Edited by: Gening Jiang
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Articles
Shikonin potentiates skin wound healing in Sprague–Dawley rats by stimulating fibroblast and endothelial cell proliferation and angiogenesis
- The Journal of Gene Medicine
-  28 November 2023
Long non‐coding RNA linc00659 promotes tumour progression by regulating FZD6/Wnt/β‐catenin signalling pathway in colorectal cancer via m6A reader IGF2BP1
- The Journal of Gene Medicine
-  27 November 2023
Graphical Abstract

The long non-coding RNA linc00659, which is highly expressed in colorectal cancer, binds to the m6A “reader” insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1). IGF2BP1 promotes the stabilization of FZD6 by recognizing the N6-methyladenosine (m6A) modification site on the FZD6 mRNA, and increased FZD6 activates the Wnt/β-catenin signalling pathway, consequently facilitating the progression of colorectal cancer.
Prognostic evaluation of the novel blueprint of DNA methylation sites by integrating bulk RNA‐sequencing and methylation modification data in endometrial cancer
- The Journal of Gene Medicine
-  27 November 2023
Graphical Abstract
Multiomics blueprint of PANoptosis in deciphering immune characteristics and prognosis stratification of glioma patients
- The Journal of Gene Medicine
-  23 November 2023
Homologous recombination deficiency reflects the heterogeneity and monitoring treatment response for patients with breast cancer
- The Journal of Gene Medicine
-  23 November 2023
Graphical Abstract

Reducing the transcriptional read-through rate of a lentiviral vector for β-thalassemia gene therapy
- The Journal of Gene Medicine
-  21 November 2023
Graphical Abstract

BB305 is used in clinical trials for treating β-thalassemia. We explored ways to reduce BB305 EATRT based on our previous findings without the cost of reducing its viral preparation titer or erythroid expression efficacy. By using such an approach, we could enhance its biosafety for clinical applications.
A novel anoikis‐related prognostic signature associated with prognosis and immune infiltration landscape in lung adenocarcinoma
- The Journal of Gene Medicine
-  20 November 2023
Bioinformatics analysis of the prognosis and biological significance of N6 methyladenine regulators in oral squamous cell carcinoma
- The Journal of Gene Medicine
-  20 November 2023
Graphical Abstract

In the present study, we initiated a comprehensive analysis by downloading The Cancer Genome Atlas-oral squamous cell carcinoma (TCGA-OSCC) datasets to investigate the role of m6A methylation in oral squamous cell carcinoma. Following this, we conducted differentially expressed genes (DEGs) analysis. Simultaneously, principal component analysis (PCA) analysis was employed as a precursor to least absolute shrinkage and selection operator (LASSO) and risk factor analyses, enabling us to uncover potential treatment targets and prognostic indicators. Additionally, receiver operating characteristic (ROC) analysis was executed to identify key regulators, followed by prognostic analysis and molecular docking studies.
Unveiling the immunogenomic landscape of cholangiocarcinoma: Identifying new prognostic markers and therapeutic targets based on CCL5 expression
- The Journal of Gene Medicine
-  20 November 2023
Graphical Abstract

The present study provides a comprehensive analysis of the immunogenomic landscape of cholangiocarcinoma (CCA) based on CCL5 expression, revealing significant heterogeneity and contrasting characteristics between different CCA subgroups. A prognostic framework utilizing COX16 and RSAD2 expression profiles was developed and verified.
Pharmacogenomic evaluation of CYP2C19 alleles linking low clopidogrel response and the risk of acute coronary syndrome in Indians
- The Journal of Gene Medicine
-  20 November 2023
Graphical Abstract

The efficiency of clopidogrel therapy for acute coronary syndrome (ACS) in Indian patients is influenced by CYP2C19 genetic variations. While *17 allele offers protection, *2 allele carries a high risk. The study provides valuable insights into the distribution and impact of CYP2C19 genetic variants among Indians. The findings suggest that genotyping CYP2C19 alleles in patients undergoing clopidogrel therapy is crucial in understanding the effectiveness and potential risks associated with the medication.
Identifying potential anti‐metastasis drugs for prostate cancer through integrative bioinformatics analysis and compound library screening
-  14 August 2023
Graphical Abstract

Copper ions induced prostate cell death. In prostate cancer cells (DU145, PC-3, C4-2B and LNCap), excess copper ions caused abnormal aggregation of thioredoxin in the tricarboxylic acid cycle pathway by directly binding to thioredoxin and interfering with iron–sulfur cluster proteins in the respiratory chain complex, causing a proteotoxic stress response that ultimately leads to cell death.
Apoptosis pathways and osteoporosis: An approach to genomic analysis
-  17 July 2023
Graphical Abstract

The research identified several genes associated with osteoporosis, such as CASP9, CASP8, CASP3, BAX and TP53. Pathway analysis revealed the involvement of caspase activation through the extrinsic apoptotic signaling pathway. Protein networks and central gene interactions were explored, and the study emphasized the significance of understanding the pathways of osteoporosis apoptosis for predicting susceptibility to the disease.
Integrated mRNA and microRNA profiling in lung tissue and blood from human silicosis
-  4 July 2023
Graphical Abstract

In the present study, we conducted a comprehensive analysis of differential mRNA and microRNA (miRNA) expression based on silicosis patients and normal people. Many differentially expressed mRNAs and miRNAs between their lung tissues were identified. There was no significant difference for most mRNA or miRNA expression between early stage and advanced stage silicosis lung tissues. In addition, PTEN and GNAI3 expression between lung tissues and blood samples suggested the opposite. PTEN was identified as potential biomarker for silicosis as a result of low methylation in the blood.
Characterization of neutrophil extracellular traps related gene pair for predicting prognosis in hepatocellular carcinoma
-  3 July 2023
Graphical Abstract

The neutrophil extracellular traps (NETs)-related model provides a promising prospect as a prognostic indicator. The nomogram model suggested a favorable classification performance. The immune status of the two risk groups showed a marked difference. Single cell RNA dataset and PCR were performed as validation.
Antisense lncRNA‐RP11‐498C9.13 promotes bladder cancer progression by enhancing reactive oxygen species‐induced mitophagy
-  29 June 2023
Graphical Abstract

Proline is essential for tumor cell metabolism, and pyrroline-5-carboxylate reductase 1 (PYCR1) is a pivotal enzyme for converting P5C to proline. An antisense lncRNA, RP11-498C9.13 increases PYCR1 in bladder cancer by stabilizing the PYCR1 mRNA. PYCR1 promotes the proliferation and invasiveness of bladder cancer cells and enhances reactive species induced-induced mitophagy.
Gene therapy in cancer
-  24 June 2023
Graphical Abstract

Cancer is a heterogeneous and complex disease in which some cells in the body proliferate uncontrollably and invade other tissues and individual differences are quite effective. Treatment using advanced therapy medicinal products, one of which is gene therapy, is gaining importance by the develeopment of biotechnology. Gene therapy strategies in cancer can be classified as antiangiogenic gene therapy, suicide gene therapy, CAR-T cell therapy, immunotherapy, tumor suppressor gene activation and inhibition of oncogene activation.
Identification of a novel cuproptosis‐related gene signature for rheumatoid arthritis—A prospective study
-  20 June 2023
Graphical Abstract

Workflow of this study. First, the expression of RNA modification factors and characteristics of immune infiltration in RA and normal synovial tissues were compared. Then, the prediction model and drug/TF–RNA modification interaction networks were constructed, followed by molecular subtype analysis. Finally, the biomarker was screened.
B4GALNT1 promotes carcinogenesis by regulating epithelial–mesenchymal transition in hepatocellular carcinoma based on pan‐cancer analysis
-  20 June 2023
Graphical Abstract

The proposed working model of B4GALNT1 functions as a tumor carcinogenesis through regulating epithelial-mesenchymal transition (EMT) in hepatocellular carcinoma (HCC) based on pan-cancer analysis. B4GALNT1 promoted the expression of apoptosis-related or EMT-related proteins and then decreased the expression of Bcl-2 and Bcl-xl in HCC cells, suggesting that B4GALNT1 may serve as a promising predictive biomarker and potential therapeutic target for HCC.
High throughput miRNA sequencing and bioinformatics analysis identify the mesenchymal cell proliferation and apoptosis related miRNAs during fetal mice palate development
-  15 June 2023
Graphical Abstract

The results demonstrate clear dynamic microRNA (miRNA) expression during palate development. The mesenchymal cell proliferation and apoptosis related miRNAs and genes are important during development of palate in fetal mice, including mmu-miR-6715-5p-Fgf4, mmu-miR-149-3p-Vegfa, mmu-miR-669m-5p/mmu-miR-466m-5p-Bmp7, mmu-miR-504-3p-Hnf1b, mmu-miR-6912-5p-Pax2, etc.
Association of matrix metalloproteinase‐2 gene variants with diabetic nephropathy risk
-  13 June 2023
Graphical Abstract

The present study included 726 type 2 diabetes (T2D) cases, divided into 222 with nephropathy and 504 cases without nephropathy, and 310 controls. Demographic data and blood samples were taken from participants. DNA was extracted and genotyped for MMP-2, −1306C/T, −790T/G, −1575G/T and −735C/T by a real-time PCR. The −790G allele and GCGC, GTAC haplotypes are associated with a risk of diabetic nephropathy (DN).
Genome wide analysis of dexamethasone stimulated mineralization in human dental pulp cells by RNA sequencing
- The Journal of Gene Medicine
-  4 December 2022
The role and mechanism of long non‐coding RNAs in homologous recombination repair of radiation‐induced DNA damage
- The Journal of Gene Medicine
-  19 December 2022
Methyltransferase‐like 3 modulates osteogenic differentiation of adipose‐derived stem cells in osteoporotic rats
- The Journal of Gene Medicine
-  13 February 2023
Application of CAR‐T cell technology in autoimmune diseases and human immunodeficiency virus infection treatment
- The Journal of Gene Medicine
-  13 February 2023
WDR3 promotes stem cell‐like properties in prostate cancer by inhibiting USF2‐mediated transcription of RASSF1A
- The Journal of Gene Medicine
-  10 March 2023
A novel homozygous synonymous splicing variant in SELENOI gene causes spastic paraplegia 81
- The Journal of Gene Medicine
-  21 March 2023
Successful liver transduction by re‐administration of different adeno‐associated virus vector serotypes in mice
- The Journal of Gene Medicine
-  27 March 2023
Circ_0073228 serves as a competitive endogenous ribonucleic acid to facilitate proliferation and inhibit apoptosis of hepatocellular carcinoma cells by the miR‐139‐5p/deoxyribonuclease II axis
- The Journal of Gene Medicine
-  30 March 2023
Successful AAV8 readministration: Suppression of capsid‐specific neutralizing antibodies by a combination treatment of bortezomib and CD20 mAb in a mouse model of Pompe disease
- The Journal of Gene Medicine
-  30 March 2023
Therapeutic strategy for Fabry disease by intravenous administration of adeno‐associated virus 2 or 9 in α‐galactosidase A‐deficient mice
- The Journal of Gene Medicine
-  30 June 2023
Application of CAR‐T cell technology in autoimmune diseases and human immunodeficiency virus infection treatment
- The Journal of Gene Medicine
-  13 February 2023
Monkeypox: Virology, laboratory diagnosis and therapeutic approach
- The Journal of Gene Medicine
-  2 May 2023
Development of oncolytic and gene therapy vectors based on adenovirus serotype 4 as an alternative to adenovirus serotype 5
- The Journal of Gene Medicine
-  14 August 2023
Network pharmacology and bioinformatics analysis on the underlying mechanisms of baicalein against oral squamous cell carcinoma
- The Journal of Gene Medicine
-  27 February 2023
Apoptosis pathways and osteoporosis: An approach to genomic analysis
- The Journal of Gene Medicine
-  17 July 2023
Machine learning reveals PANoptosis as a potential reporter and prognostic revealer of tumour microenvironment in lung adenocarcinoma
- The Journal of Gene Medicine
-  6 October 2023
Identifying potential anti‐metastasis drugs for prostate cancer through integrative bioinformatics analysis and compound library screening
- The Journal of Gene Medicine
-  14 August 2023
Integrated mRNA and microRNA profiling in lung tissue and blood from human silicosis
- The Journal of Gene Medicine
-  4 July 2023