constant for light | H i | J m−2 s−1 | 25a* | 35e |
| Half-sat. constant for N | M N , L | g N m−3 | 2.5a | – |
| Half-sat. constant for P | M P , i | g P m−3 | 0.25a | 0.45f |
| N to dry weight ratio | c N , i | g N g DW−1 | 0.07a | 0.03g |
| P to dry weight ratio | c P , i | g P g DW−1 | 0.015a | 0.01g |
| Environmental parameters | ||||
| N loading | n in | g N m−2 day−1 | 0–0.5 | |
| P loading | p in | g P m−2 day−1 | 0–0.05 | |
| Incident light intensity | I in | J m−2 s−1 | 200 | |
| Dilution rate of water column | D | day−1 | 0.1 | |
| Remineralization fraction of died-off plants | α | – | 0.5 | |
| Water column depth | z B | m | 0.5 |
Complex ecosystem model
To test whether the results of our resource competition model remain the same in a more realistic setting, we implemented the equations of the resource competition model in a full-scale and well-tested dynamic ecosystem model PCDitch (Janse 1998, Janse and Van Puijenbroek 1998), and repeated the analyses. PCDitch has previously been used to predict a nutrient-driven regime shift from submerged plants to floating-plant dominance (Van Gerven et al. 2015b). PCDitch describes multiple biotic groups that compete for nutrients and light and have a different competition strategy due to their distinct growth forms, including phytoplankton and several submersed and emergent macrophytes (Supplementary material Appendix 1 Fig. A2). Furthermore, PCDitch comprises a sediment layer, includes all key nutrient cycling processes, including sediment-P release and denitrification, and accounts for seasonal variation in water temperature, light intensity and daylength (Janse 2005 for detailed process descriptions). We used the parameter settings of the calibrated model (Janse 1998), resembling an ‘average’ macrophyte-dominated freshwater ecosystem in the temperate zone. Because PCDitch accounts for seasonality, we slightly extended the equations of the resource competition model as presented in Table 1 to account for the phenology of Lemna and Azolla, by making the growth dependent on temperature and by incorporating an overwintering period and a growing season. We adopted the associated phenological parameters from the original Lemna group in PCDitch, and kept these parameters the same for Lemna and Azolla. We used summer averaged results to evaluate the outcome of the competition experiments and again reported which resource was limiting the growth of the non-N2-fixing floating plant species together with the biomass of both species. Additionally, we performed a sensitivity analysis to better understand the effect of denitrification on the results, which is presented in Supplementary material Appendix 1 Fig. A8.
Empirical validation
The results of the models used in this study were compared with an extensive 32-year data set (from 1980 to 2012) of occurrences of vegetation in eutrophic aquatic ecosystems in the Netherlands. These data are part of Limnodata Neerlandica, a large database collected by Dutch water authorities in drainage ditches, canals, streams, ponds and lakes (STOWA 2015). This database contains both macrophyte abundances and water column nutrient concentrations. We extracted data on the occurrence of Azolla spp. and Lemna spp., from locations where nutrient concentrations were also measured. A Welch's t-test was used to check for differences in occurrence of Azolla spp. and Lemna spp. in relation to total N and total P in the water column.
Results
For a community of non-N2-fixing floating macrophytes, the resource competition model shows that a decrease of the external N supply (n in ) leads to a shift from P to N limitation in the growth rate (Fig. 1a, Supplementary material Appendix 1 Fig. A3). Once the growth is limited by N, a further reduction of the external N supply leads to a decrease of productivity (Fig. 1a, right panels).

Predicted structure and nutrient limitation characteristics of a community of (a) identical non-N2-fixers β1 and β2, and (b) non-N2-fixer β and N2-fixer δ, for different supply of N (n in ) and P (p in ). Left panel, competition outcome where ‘&’ denotes coexistence. Middle panel, nutrient that limits the growth of the non-N2-fixer (Eq. 5). Right panel, underlying biomasses in g DW m−2 and nutrient limitation factors of the non-N2-fixer (Eq. 7 and 8) along a gradient of N supply (p in = 0.04). All species were parametrized as Lemna sp. (Table 2) except for M N which does not apply to N2-fixer δ.
When considering a hypothetical community of N2-fixers and non-N2-fixers that have the same resource requirements, the resource competition model predicts that N2-fixers have the potential to keep the system P-limited when the system's external N supply is lowered (Fig. 1b). We find that P limitation is much more pronounced in the presence of a N2 fixer (Fig. 1b, middle panel) compared to a community where N2-fixation does not occur (Fig. 1a, middle panel). The presence of the N2-fixer makes it possible for the non-N2-fixing species to maintain relatively high levels of biomass at low external N supply, compared to the situation without N2-fixers (Fig. 1, right panels). However, the biomass of the non-N2-fixing species decreases when the external N supply is lowered. The N2-fixing species, which does not compete for N in the water column, benefits from a reduction of the external N supply and becomes dominant, offsetting the reduction of the non-N2-fixing species. As a result, the external N supply has no control on the total productivity (Fig. 1, right panels). This is even the case when N2-fixers do not ‘fertilize’ the water with fixed atmospheric N through remineralization of died-off biomass (Supplementary material Appendix 1 Fig. A4).
The ability of N2-fixers to perpetuate P-limitation disappears when we consider the species of interest, the N2-fixing Azolla and non-N2-fixing Lemna, by implementing the different growth parameters and taking into account the respective differences in resource requirements. Our modelling results indicate that Azolla is unable to coexist with Lemna as long as the growth rate of Lemna is limited by P (Fig. 2a). Only when the growth limitation of Lemna switches from P to N, following a reduction of external N input, is Azolla able to coexist. Thus, the N2-fixing capacity of Azolla does not prevent Lemna from becoming N limited. These findings remain even if we assume remineralization and associated ‘N-fertilization’ to be very high (Supplementary material Appendix 1 Fig. A5). Consequently, a further reduction of external N input reduces the biomass of Lemna (Fig. 2a). The Azolla, however, relieved from competitive exclusion, can benefit from the poor growth conditions for Lemna and builds up considerable biomass under low N and high P input conditions (Fig. 2a, right panel). As a result, there is no consistent control of external N input on the total productivity in the system. These results are confirmed when we analyze the competition outcome along a gradient of external P supply while keeping the N supply constant (Supplementary material Appendix 1 Fig. A7, right panel). When the external input of N is high, the growth of Lemna is limited by P and Azolla is unable to coexist. When the N supply is relatively low, Azolla dominates as long as the growth of Lemna is limited by N. For both high and low N supply, the reduction of external P supply has a clear negative effect on the total biomass in the system.

Structure and nutrient limitation characteristics of a floating-plant community of Lemna (L) and Azolla (A) as predicted by (a) the resource competition model and (b) the complex ecosystem model. Left panel, competition outcome where ‘S’ denotes submerged plants. Middle panel, nutrient that limits the growth of the non-N2-fixing Lemna. Right panel, underlying biomasses in g DW m−2 and nutrient limitation factors of Lemna along a gradient of N supply (p in = 0.04). Table 2 for parameter values. Note that for the ecosystem model it concerns summer-averaged results.
When we included the resource competition model in the full-scale ecosystem model PCDitch we found similar results: namely, that when lowering the N supply, the N2-fixing Azolla cannot keep the growth of non-N2-fixing Lemna P-limited (Fig. 2b, Supplementary material Appendix 1 Fig. A6). Both models predict that Azolla can only exist if the growth of Lemna is limited by N and there is sufficiently P available for Azolla to grow. To validate these qualitative results, we analysed the field data, which showed that N2-fixing Azolla spp. indeed occurred at significantly higher P concentrations than Lemna spp. (Fig. 3a: p < 0.001). Note that in the complex ecosystem model the reduction of external N supply does lead to a decrease of the total biomass of floating macrophytes. The potential growth of Azolla can only partly compensate for the reduced growth of Lemna (Fig. 2b, right panel). Switching-off the denitrification process in PCDitch shows that denitrification is not the main driver of the observed reduction of total biomass (Supplementary material Appendix 1 Fig. A8).

Box-whisker plots of (a) the total P concentrations and (b) the total N concentrations at which Azolla spp. and Lemna spp. were observed in Dutch water bodies (1980–2012). The shown p-values result from a Welch's t-test for which the data were log-transformed.
Discussion
This study has helped clarify the potential roles N and P input reductions play in freshwater ecosystem restoration strategies (Lewis and Wurtsbaugh 2008, Schindler and Hecky 2008, 20082009, Lewis et al. 2011, Paerl et al. 2016, Schindler et al. 2016, 2017, Cotner 2017). In this regard, a key question we have addressed is whether N2-fixers are capable of perpetuating P limitation by compensating for ecosystem-scale N deficiencies, as this would make controlling N ineffective. Here, we used mechanistic modelling and classical resource competition theory to demonstrate that, for a eutrophic water body dominated by floating macrophytes, N2-fixation does not completely fulfill this ecosystem's N demands. The capacity of the N2-fixer to provide the system with combined N appears to be restricted by the resource requirements of the non-N2-fixing community. As soon as the addition of fixed N would drive the non-N2-fixing species into P limitation, the N2-fixers would be outcompeted by the non-N2-fixers. This becomes clearer when examining the lowest level at which the species can deplete resources, referred to as R* in competition theory (Tilman 1982, Huisman and Weissing 1995). When we calculate the lowest levels to which the different species can deplete P (P * ) and the light availability (I out * ) in the water column, we find that Azolla has a higher value for P * and I out * , making Azolla an inferior competitor for P and light (Supplementary material Appendix 1 Fig. A9). Therefore, Azolla cannot drive the entire system into P-limitation as it can never deplete the P concentration to a level low enough for Lemna to become P-limited. A fortiori, Lemna competitively excludes Azolla when P is limiting. The limited competitive power of Azolla, being only a superior competitor for N due to its ability to fix N2, also explains why Azolla is abundant only when the supply of N is sufficiently low compared to the P supply (Fig. 2a, left panel).
Although illustrated for floating plants, it seems plausible that N2-fixers in general have higher resource requirements than their non-N2-fixing competitors, given the energetic costs of the N2-fixation process and the associated need for heterocyst production (Paerl 1990, Paerl et al. 2016). This would imply that also in phytoplankton-dominated systems, such as eutrophic lakes, N2-fixers cannot relieve the system from N limitation at low N inputs because of their higher resource requirements, and their inferior competitive capabilities for P and light. In this regard, competition experiments among cyanobacterial bloom formers show that N2-fixing species are inferior competitors for light as they are competitively excluded by non-N2-fixers when light is limiting (Zevenboom et al. 1981, Huisman et al. 1999). Additionally, under N-limited conditions, when N2-fixers exclusively rely on N2-fixation for their N demands, they may become even poorer competitors for light, as demonstrated by markedly increasing I out * values of a N2-fixing species with decreasing N supply (Agawin et al. 2007). Furthermore, the observed P * values of N2-fixing cyanobacteria, though showing quite some plasticity, are on average higher than those of non-N2-fixing species (De Nobel et al. 1997, Passarge et al. 2006), indicating that N2-fixing cyanobacteria are also inferior competitors for P. This would help explain why at least half of the freshwater ecosystems on the world are either N-limited or N and P co-limited (Elser et al. 2007, Paerl et al. 2016).
Does this imply that reducing N inputs to restore aquatic ecosystems will be universally successful? Our mechanistic models dictate that caution must be practiced. The ultimate goal of controlling N input is not to create N-limitation per se, but to reduce the overall detrimental effects caused by nuisance species. Although our models indicate that N-fixers appear unable to perpetuate P-limitation, they also show that N-fixers benefit from decreasing N inputs and may be able to increase their biomass considerably. Dense mats of Azolla can be just as harmful for the ecosystem and the provisioning of ecosystem services as the targeted non-N2-fixing Lemna species (Janes et al. 1996, Hussner 2012). Moreover, the N2-fixers provide extra N to the system and thereby can potentially provide combined N for harmful eutrophic species (Schindler et al. 2008).
On the other hand, our models probably overestimate the growth potential of N2-fixers by ignoring other (in addition to P) ecological, geochemical and energetic constraints on N2-fixation (Paerl 1990, 19902017, Berman-Frank et al. 2007). For example, our models assume that the N2-fixer's N demand is immediately fulfilled by N2-fixation and thereby ignore most of the energetic costs associated with N2-fixation (Paerl 1990, 19902017). Such constraints could explain why N2-fixation and the associated heterocyst-production was minimal at low N supply (Ferber et al. 2004) and that N2-fixers do not always become dominant over non-N2-fixers when reducing N inputs (Paerl et al. 2014, 2016). This conclusion is also supported by long-term field data on floating macrophytes, which showed that N2-fixers do not necessarily occur at lower N availability when compared to non-N2-fixers (Fig. 3b). Moreover, in our comprehensive ecosystem model we did observe a moderate decrease in macrophyte biomass in response to the reduction of N input. Based on these observations, we propose that controlling N can be effective, given enough constraints on N2-fixation. Therefore, we advocate a balanced approach to ecosystem restoration by not solely focusing on reducing P inputs but also lowering N inputs (Conley et al. 2009, Paerl et al. 2016, Cotner 2017).
Given that excessive nutrient loading is one of the major drivers of global environmental change (Steffen et al. 2015), and that the societal costs associated with mitigating eutrophication are significant (Smith 2003, Dodds et al. 2009), there is a clear mandate for the scientific community to come up with an unambiguous standpoint on how to restore aquatic ecosystems. Here, we stress the importance of theoretical models, to ensure that the arguments used in the debate have a sound and testable mechanistic underpinning.
Acknowledgments – Funding – Financial support for this research was provided by the Netherlands Foundation for Applied Water Research (STOWA) project no. 443237 (to WMM, JHJ and JJMdK), the USA National Science Foundation INSPIRE Program 1230543 and the Dimensions of Biodiversity Program 1240851 and 1831096 (to HWP). JJK received support from the Marianne and Marcus Wallenberg Foundation Research Program on Natural Capital, Resilience and Biosphere Stewardship.
Author contributions – LPAvG, WMM and JJMdK conceived the study. LPAvG and JHJ developed the models. LPAvG and JJK analyzed the results and wrote the first draft. All authors contributed substantially to the writing of the manuscript.
Conflict of interests – We have no competing interests.
References
Supplementary material (available online as Appendix oik-05246 at <www.oikosjournal.org/appendix/oik-05246>). Appendix 1.









