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    2016
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Open Access

Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information

Siyu Han,  Yanchun Liang,  Ying Li,  Wei Du, 
  • First Published: 27 December 2016
Research Article
Open Access

Detection of QTLs for Yield Heterosis in Rice Using a RIL Population and Its Testcross Population

Yu-Jun Zhu,  De-Run Huang,  Ye-Yang Fan,  Zhen-Hua Zhang,  Jie-Zheng Ying,  Jie-Yun Zhuang, 
  • First Published: 22 December 2016
Review Article
Open Access

The Power of CRISPR-Cas9-Induced Genome Editing to Speed Up Plant Breeding

Hieu X. Cao,  Wenqin Wang,  Hien T. T. Le,  Giang T. H. Vu, 
  • First Published: 20 December 2016
Research Article
Open Access

Identification of Alternative Variants and Insertion of the Novel Polymorphic AluYl17 in TSEN54 Gene during Primate Evolution

Ja-Rang Lee,  Young-Hyun Kim,  Sang-Je Park,  Se-Hee Choe,  Hyeon-Mu Cho,  Sang-Rae Lee,  Sun-Uk Kim,  Ji-Su Kim,  Bo-Woong Sim,  Bong-Seok Song,  Kang-Jin Jeong,  Youngjeon Lee,  Yeung Bae Jin,  Philyong Kang,  Jae-Won Huh,  Kyu-Tae Chang, 
  • First Published: 19 December 2016
Research Article
Open Access

Gene Expression Analysis of Alfalfa Seedlings Response to Acid-Aluminum

Peng Zhou,  Liantai Su,  Aimin Lv,  Shengyin Wang,  Bingru Huang,  Yuan An, 
  • First Published: 15 December 2016
Research Article
Open Access

Comparative Transcriptome Analysis Reveals Effects of Exogenous Hematin on Anthocyanin Biosynthesis during Strawberry Fruit Ripening

Yi Li,  Huayin Li,  Fengde Wang,  Jingjuan Li,  Yihui Zhang,  Liangju Wang,  Jianwei Gao, 
  • First Published: 15 December 2016
Review Article
Open Access

A Survey of Computational Tools to Analyze and Interpret Whole Exome Sequencing Data

Jennifer D. Hintzsche,  William A. Robinson,  Aik Choon Tan, 
  • First Published: 14 December 2016
Research Article
Open Access

Comparative Genomics Analysis of Two Different Virulent Bovine Pasteurella multocida Isolates

Huihui Du,  Rendong Fang,  Tingting Pan,  Tian Li,  Nengzhang Li,  Qiang He,  Rui Wu,  Yuanyi Peng,  Zeyang Zhou, 
  • First Published: 14 December 2016
Research Article
Open Access

Transcriptome Sequencing of Gynostemma pentaphyllum to Identify Genes and Enzymes Involved in Triterpenoid Biosynthesis

Qicong Chen,  Chengtong Ma,  Jieying Qian,  Xiuwan Lan,  Naixia Chao,  Jian Sun,  Yaosheng Wu, 
  • First Published: 14 December 2016
Review Article
Open Access

Role of Recombinant DNA Technology to Improve Life

Suliman Khan,  Muhammad Wajid Ullah,  Rabeea Siddique,  Ghulam Nabi,  Sehrish Manan,  Muhammad Yousaf,  Hongwei Hou, 
  • First Published: 08 December 2016
Review Article
Open Access

Overview on the Role of Advance Genomics in Conservation Biology of Endangered Species

Suliman Khan,  Ghulam Nabi,  Muhammad Wajid Ullah,  Muhammad Yousaf,  Sehrish Manan,  Rabeea Siddique,  Hongwei Hou, 
  • First Published: 29 November 2016
Research Article
Open Access

Genetic Diversity of Cowpea (Vigna unguiculata (L.) Walp.) Accession in Kenya Gene Bank Based on Simple Sequence Repeat Markers

Emily N. Wamalwa,  John Muoma,  Clabe Wekesa, 
  • First Published: 24 November 2016
Research Article
Open Access

Scavenger Receptor Class B, Type I, a CD36 Related Protein in Macrobrachium nipponense: Characterization, RNA Interference, and Expression Analysis with Different Dietary Lipid Sources

Zhili Ding,  Na Luo,  Youqin Kong,  Jingfen Li,  Yixiang Zhang,  Fang Cao,  Jinyun Ye, 
  • First Published: 24 November 2016
Research Article
Open Access

Effect on Soil Properties of BcWRKY1 Transgenic Maize with Enhanced Salinity Tolerance

Xing Zeng,  Yu Zhou,  Zhongjia Zhu,  Hongyue Zu,  Shumin Wang,  Hong Di,  Zhenhua Wang, 
  • First Published: 20 November 2016
Editorial
Open Access

How Can Genomic Tools Contribute to the Conservation of Endangered Organisms

Cino Pertoldi,  Ettore Randi,  Aritz Ruiz-González,  Philippine Vergeer,  Joop Ouborg, 
  • First Published: 15 November 2016
Research Article
Open Access

Bioinformatics Analysis of the Human Surfaceome Reveals New Targets for a Variety of Tumor Types

André L. Fonseca,  Vandeclécio L. da Silva,  Marbella M. da Fonsêca,  Isabella T. J. Meira,  Thayná E. da Silva,  José E. Kroll,  André M. Ribeiro-dos-Santos,  Cléber R. Freitas,  Raimundo Furtado,  Jorge E. de Souza,  Beatriz Stransky,  Sandro J. de Souza, 
  • First Published: 14 November 2016
Research Article
Open Access

Profiling of the Predicted Circular RNAs in Ductal In Situ and Invasive Breast Cancer: A Pilot Study

Marco Galasso,  Giorgio Costantino,  Lorenzo Pasquali,  Linda Minotti,  Federica Baldassari,  Fabio Corrà,  Chiara Agnoletto,  Stefano Volinia, 
  • First Published: 14 November 2016
Research Article
Open Access

Transcriptome-Based Analysis of Dof Family Transcription Factors and Their Responses to Abiotic Stress in Tea Plant (Camellia sinensis)

Hui Li,  Wei Huang,  Zhi-Wei Liu,  Yong-Xin Wang,  Jing Zhuang, 
  • First Published: 31 October 2016
Research Article
Open Access

Novel Graphical Analyses of Runs of Homozygosity among Species and Livestock Breeds

Laura Iacolina,  Astrid V. Stronen,  Cino Pertoldi,  Małgorzata Tokarska,  Louise S. Nørgaard,  Joaquin Muñoz,  Anders Kjærsgaard,  Aritz Ruiz-Gonzalez,  Stanisław Kamiński,  Deirdre C. Purfield, 
  • First Published: 30 October 2016
Research Article
Open Access

GPA-MDS: A Visualization Approach to Investigate Genetic Architecture among Phenotypes Using GWAS Results

Wei Wei,  Paula S. Ramos,  Kelly J. Hunt,  Bethany J. Wolf,  Gary Hardiman,  Dongjun Chung, 
  • First Published: 27 October 2016
Research Article
Open Access

Differential Gene Expression during Larval Metamorphic Development in the Pearl Oyster, Pinctada fucata, Based on Transcriptome Analysis

Haimei Li,  Bo Zhang,  Guiju Huang,  Baosuo Liu,  Sigang Fan,  Dongling Zhang,  Dahui Yu, 
  • First Published: 23 October 2016
Research Article
Open Access

Proteome Analysis of Date Palm (Phoenix dactylifera L.) under Severe Drought and Salt Stress

Haddad A. El Rabey,  Abdulrahman L. Al-Malki,  Khalid O. Abulnaja, 
  • First Published: 20 October 2016
Research Article
Open Access

Analysis of Gene Expression in an Inbred Line of Soft-Shell Clams (Mya arenaria) Displaying Growth Heterosis: Regulation of Structural Genes and the NOD2 Pathway

John J. Wilson,  Janelle Grendler,  Azaline Dunlap-Smith,  Brian F. Beal,  Shallee T. Page, 
  • First Published: 16 October 2016
Research Article
Open Access

Performance Characterization and Validation of Saliva as an Alternative Specimen Source for Detecting Hereditary Breast Cancer Mutations by Next Generation Sequencing

Varsha Meghnani,  Nadeem Mohammed,  Christopher Giauque,  Rahul Nahire,  Thomas David, 
  • First Published: 13 October 2016
Research Article
Open Access

Molecular Cloning, Characterization, and mRNA Expression of Hemocyanin Subunit in Oriental River Prawn Macrobrachium nipponense

Youqin Kong,  Liqiao Chen,  Zhili Ding,  Jianguang Qin,  Shengming Sun,  Ligai Wang,  Jinyun Ye, 
  • First Published: 13 October 2016
Research Article
Open Access

RNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining

Yan Guo,  Jie Wu,  Shilin Zhao,  Fei Ye,  Yinghao Su,  Travis Clark,  Quanhu Sheng,  Brian Lehmann,  Xiao-ou Shu,  Qiuyin Cai, 
  • First Published: 28 September 2016
Review Article
Open Access

Embracing Integrative Multiomics Approaches

Daniel M. Rotroff,  Alison A. Motsinger-Reif, 
  • First Published: 04 September 2016
Research Article
Open Access

Genome-Wide Characterization and Expression Profiles of the Superoxide Dismutase Gene Family in Gossypium

Jingbo Zhang,  Bo Li,  Yang Yang,  Wenran Hu,  Fangyuan Chen,  Lixia Xie,  Ling Fan, 
  • First Published: 31 August 2016
Research Article
Open Access

Clinical Application of a Modular Genomics Technique in Systemic Lupus Erythematosus: Progress towards Precision Medicine

Eric Zollars,  Sean M. Courtney,  Bethany J. Wolf,  Norm Allaire,  Ann Ranger,  Gary Hardiman,  Michelle Petri, 
  • First Published: 30 August 2016
Research Article
Open Access

Genetic Contribution of Ningmai 9 Wheat to Its Derivatives Evaluated by Using SNP Markers

Peng Jiang,  Ping-Ping Zhang,  Xu Zhang,  Hong-Xiang Ma, 
  • First Published: 29 August 2016
Research Article
Open Access

Transcriptome Analyses Reveal Lipid Metabolic Process in Liver Related to the Difference of Carcass Fat Content in Rainbow Trout (Oncorhynchus mykiss)

Guo Hu,  Wei Gu,  Peng Sun,  Qingli Bai,  Bingqian Wang, 
  • First Published: 29 August 2016
Research Article
Open Access

Genome-Wide Analysis of Genes Encoding Methionine-Rich Proteins in Arabidopsis and Soybean Suggesting Their Roles in the Adaptation of Plants to Abiotic Stress

Ha Duc Chu,  Quynh Ngoc Le,  Huy Quang Nguyen,  Dung Tien Le, 
  • First Published: 18 August 2016
Research Article
Open Access

Histological and Molecular Characterization of Grape Early Ripening Bud Mutant

Da-Long Guo,  Yi-He Yu,  Fei-Fei Xi,  Yan-Yan Shi,  Guo-Hai Zhang, 
  • First Published: 17 August 2016
Research Article
Open Access

Genetic Characterization and Comparative Genome Analysis of Brucella melitensis Isolates from India

Sarwar Azam,  Sashi Bhushan Rao,  Padmaja Jakka,  Veera NarasimhaRao,  Bindu Bhargavi,  Vivek Kumar Gupta,  Girish Radhakrishnan, 
  • First Published: 25 July 2016
Research Article
Open Access

SSR Mapping of QTLs Conferring Cold Tolerance in an Interspecific Cross of Tomato

Yang Liu,  Tengxia Zhou,  Haiyan Ge,  Wen Pang,  Lijie Gao,  Li Ren,  Huoying Chen, 
  • First Published: 19 July 2016
Research Article
Open Access

Accurate Identification of Cancerlectins through Hybrid Machine Learning Technology

Jieru Zhang,  Ying Ju,  Huijuan Lu,  Ping Xuan,  Quan Zou, 
  • First Published: 13 July 2016
Research Article
Open Access

De Novo Sequencing and Characterization of the Transcriptome of Dwarf Polish Wheat (Triticum polonicum L.)

Yi Wang,  Chao Wang,  Xiaolu Wang,  Fan Peng,  Ruijiao Wang,  Yulin Jiang,  Jian Zeng,  Xing Fan,  Houyang Kang,  Lina Sha,  Haiqin Zhang,  Xue Xiao,  Yonghong Zhou, 
  • First Published: 27 June 2016
Research Article
Open Access

Mapping of Novel QTL Regulating Grain Shattering Using Doubled Haploid Population in Rice (Oryza sativa L.)

Gyu-Ho Lee,  In-Kyu Kang,  Kyung-Min Kim, 
  • First Published: 22 June 2016
Research Article
Open Access

Shotgun Quantitative Proteomic Analysis of Proteins Responding to Drought Stress in Brassica rapa L. (Inbred Line “Chiifu”)

Soon-Wook Kwon,  Mijeong Kim,  Hijin Kim,  Joohyun Lee, 
  • First Published: 21 June 2016
Research Article
Open Access

Using Genome-Wide SNP Discovery and Genotyping to Reveal the Main Source of Population Differentiation in Nothofagus dombeyi (Mirb.) Oerst. in Chile

Rodrigo Hasbún,  Jorge González,  Carolina Iturra,  Glenda Fuentes,  Diego Alarcón,  Eduardo Ruiz, 
  • First Published: 20 June 2016
Research Article
Open Access

Drug Target Identification and Prioritization for Treatment of Ovine Foot Rot: An In Silico Approach

Abhishek Acharya,  Lalit C. Garg, 
  • First Published: 09 June 2016
Review Article
Open Access

Integrating Genomic Data Sets for Knowledge Discovery: An Informed Approach to Management of Captive Endangered Species

Kristopher J. L. Irizarry,  Doug Bryant,  Jordan Kalish,  Curtis Eng,  Peggy L. Schmidt,  Gini Barrett,  Margaret C. Barr, 
  • First Published: 08 June 2016
Research Article
Open Access

De Novo Assembly and Comparative Transcriptome Analysis Provide Insight into Lysine Biosynthesis in Toona sinensis Roem

Xia Zhang,  Zhenqiao Song,  Tian Liu,  Linlin Guo,  Xingfeng Li, 
  • First Published: 07 June 2016
Research Article
Open Access

Comparative Genomics of Herpesviridae Family to Look for Potential Signatures of Human Infecting Strains

Vikas Sharma,  Fauzul Mobeen,  Tulika Prakash, 
  • First Published: 26 May 2016
Research Article
Open Access

Integration of HIV in the Human Genome: Which Sites Are Preferential? A Genetic and Statistical Assessment

Juliana Gonçalves,  Elsa Moreira,  Inês J. Sequeira,  António S. Rodrigues,  José Rueff,  Aldina Brás, 
  • First Published: 12 May 2016
Research Article
Open Access

A Quantitative Genomic Approach for Analysis of Fitness and Stress Related Traits in a Drosophila melanogaster Model Population

Palle Duun Rohde,  Kristian Krag,  Volker Loeschcke,  Johannes Overgaard,  Peter Sørensen,  Torsten Nygaard Kristensen, 
  • First Published: 19 April 2016
Research Article
Open Access

Transcriptomic Analysis of Resistant and Susceptible Bombyx mori Strains Following BmNPV Infection Provides Insights into the Antiviral Mechanisms

Gang Li,  Heying Qian,  Xufang Luo,  Pingzhen Xu,  Jianhua Yang,  Mingzhu Liu,  Anying Xu, 
  • First Published: 18 April 2016
Review Article
Open Access

The Microbiome of Animals: Implications for Conservation Biology

Simon Bahrndorff,  Tibebu Alemu,  Temesgen Alemneh,  Jeppe Lund Nielsen, 
  • First Published: 18 April 2016
Research Article
Open Access

The Whole Genome Assembly and Comparative Genomic Research of Thellungiella parvula (Extremophile Crucifer) Mitochondrion

Xuelin Wang,  Changwei Bi,  Yiqing Xu,  Suyun Wei,  Xiaogang Dai,  Tongming Yin,  Ning Ye, 
  • First Published: 11 April 2016
Research Article
Open Access

Differential Methylation of Genomic Regions Associated with Heteroblasty Detected by M&M Algorithm in the Nonmodel Species Eucalyptus globulus Labill.

Rodrigo Hasbún,  Carolina Iturra,  Soraya Bravo,  Boris Rebolledo-Jaramillo,  Luis Valledor, 
  • First Published: 30 March 2016
Research Article
Open Access

Transcriptome Analysis of Bovine Ovarian Follicles at Predeviation and Onset of Deviation Stages of a Follicular Wave

Pengfei Li,  Jinzhu Meng,  Wenzhong Liu,  George W. Smith,  Jianbo Yao,  Lihua Lyu, 
  • First Published: 21 March 2016
Research Article
Open Access

The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons)

Rascha J. M. Nuijten,  Mirte Bosse,  Richard P. M. A. Crooijmans,  Ole Madsen,  Willem Schaftenaar,  Oliver A. Ryder,  Martien A. M. Groenen,  Hendrik-Jan Megens, 
  • First Published: 16 March 2016
Research Article
Open Access

Use of Posttranscription Gene Silencing in Squash to Induce Resistance against the Egyptian Isolate of the Squash Leaf Curl Virus

Omnia Taha,  Inas Farouk,  Abdelhadi Abdallah,  Naglaa A. Abdallah, 
  • First Published: 13 March 2016
Research Article
Open Access

Transcriptome Profile of the Asian Giant Hornet (Vespa mandarinia) Using Illumina HiSeq 4000 Sequencing: De Novo Assembly, Functional Annotation, and Discovery of SSR Markers

Bharat Bhusan Patnaik,  So Young Park,  Se Won Kang,  Hee-Ju Hwang,  Tae Hun Wang,  Eun Bi Park,  Jong Min Chung,  Dae Kwon Song,  Changmu Kim,  Soonok Kim,  Jae Bong Lee,  Heon Cheon Jeong,  Hong Seog Park,  Yeon Soo Han,  Yong Seok Lee, 
  • First Published: 10 January 2016